RchiOBHm_Chr2g0092711

caffeoyl-CoA O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000432
Physical Location & Seq
Reverse (-)
6086388 .. 6087676
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 663 bp
ATGAGGGCTTTCATGGGTATTGCACCTGATGCAGGTCAGTTAATGACTATGCTCTTGAAACTAGTGAATCCCAAAAATGCAATTGAAATCGGAGTTTTCACCGGATACTCTCTTCTCCTCACTGCTCTCACGATTCCTGATTATGGCAAGATTACAGCCATAGACAAAAACCGGAAAGCATATGAAATAGGCTTACCAATCATCAAAAAAGCCGGTGTAGAGCACAAAATTGACTTCACTGAGTCCCCAGCTCTGCCTATTCTTGACAAACTCTTGGAAAATGTAGACATACAAGACATTGAATTTATTTTGTTCTTATCAAAATTTCAAGCGCTTGAAATTGGCTCTTGTGCTTCATGTTGTGGCCTGCAGCCAGAGAAGGAAGGGAGTTTCGACTTTGCTTTTGTTGATGCGGACAAGAATAACTACTGGAACTACCACAAGAGGCTAATGAAGCTGGTTAAGATTGGTGGGATGGTTATCTATGATAACACACTTTGGGGAGGGTCAGTTGCTCTGCGTGAAGAAGATGTTCCAGAGGCCAAAAGGGAATGGAGGCAATGTGCAATCGAGTTTAACAAATTGATTTCGGCTGACCCTCGTGTCGAAATGTCCCAAGTTCCTTTGGGTGATGGAATCACAATTTGCAGGCGCGTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

220

Amino Acids

24.62

Weight (kDa)

5.54

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 4 - 104 1.6e-33 O-methyltransferase
Methyltransf_3 PF01596 126 - 219 2.2e-32 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 602
Acc36I ACCTGC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 654
AciI CCGC 1 cut(s) 413
AcsI RAATTY 2 cut(s) 302, 323
AfeI AGCGCT 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 32, 143
AgsI TTSAA 5 cut(s) 58, 86, 302, 329, 338
AhlI ACTAGT 1 cut(s) 61
AluBI AGCT 2 cut(s) 251, 457
AluI AGCT 2 cut(s) 251, 457
Alw21I GWGCWC 1 cut(s) 225
Aor51HI AGCGCT 1 cut(s) 333
AoxI GGCC 2 cut(s) 364, 540
ApeKI GCWGC 1 cut(s) 370
ApoI RAATTY 2 cut(s) 302, 323
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 2 cut(s) 334, 654
AsuHPI GGTGA 2 cut(s) 91, 641
BauI CACGAG 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 469, 626
BciVI GTATCC 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 98
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
BmsI GCATC 2 cut(s) 19, 400
BsaBI GATNNNNATC 1 cut(s) 479
BsaWI WCCGGW 2 cut(s) 101, 171
BsaXI ACNNNNNCTCC 4 cut(s) 495, 525, 547, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 143
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 566
Bse8I GATNNNNATC 1 cut(s) 479
BseGI GGATG 1 cut(s) 480
BseJI GATNNNNATC 1 cut(s) 479
BseLI CCNNNNNNNGG 2 cut(s) 32, 143
BseMI GCAATG 1 cut(s) 566
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 654
BshFI GGCC 2 cut(s) 366, 542
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 3 cut(s) 102, 172, 213
BslFI GGGAC 2 cut(s) 229, 598
BslI CCNNNNNNNGG 2 cut(s) 32, 143
BsmFI GGGAC 2 cut(s) 229, 598
BsnI GGCC 2 cut(s) 366, 542
Bsp1286I GDGCHC 1 cut(s) 225
BspACI CCGC 1 cut(s) 413
BspANI GGCC 2 cut(s) 366, 542
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 654
BspMAI CTGCAG 1 cut(s) 372
BspMI ACCTGC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 566
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 212
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 368, 650
BstDEI CTNAG 1 cut(s) 240
BstENI CCTNNNNNAGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 654
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 2 cut(s) 334, 654
BstMWI GCNNNNNNNGC 2 cut(s) 29, 454
BstSFI CTRYAG 1 cut(s) 368
BstUI CGCG 1 cut(s) 654
BstV1I GCAGC 1 cut(s) 382
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 366, 542
BtsCI GGATG 1 cut(s) 480
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 237
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 368, 650
CfoI GCGC 2 cut(s) 334, 654
Cfr10I RCCGGY 1 cut(s) 212
CviAII CATG 2 cut(s) 13, 357
DdeI CTNAG 1 cut(s) 240
DrdI GACNNNNNNGTC 1 cut(s) 602
DseDI GACNNNNNNGTC 1 cut(s) 602
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 333
EcoNI CCTNNNNNAGG 1 cut(s) 30
FaeI CATG 2 cut(s) 16, 360
FaiI YATR 9 cut(s) 14, 50, 144, 161, 181, 183, 290, 358, 486
FaqI GGGAC 2 cut(s) 229, 598
FatI CATG 2 cut(s) 12, 356
FauNDI CATATG 1 cut(s) 181
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 1 cut(s) 371
FspBI CTAG 1 cut(s) 62
GlaI GCGC 2 cut(s) 333, 653
GluI GCNGC 1 cut(s) 371
GsaI CCCAGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 366, 542
HapII CCGG 3 cut(s) 102, 172, 213
HhaI GCGC 2 cut(s) 334, 654
Hin1II CATG 2 cut(s) 16, 360
Hin6I GCGC 2 cut(s) 332, 652
HinP1I GCGC 2 cut(s) 332, 652
HinfI GANTC 4 cut(s) 67, 133, 242, 636
HpaII CCGG 3 cut(s) 102, 172, 213
HphI GGTGA 2 cut(s) 91, 641
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 5 cut(s) 55, 130, 137, 263, 536
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 373, 377
HpyCH4V TGCA 6 cut(s) 23, 32, 80, 370, 566, 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 454
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 2 cut(s) 16, 360
HspAI GCGC 2 cut(s) 332, 652
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 2 cut(s) 19, 400
MaeI CTAG 1 cut(s) 62
MboII GAAGA 3 cut(s) 104, 536, 539
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 7 cut(s) 81, 228, 302, 323, 339, 581, 642
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 6 cut(s) 128, 438, 497, 532, 549, 609
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 3 cut(s) 41, 462, 576
MspI CCGG 3 cut(s) 102, 172, 213
MunI CAATTG 1 cut(s) 81
MvnI CGCG 1 cut(s) 654
MwoI GCNNNNNNNGC 2 cut(s) 29, 454
NdeI CATATG 1 cut(s) 181
NlaIII CATG 2 cut(s) 16, 360
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 3 cut(s) 67, 133, 636
PkrI GCNGC 1 cut(s) 372
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 247
PstI CTGCAG 1 cut(s) 372
SaqAI TTAA 3 cut(s) 41, 462, 576
SatI GCNGC 1 cut(s) 371
SchI GAGTC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 225
SetI ASST 4 cut(s) 28, 37, 253, 459
SfaNI GCATC 2 cut(s) 19, 400
SfcI CTRYAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 61
Sse9I AATT 7 cut(s) 81, 228, 302, 323, 339, 581, 642
SsiI CCGC 1 cut(s) 413
SspMI CTAG 1 cut(s) 62
TaqI TCGA 3 cut(s) 393, 570, 606
TasI AATT 7 cut(s) 81, 228, 302, 323, 339, 581, 642
TfiI GAWTC 3 cut(s) 67, 133, 636
Tru1I TTAA 3 cut(s) 41, 462, 576
Tru9I TTAA 3 cut(s) 41, 462, 576
TscAI CASTG 2 cut(s) 127, 244
TseI GCWGC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 198, 345, 467
TspRI CASTG 2 cut(s) 127, 244
XagI CCTNNNNNAGG 1 cut(s) 30
XapI RAATTY 2 cut(s) 302, 323
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.