RchiOBHm_Chr4g0414641

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000637
Physical Location & Seq
Reverse (-)
39176469 .. 39178343
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1095 bp
ATGTTCGTAGGTGAAAGCATTTTCTTTAGTGATGGGTTTGTCGACTCACTTGTGACAGGTCTTTTACCCTATTGGCTTGAGATACCAACAAATGAAGATGCTGGTAAAACTTTATATATATTTGATGATTTTCCAAGCAAGGAAGCACAAAAACCGTTCCGGGAAGATCACCAAGCACAAAATACTTATTACGAGATGGAAGATGAACCAAGATGGGAGGAATTAGAGGTTGACTGTTTGGTGAATGTATTTGGAAGAGTGGGAATGGAGTCATTGCTTTTGGATGTCCCTTTCGTATGCAAGTCATGGTACAGAGCAACCCTCGTCCCTTCATGCTGGCAATTTCTCAAATTTCCTGATGATCTAAGTGATCCTATTCTTGTCGATTTTGTTGGTCCTGGTTGTGACCCTAAACCCGGATATCTGTGTACGTGTACCTTTATTCGAAGATTTATAGATGAGTATCGACTTGATGGGAGGCGTTTCTCGGTGACTGCATTTCTTAAATTTATAATCAGTCGTAGCAAAGGAAAGGCTATGTCTCTCAGGCTACCTCGAGATGCCTCGGAAGATGTCTTGAAATATGCTGCAGATGAGTGTCCTGCCTTAAAGCTTCTTTCATTGCCCAGCCGTTTAGTGAACCGTAATGCAAGCATAATTCAAGAAATGATTGGAAAGTGGACAAATTTGGAGTACTTGGTATTGGGAACCAGCTATAATTTGGAGAACATCCTTGGACAGATCTCCATTCACTGCAAGAACTTGCGTCTTTCGAGAGTGGCTAGTGCAGAGATTGGTAAAGATAAAGCAATGGCAATTGTTAGCTTGCTGCCTAAGCTTAAGCAATTGATCTTGAAGAATGCGTATATTGATCGCGGTGCTCTTGTGACGCTACTGCAGGGCTGCAACGAGCTTGTGCGTTTAGATGTCAGCAATTGTAGAGGTTTTAATGGGAGAGATGAAGAAATAGCAAAGCTTGCTTCTCATATTTCTAATTTCAGCTCTCGCGGTTCTATACTATTTGATTATGATGATTACGACGAGGGTGGAAGTTTTTACCATGATGAATTCTTTCATGGATATGGTTCCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

364

Amino Acids

41.41

Weight (kDa)

5.0

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000637)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13771 FvH4_4g13861 FvH4_4g13862 FvH4_4g13890 FvH4_4g13890 FvH4_4g13890 FvH4_4g13901
malus_domestica MD04G1010000.v1.1
prunus_persica Prupe.1G009600_v2.0.a1 Prupe.1G010100_v2.0.a1 Prupe.1G012400_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G012700_v2.0.a1 Prupe.1G157400_v2.0.a1 Prupe.1G157500_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.1G158200_v2.0.a1 Prupe.2G138900_v2.0.a1 Prupe.6G053000_v2.0.a1
pyrus_communis pycom04g00810
rosa_chinensis RchiOBHm_Chr4g0414621 RchiOBHm_Chr4g0414631 RchiOBHm_Chr4g0414641 RchiOBHm_Chr4g0415011 RchiOBHm_Chr4g0415031
rosa_laevigata RLG00000008101 RLG00000008104 RLG00000008138 RLG00000008139 RLG00000008140 RLG00000008354
rosa_multiflora Rmu_co8247483.1_g000001 Rmu_sc0003611.1_g000009 Rmu_sc0003611.1_g000014 Rmu_sc0007034.1_g000033 Rmu_sc0007391.1_g000006 Rmu_sc0011778.1_g000017 Rmu_sc0016172.1_g000002
rosa_roxburghii Rroxscaffold_5G00358400 Rroxscaffold_5G00358430 Rroxscaffold_5G00358610 Rroxscaffold_5G00358740 Rroxscaffold_5G00358750 Rroxscaffold_5G00358770
rosa_rugosa Rorug04G0108700 Rorug04G0128400 Rorug04G0128500 Rorug04G0128900 Rorug04G0129000 Rorug04G0129100 Rorug04G0131400 Rorug04G0131500 Rorug04G0131600 Rorug04G0131800 Rorug04G0131900
rosa_samantha Rh4AG187100 Rh4AG187200 Rh4AG190700 Rh4AG191200 Rh4BG185800 Rh4BG186100 Rh4BG188700 Rh4BG188900 Rh4BG189300 Rh4CG199200 Rh4CG199700 Rh4CG201900 Rh4CG202100 Rh4DG185400 Rh4DG185700 Rh4DG189300 Rh4DG189700 Rh6CG237600
rosa_wichuraiana Rw4G015970 Rw4G016000 Rw4G016240 Rw4G016260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AccI GTMKAC 1 cut(s) 42
AccII CGCG 2 cut(s) 876, 1008
AciI CCGC 2 cut(s) 876, 1008
AclWI GGATC 1 cut(s) 365
AcsI RAATTY 4 cut(s) 350, 506, 685, 1067
AfaI GTAC 4 cut(s) 311, 430, 436, 695
AfiI CCNNNNNNNGG 1 cut(s) 416
AflII CTTAAG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 3 cut(s) 580, 662, 856
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 7 cut(s) 613, 714, 825, 838, 913, 976, 1002
AluI AGCT 7 cut(s) 613, 714, 825, 838, 913, 976, 1002
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 1 cut(s) 546
AlwI GGATC 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 555
ApeKI GCWGC 3 cut(s) 587, 829, 903
ApoI RAATTY 4 cut(s) 350, 506, 685, 1067
Asp700I GAANNNNTTC 1 cut(s) 1071
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 2 cut(s) 161, 417
AsuHPI GGTGA 4 cut(s) 23, 161, 253, 502
AsuII TTCGAA 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 555
AvaII GGWCC 1 cut(s) 395
Bbv12I GWGCWC 1 cut(s) 883
BbvI GCAGC 3 cut(s) 574, 816, 890
BccI CCATC 4 cut(s) 26, 190, 207, 467
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 1 cut(s) 399
BcnI CCSGG 2 cut(s) 161, 417
BcoDI GTCTC 1 cut(s) 546
BfaI CTAG 1 cut(s) 783
BfmI CTRYAG 2 cut(s) 588, 896
BfrI CTTAAG 1 cut(s) 839
BglII AGATCT 1 cut(s) 741
BisI GCNGC 3 cut(s) 588, 830, 904
BlsI GCNGC 3 cut(s) 589, 831, 905
BmcAI AGTACT 1 cut(s) 695
Bme1390I CCNGG 3 cut(s) 161, 399, 417
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 709, 1087
BmrFI CCNGG 3 cut(s) 161, 399, 417
BmsI GCATC 2 cut(s) 88, 550
BplI GAGNNNNNCTC 2 cut(s) 306, 338
Bpu10I CCTNAGC 1 cut(s) 834
Bpu14I TTCGAA 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 161, 417
BsaAI YACGTR 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 564, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse3DI GCAATG 3 cut(s) 272, 620, 816
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 2 cut(s) 564, 733
BseGI GGATG 2 cut(s) 289, 729
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMI GCAATG 3 cut(s) 272, 620, 816
BseMII CTCAG 1 cut(s) 559
BseXI GCAGC 3 cut(s) 574, 816, 890
BseYI CCCAGC 1 cut(s) 626
BsgI GTGCAG 1 cut(s) 807
Bsh1236I CGCG 2 cut(s) 876, 1008
BsiHKAI GWGCWC 1 cut(s) 883
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 2 cut(s) 160, 417
BslFI GGGAC 2 cut(s) 272, 311
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 1 cut(s) 546
BsmFI GGGAC 2 cut(s) 272, 311
BsmI GAATGC 1 cut(s) 865
BsoBI CYCGRG 1 cut(s) 555
Bsp119I TTCGAA 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 883
Bsp143I GATC 6 cut(s) 166, 361, 370, 741, 849, 871
BspACI CCGC 2 cut(s) 876, 1008
BspCNI CTCAG 1 cut(s) 558
BspFNI CGCG 2 cut(s) 876, 1008
BspLI GGNNCC 2 cut(s) 709, 1087
BspMAI CTGCAG 2 cut(s) 592, 900
BspPI GGATC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 839
BsrDI GCAATG 3 cut(s) 272, 620, 816
BssECI CCNNGG 2 cut(s) 564, 733
BssMI GATC 6 cut(s) 166, 361, 370, 741, 849, 871
BssT1I CCWWGG 1 cut(s) 733
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 156, 236, 644
Bst6I CTCTTC 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 839
BstAPI GCANNNNNTGC 1 cut(s) 977
BstBAI YACGTR 1 cut(s) 432
BstBI TTCGAA 1 cut(s) 445
BstC8I GCNNGC 4 cut(s) 338, 652, 827, 978
BstDEI CTNAG 3 cut(s) 365, 545, 834
BstF5I GGATG 2 cut(s) 289, 729
BstFNI CGCG 2 cut(s) 876, 1008
BstKTI GATC 6 cut(s) 169, 364, 373, 744, 852, 874
BstMAI GTCTC 1 cut(s) 546
BstMBI GATC 6 cut(s) 166, 361, 370, 741, 849, 871
BstMWI GCNNNNNNNGC 2 cut(s) 835, 977
BstNI CCWGG 1 cut(s) 399
BstSCI CCNGG 3 cut(s) 159, 397, 415
BstSFI CTRYAG 2 cut(s) 588, 896
BstUI CGCG 2 cut(s) 876, 1008
BstV1I GCAGC 3 cut(s) 574, 816, 890
BstX2I RGATCY 1 cut(s) 741
BstYI RGATCY 1 cut(s) 741
BtsCI GGATG 2 cut(s) 289, 729
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 4 cut(s) 338, 652, 827, 978
Cfr13I GGNCC 1 cut(s) 395
CseI GACGC 2 cut(s) 755, 898
Csp6I GTAC 4 cut(s) 310, 429, 435, 694
CviAII CATG 4 cut(s) 306, 333, 1061, 1076
CviQI GTAC 4 cut(s) 310, 429, 435, 694
DdeI CTNAG 3 cut(s) 365, 545, 834
DpnI GATC 6 cut(s) 168, 363, 372, 743, 851, 873
DpnII GATC 6 cut(s) 166, 361, 370, 741, 849, 871
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 733
Eco32I GATATC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 1067
EcoRII CCWGG 1 cut(s) 397
EcoRV GATATC 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 733
FaeI CATG 4 cut(s) 309, 336, 1064, 1079
FaqI GGGAC 2 cut(s) 272, 311
FatI CATG 4 cut(s) 305, 332, 1060, 1075
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 588, 830, 904
FokI GGATG 2 cut(s) 296, 716
Fsp4HI GCNGC 3 cut(s) 588, 830, 904
FspBI CTAG 1 cut(s) 783
GluI GCNGC 3 cut(s) 588, 830, 904
GsaI CCCAGC 1 cut(s) 630
HapII CCGG 2 cut(s) 160, 417
HgaI GACGC 2 cut(s) 755, 898
Hin1II CATG 4 cut(s) 309, 336, 1064, 1079
HincII GTYRAC 2 cut(s) 43, 232
HindII GTYRAC 2 cut(s) 43, 232
HindIII AAGCTT 3 cut(s) 611, 836, 974
HinfI GANTC 2 cut(s) 44, 269
HpaII CCGG 2 cut(s) 160, 417
HphI GGTGA 4 cut(s) 23, 161, 253, 502
Hpy166II GTNNAC 6 cut(s) 43, 232, 429, 435, 640, 681
Hpy188I TCNGA 2 cut(s) 568, 1090
Hpy188III TCNNGA 6 cut(s) 356, 557, 577, 662, 774, 853
Hpy8I GTNNAC 6 cut(s) 43, 232, 429, 435, 640, 681
Hpy99I CGWCG 1 cut(s) 1043
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 3 cut(s) 156, 236, 644
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 8 cut(s) 300, 497, 590, 650, 756, 788, 898, 906
HpyF10VI GCNNNNNNNGC 2 cut(s) 835, 977
HpyF3I CTNAG 3 cut(s) 365, 545, 834
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 4 cut(s) 309, 336, 1064, 1079
Kzo9I GATC 6 cut(s) 166, 361, 370, 741, 849, 871
Lsp1109I GCAGC 3 cut(s) 574, 816, 890
LweI GCATC 2 cut(s) 88, 550
MaeI CTAG 1 cut(s) 783
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 4 cut(s) 52, 404, 490, 886
MalI GATC 6 cut(s) 168, 363, 372, 743, 851, 873
MboI GATC 6 cut(s) 166, 361, 370, 741, 849, 871
MboII GAAGA 8 cut(s) 107, 176, 212, 267, 459, 581, 868, 974
MfeI CAATTG 3 cut(s) 816, 845, 934
MflI RGATCY 1 cut(s) 741
MhlI GDGCHC 1 cut(s) 883
MlyI GAGTC 2 cut(s) 38, 278
MnlI CCTC 8 cut(s) 211, 220, 332, 471, 564, 574, 935, 1036
MroXI GAANNNNTTC 1 cut(s) 1071
MseI TTAA 5 cut(s) 504, 608, 840, 948, 1093
MslI CAYNNNNRTG 1 cut(s) 1080
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 2 cut(s) 160, 417
MspR9I CCNGG 3 cut(s) 161, 399, 417
MunI CAATTG 3 cut(s) 816, 845, 934
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 399
MvnI CGCG 2 cut(s) 876, 1008
MwoI GCNNNNNNNGC 2 cut(s) 835, 977
NciI CCSGG 2 cut(s) 161, 417
NdeII GATC 6 cut(s) 166, 361, 370, 741, 849, 871
NlaIII CATG 4 cut(s) 309, 336, 1064, 1079
NlaIV GGNNCC 2 cut(s) 709, 1087
NmuCI GTSAC 4 cut(s) 52, 404, 490, 886
NspV TTCGAA 1 cut(s) 445
PaeR7I CTCGAG 1 cut(s) 555
PctI GAATGC 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 1071
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 3 cut(s) 589, 831, 905
PleI GAGTC 2 cut(s) 38, 277
PpsI GAGTC 2 cut(s) 38, 277
Ppu21I YACGTR 1 cut(s) 432
PsiI TTATAA 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 626
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 2 cut(s) 709, 1087
PspPI GGNCC 1 cut(s) 395
PstI CTGCAG 2 cut(s) 592, 900
PsuI RGATCY 1 cut(s) 741
RsaI GTAC 4 cut(s) 311, 430, 436, 695
RsaNI GTAC 4 cut(s) 310, 429, 435, 694
RseI CAYNNNNRTG 1 cut(s) 1080
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 5 cut(s) 504, 608, 840, 948, 1093
SatI GCNGC 3 cut(s) 588, 830, 904
Sau3AI GATC 6 cut(s) 166, 361, 370, 741, 849, 871
Sau96I GGNCC 1 cut(s) 395
ScaI AGTACT 1 cut(s) 695
SchI GAGTC 2 cut(s) 38, 278
ScrFI CCNGG 3 cut(s) 161, 399, 417
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 2 cut(s) 88, 550
SfcI CTRYAG 2 cut(s) 588, 896
Sfr274I CTCGAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 445
SinI GGWCC 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 1080
SmlI CTYRAG 3 cut(s) 77, 555, 839
SmoI CTYRAG 3 cut(s) 77, 555, 839
SsiI CCGC 2 cut(s) 876, 1008
SspMI CTAG 1 cut(s) 783
StyD4I CCNGG 3 cut(s) 159, 397, 415
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 3 cut(s) 156, 236, 644
TaiI ACGT 1 cut(s) 434
TaqI TCGA 6 cut(s) 42, 384, 445, 466, 556, 773
TatI WGTACW 1 cut(s) 693
Tru1I TTAA 5 cut(s) 504, 608, 840, 948, 1093
Tru9I TTAA 5 cut(s) 504, 608, 840, 948, 1093
TscAI CASTG 1 cut(s) 758
TseFI GTSAC 4 cut(s) 52, 404, 490, 886
TseI GCWGC 3 cut(s) 587, 829, 903
Tsp45I GTSAC 4 cut(s) 52, 404, 490, 886
TspDTI ATGAA 7 cut(s) 108, 219, 321, 609, 975, 1064, 1080
TspRI CASTG 1 cut(s) 758
Vha464I CTTAAG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 4 cut(s) 350, 506, 685, 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 718
XhoI CTCGAG 1 cut(s) 555
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 1 cut(s) 783
ZrmI AGTACT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.