RchiOBHm_Chr4g0414621

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000637
Physical Location & Seq
Reverse (-)
39133421 .. 39133984
564 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGGATGAAATAAAATGGGAAAACTTGAATAAAGATTGTTTGGAGAATGTGTTTGGAAGAGTTGGAATGAAGTCACTGCTCTTGGATGTCCCTTTCGTATGTAGGTCATGGCACGCAGCAACCCTCGATCCCTCATGCTGGCAAAGTATCGATATTCCAGATATTGTAACTGATCGATATAGTTTTGACCCGCTTGAAATGGAATCTTGGAAATTTTACCCCTTTTTAAAAAGATTTGTACAGGAATATCGAATCGATGAGACTAATTTATCTGTCACAGCATTCATAAAGTTTGTCATTGATCGTAGTAAAGGACGTCCTACTTTTGTGCGGCTACCTCTTTGTTCAGAAATAGCTGTGGAATATGTTGTAGATATTGGCTTTATGTCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

131

Amino Acids

15.38

Weight (kDa)

4.86

Isoelectric Point (pI)

45.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 319
AciI CCGC 2 cut(s) 191, 331
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 2 cut(s) 28, 197
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 212
BbvI GCAGC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 254
BisI GCNGC 2 cut(s) 117, 332
BlsI GCNGC 2 cut(s) 118, 333
Bsa29I ATCGAT 3 cut(s) 150, 175, 255
BsaHI GRCGYC 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 1 cut(s) 138
BseCI ATCGAT 3 cut(s) 150, 175, 255
BseGI GGATG 2 cut(s) 10, 91
BseLI CCNNNNNNNGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 128
BshVI ATCGAT 3 cut(s) 150, 175, 255
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 3 cut(s) 127, 172, 301
BspACI CCGC 2 cut(s) 191, 331
BspDI ATCGAT 3 cut(s) 150, 175, 255
BspPI GGATC 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 238
BssMI GATC 3 cut(s) 127, 172, 301
BssNI GRCGYC 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 114, 140
BstF5I GGATG 2 cut(s) 10, 91
BstKTI GATC 3 cut(s) 130, 175, 304
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 127, 172, 301
BstV1I GCAGC 1 cut(s) 128
Bsu15I ATCGAT 3 cut(s) 150, 175, 255
BsuTUI ATCGAT 3 cut(s) 150, 175, 255
BtsCI GGATG 2 cut(s) 10, 91
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 114, 140
ClaI ATCGAT 3 cut(s) 150, 175, 255
Csp6I GTAC 1 cut(s) 239
CviAII CATG 2 cut(s) 108, 135
CviJI RGCY 3 cut(s) 334, 356, 381
CviKI_1 RGCY 3 cut(s) 334, 356, 381
CviQI GTAC 1 cut(s) 239
DpnI GATC 3 cut(s) 129, 174, 303
DpnII GATC 3 cut(s) 127, 172, 301
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
FaeI CATG 2 cut(s) 111, 138
FaiI YATR 7 cut(s) 100, 109, 136, 180, 287, 366, 386
FaqI GGGAC 1 cut(s) 74
FatI CATG 2 cut(s) 107, 134
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 117, 332
FokI GGATG 2 cut(s) 17, 98
Fsp4HI GCNGC 2 cut(s) 117, 332
GluI GCNGC 2 cut(s) 117, 332
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 2 cut(s) 111, 138
HinfI GANTC 2 cut(s) 203, 252
Hpy188I TCNGA 2 cut(s) 349, 395
Hpy188III TCNNGA 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 316
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 2 cut(s) 111, 138
Kzo9I GATC 3 cut(s) 127, 172, 301
LpnPI CCDG 3 cut(s) 124, 171, 227
Lsp1109I GCAGC 1 cut(s) 128
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 4 cut(s) 72, 166, 274, 387
MalI GATC 3 cut(s) 129, 174, 303
MboI GATC 3 cut(s) 127, 172, 301
MboII GAAGA 1 cut(s) 69
MluCI AATT 2 cut(s) 212, 265
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 3 cut(s) 134, 142, 348
MseI TTAA 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 281
NdeII GATC 3 cut(s) 127, 172, 301
NlaIII CATG 2 cut(s) 111, 138
NmuCI GTSAC 3 cut(s) 72, 274, 387
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 203, 252
PkrI GCNGC 2 cut(s) 118, 333
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 2 cut(s) 117, 332
Sau3AI GATC 3 cut(s) 127, 172, 301
SetI ASST 4 cut(s) 107, 319, 340, 358
Sse9I AATT 2 cut(s) 212, 265
SsiI CCGC 2 cut(s) 191, 331
TaiI ACGT 1 cut(s) 319
TaqI TCGA 5 cut(s) 126, 150, 175, 250, 255
TasI AATT 2 cut(s) 212, 265
TatI WGTACW 1 cut(s) 238
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 2 cut(s) 203, 252
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 3 cut(s) 72, 274, 387
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 3 cut(s) 72, 274, 387
TspDTI ATGAA 3 cut(s) 21, 83, 274
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 212
ZraI GACGTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.