RchiOBHm_Chr2g0092721

O-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000432
Physical Location & Seq
Reverse (-)
6088477 .. 6092831
4355 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGTCAGTTACAGTTACTTGGTCAGTGACATGGTCAGTTACGTGACCAGTTACAGTTACAGTTACAGTTACTTGGTCAGTGACATGGTCAGTTACGTGACCAGTTACAGTTACTTGGTCCGTGACATGGTCAGTGACATGGTCAGTTACGTGACCAGTTACAGTTACTTGGTCCGTGACATGCAAATCAGCAATTGCCCTTGGTTCATGGGTGCATTTGCTCTAATTGCGTTGATGAGAGCGATTGAAATTGGAGTTTTTACTGGCTACTTGCTTCTCCTCACTGCCTTTAGGATTCCTGATGGTGGCAAGCCAGAGCTGGAAGGGAGTTTTGATTTTGCTTTTGTTGATGCTGACAAGAACAACAATTGGAATTACCACAAAAGGGTAATGAAACTGATCAATGTTGGTGGAATAGTTATCTATGATAACACACTTTGGGGAGGGACAGTTGCTTTACCTGAAGAAGATGTTCCTGAGACCAAAAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00360 ko00940 ko00941 ko00945 ko01100 ko01110 map00360 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Methyltransf_3

Protein Analysis

164

Amino Acids

18.69

Weight (kDa)

4.58

Isoelectric Point (pI)

23.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_3 PF01596 108 - 162 2.5e-17 O-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000432)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34050 AT4G34050 AT4G34050
fragaria_vesca FvH4_1g06851 FvH4_1g06860 FvH4_1g06860 FvH4_1g06890 FvH4_1g06890 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g13960 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_1g14010 FvH4_2g05780 FvH4_2g05780
malus_domestica MD00G1088100.v1.1 MD02G1073300.v1.1 MD05G1083900.v1.1
prunus_persica Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.7G214300_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1 Prupe.8G128100_v2.0.a1
pyrus_communis pycom02g05780 pycom05g08090 pycom10g08030
rosa_chinensis RchiOBHm_Chr2g0092641 RchiOBHm_Chr2g0092651 RchiOBHm_Chr2g0092661 RchiOBHm_Chr2g0092671 RchiOBHm_Chr2g0092711 RchiOBHm_Chr2g0092721 RchiOBHm_Chr2g0102321 RchiOBHm_Chr3g0467881 RchiOBHm_Chr6g0256691
rosa_laevigata RLG00000014741 RLG00000016330 RLG00000016331 RLG00000016332 RLG00000016334 RLG00000016335 RLG00000029637
rosa_multiflora Rmu_sc0001132.1_g000016 Rmu_sc0001132.1_g000022 Rmu_sc0001793.1_g000037 Rmu_sc0005055.1_g000009 Rmu_sc0010161.1_g000022 Rmu_sc0017518.1_g000002 Rmu_sc0017518.1_g000003 Rmu_sc0032103.1_g000001
rosa_roxburghii Rroxscaffold_2G00140570 Rroxscaffold_5G00382650 Rroxscaffold_6G00413380 Rroxscaffold_7G00209130
rosa_rugosa Rorug02G0028400 Rorug02G0028900 Rorug02G0029000 Rorug02G0029100 Rorug02G0106500 Rorug05G0266900 Rorug05G0565700
rosa_samantha Rh1BG085800 Rh2AG074200 Rh2AG074300 Rh2AG074400 Rh2AG074600 Rh2AG154600 Rh2BG160700 Rh2CG076900 Rh2CG077000 Rh2CG077100 Rh2CG077300 Rh2CG077400 Rh2CG077500 Rh2CG160400 Rh3BG159900 Rh3CG160000 Rh3DG160600 Rh5CG376400 Rh6AG083700 Rh6BG078200 Rh6CG072800 Rh6DG070000
rosa_wichuraiana Rw2G005850 Rw2G005870 Rw2G005880 Rw2G012080 Rw3G013130 Rw6G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 483
AfiI CCNNNNNNNGG 3 cut(s) 127, 305, 385
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 118, 172
AvaII GGWCC 2 cut(s) 118, 172
BccI CCATC 1 cut(s) 296
BclI TGATCA 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 473
Bme18I GGWCC 2 cut(s) 118, 172
BmgT120I GGNCC 2 cut(s) 118, 172
BmsI GCATC 1 cut(s) 340
BsaAI YACGTR 3 cut(s) 43, 97, 151
BsaI GGTCTC 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 305, 385
Bse1I ACTGG 4 cut(s) 48, 102, 156, 268
BseDI CCNNGG 1 cut(s) 200
BseLI CCNNNNNNNGG 3 cut(s) 127, 305, 385
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 4 cut(s) 48, 102, 156, 268
BseRI GAGGAG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 3 cut(s) 127, 305, 385
BsmAI GTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 460
Bso31I GGTCTC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 399
BspCNI CTCAG 1 cut(s) 469
BspTNI GGTCTC 1 cut(s) 473
BsrI ACTGG 4 cut(s) 48, 102, 156, 268
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 7 cut(s) 14, 56, 62, 68, 110, 164, 451
BstBAI YACGTR 3 cut(s) 43, 97, 151
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 477
BstKTI GATC 1 cut(s) 402
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 1 cut(s) 399
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 4 cut(s) 31, 85, 139, 282
Cac8I GCNNGC 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 118, 172
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 6 cut(s) 31, 85, 127, 139, 181, 208
CviJI RGCY 3 cut(s) 267, 313, 319
CviKI_1 RGCY 3 cut(s) 267, 313, 319
DdeI CTNAG 1 cut(s) 477
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 473
Eco47I GGWCC 2 cut(s) 118, 172
Eco57I CTGAAG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 6 cut(s) 34, 88, 130, 142, 184, 211
FaiI YATR 7 cut(s) 32, 86, 128, 140, 182, 209, 426
FaqI GGGAC 1 cut(s) 460
FatI CATG 6 cut(s) 30, 84, 126, 138, 180, 207
FbaI TGATCA 1 cut(s) 399
Hin1II CATG 6 cut(s) 34, 88, 130, 142, 184, 211
HinfI GANTC 1 cut(s) 295
Hpy188III TCNNGA 2 cut(s) 299, 476
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 7 cut(s) 14, 56, 62, 68, 110, 164, 451
HpyCH4IV ACGT 3 cut(s) 42, 96, 150
HpyCH4V TGCA 2 cut(s) 184, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 3 cut(s) 42, 96, 150
Hsp92II CATG 6 cut(s) 34, 88, 130, 142, 184, 211
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 1 cut(s) 399
LpnPI CCDG 9 cut(s) 61, 115, 169, 249, 305, 312, 327, 474, 489
LweI GCATC 1 cut(s) 340
MaeII ACGT 3 cut(s) 42, 96, 150
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MboII GAAGA 2 cut(s) 476, 479
MfeI CAATTG 2 cut(s) 193, 367
MluCI AATT 5 cut(s) 193, 225, 249, 367, 373
MnlI CCTC 2 cut(s) 290, 437
MroXI GAANNNNTTC 1 cut(s) 471
MunI CAATTG 2 cut(s) 193, 367
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 1 cut(s) 399
NlaIII CATG 6 cut(s) 34, 88, 130, 142, 184, 211
NmuCI GTSAC 8 cut(s) 26, 43, 80, 97, 122, 134, 151, 176
NspI RCATGY 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 1 cut(s) 295
PflFI GACNNNGTC 4 cut(s) 32, 86, 128, 140
Ppu21I YACGTR 3 cut(s) 43, 97, 151
PspPI GGNCC 2 cut(s) 118, 172
PsyI GACNNNGTC 4 cut(s) 32, 86, 128, 140
Sau3AI GATC 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 118, 172
SetI ASST 5 cut(s) 45, 99, 153, 321, 463
SfaNI GCATC 1 cut(s) 340
SinI GGWCC 2 cut(s) 118, 172
Sse9I AATT 5 cut(s) 193, 225, 249, 367, 373
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 7 cut(s) 14, 56, 62, 68, 110, 164, 451
TaiI ACGT 3 cut(s) 45, 99, 153
TasI AATT 5 cut(s) 193, 225, 249, 367, 373
TfiI GAWTC 1 cut(s) 295
TscAI CASTG 4 cut(s) 31, 85, 139, 289
TseFI GTSAC 8 cut(s) 26, 43, 80, 97, 122, 134, 151, 176
Tsp45I GTSAC 8 cut(s) 26, 43, 80, 97, 122, 134, 151, 176
TspDTI ATGAA 2 cut(s) 196, 407
TspGWI ACGGA 2 cut(s) 110, 164
TspRI CASTG 4 cut(s) 31, 85, 139, 289
Tth111I GACNNNGTC 4 cut(s) 32, 86, 128, 140
VpaK11BI GGWCC 2 cut(s) 118, 172
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.