RchiOBHm_Chr1g0319861

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000877
Physical Location & Seq
Reverse (-)
7469843 .. 7474159
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1203 bp
ATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTACATATGGAATTAGGAGCCTTTCATGGTGGCTCACTAGGGTCACCCTTCTCCATCAGCGCATTCTCGATGAGAGTTATTGGGGTAAGGATTTGCGTAATGGCGAGGGATTGACACTTGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAACACATCTATGCACGTGTTGATTCCTGCAGCGCTGGTGTTAAGCATTCAGTTACAGGGGTTCTTGGCTTCCATACTATACATCAGGTCGAACCAAAGGCACAAATGGTACTTTTATCAAACACAACTTCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATATGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTTCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGATGGGATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCACACATTGAGGTAATTGATTCTCAGCTATCATCATATTTTATTGATAGGGATATTGAGAAGGCACTAGATGGCCTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGAGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATGGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGCTCTAGAAGCTACGCGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCGTGGCTTCACCTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGGTGCATTTCACTTCTACTTGTGCTTCCCTAACTCAAATCTGTGTATACTTTTCTACTAAAAACGACGCAAACTATCTAGTATCTAGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

400

Amino Acids

44.26

Weight (kDa)

5.45

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1155
AccII CGCG 2 cut(s) 586, 892
AciI CCGC 1 cut(s) 892
AclWI GGATC 3 cut(s) 544, 710, 912
AcuI CTGAAG 1 cut(s) 830
AcvI CACGTG 1 cut(s) 209
AfaI GTAC 3 cut(s) 43, 303, 511
AfeI AGCGCT 1 cut(s) 226
AfiI CCNNNNNNNGG 4 cut(s) 700, 725, 1025, 1026
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 4 cut(s) 26, 450, 500, 817
AjnI CCWGG 2 cut(s) 358, 552
AluBI AGCT 7 cut(s) 182, 646, 712, 785, 828, 887, 1070
AluI AGCT 7 cut(s) 182, 646, 712, 785, 828, 887, 1070
Alw21I GWGCWC 2 cut(s) 584, 1077
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 3 cut(s) 544, 710, 912
AlwNI CAGNNNCTG 1 cut(s) 1046
Ama87I CYCGRG 2 cut(s) 699, 1062
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 2 cut(s) 361, 691
ApeKI GCWGC 2 cut(s) 222, 515
AspLEI GCGC 2 cut(s) 102, 227
AspS9I GGNCC 2 cut(s) 362, 1029
AsuHPI GGTGA 2 cut(s) 76, 969
AvaI CYCGRG 2 cut(s) 699, 1062
AvaII GGWCC 1 cut(s) 1029
BanII GRGCYC 1 cut(s) 340
BbrPI CACGTG 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 584, 1077
BbvI GCAGC 2 cut(s) 234, 502
BccI CCATC 8 cut(s) 102, 184, 418, 485, 546, 600, 683, 998
BciT130I CCWGG 2 cut(s) 360, 554
BcoDI GTCTC 1 cut(s) 166
BfaI CTAG 5 cut(s) 78, 686, 881, 1187, 1194
BfmI CTRYAG 2 cut(s) 220, 847
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 2 cut(s) 223, 516
BlpI GCTNAGC 1 cut(s) 1071
BlsI GCNGC 2 cut(s) 224, 517
Bme1390I CCNGG 2 cut(s) 360, 554
Bme18I GGWCC 1 cut(s) 1029
BmeT110I CYCGRG 2 cut(s) 699, 1062
BmgT120I GGNCC 2 cut(s) 362, 1029
BmiI GGNNCC 3 cut(s) 59, 618, 1030
BmrFI CCNGG 2 cut(s) 360, 554
BmsI GCATC 2 cut(s) 415, 919
BoxI GACNNNNGTC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BpmI CTGGAG 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 1071
BsaAI YACGTR 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 4 cut(s) 700, 725, 1025, 1026
Bse3DI GCAATG 2 cut(s) 880, 999
BseBI CCWGG 2 cut(s) 360, 554
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 4 cut(s) 700, 725, 1025, 1026
BseMI GCAATG 2 cut(s) 880, 999
BseMII CTCAG 5 cut(s) 177, 405, 656, 924, 1062
BseXI GCAGC 2 cut(s) 234, 502
Bsh1236I CGCG 2 cut(s) 586, 892
BshFI GGCC 2 cut(s) 363, 693
BsiHKAI GWGCWC 2 cut(s) 584, 1077
BsiHKCI CYCGRG 2 cut(s) 699, 1062
BslFI GGGAC 2 cut(s) 403, 1042
BslI CCNNNNNNNGG 4 cut(s) 700, 725, 1025, 1026
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 403, 1042
BsmI GAATGC 2 cut(s) 102, 238
BsnI GGCC 2 cut(s) 363, 693
BsoBI CYCGRG 2 cut(s) 699, 1062
Bsp1286I GDGCHC 3 cut(s) 340, 584, 1077
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 3 cut(s) 549, 715, 904
Bsp1720I GCTNAGC 1 cut(s) 1071
BspACI CCGC 1 cut(s) 892
BspANI GGCC 2 cut(s) 363, 693
BspCNI CTCAG 5 cut(s) 176, 406, 655, 925, 1063
BspFNI CGCG 2 cut(s) 586, 892
BspLI GGNNCC 3 cut(s) 59, 618, 1030
BspMAI CTGCAG 1 cut(s) 224
BspPI GGATC 3 cut(s) 544, 710, 912
BspQI GCTCTTC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 880, 999
BsrGI TGTACA 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 3 cut(s) 549, 715, 904
BssNAI GTATAC 1 cut(s) 1156
Bst1107I GTATAC 1 cut(s) 1156
Bst2UI CCWGG 2 cut(s) 360, 554
Bst4CI ACNGT 1 cut(s) 837
Bst6I CTCTTC 2 cut(s) 572, 767
BstAUI TGTACA 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 7 cut(s) 163, 402, 414, 642, 933, 1071, 1078
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 586, 892
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 102, 227
BstKTI GATC 3 cut(s) 552, 718, 907
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 3 cut(s) 549, 715, 904
BstMWI GCNNNNNNNGC 2 cut(s) 791, 884
BstNI CCWGG 2 cut(s) 360, 554
BstNSI RCATGY 1 cut(s) 601
BstPAI GACNNNNGTC 1 cut(s) 158
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 358, 552
BstSFI CTRYAG 2 cut(s) 220, 847
BstUI CGCG 2 cut(s) 586, 892
BstV1I GCAGC 2 cut(s) 234, 502
BstX2I RGATCY 1 cut(s) 904
BstYI RGATCY 1 cut(s) 904
BstZ17I GTATAC 1 cut(s) 1156
BsuRI GGCC 2 cut(s) 363, 693
BtsCI GGATG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 4 cut(s) 171, 552, 806, 1030
Cac8I GCNNGC 1 cut(s) 584
CaiI CAGNNNCTG 1 cut(s) 1046
CfoI GCGC 2 cut(s) 102, 227
Cfr13I GGNCC 2 cut(s) 362, 1029
CseI GACGC 1 cut(s) 1184
Csp6I GTAC 3 cut(s) 42, 302, 510
CviAII CATG 6 cut(s) 66, 422, 590, 598, 735, 854
CviQI GTAC 3 cut(s) 42, 302, 510
DdeI CTNAG 7 cut(s) 163, 402, 414, 642, 933, 1071, 1078
DpnI GATC 3 cut(s) 551, 717, 906
DpnII GATC 3 cut(s) 549, 715, 904
Eam1104I CTCTTC 2 cut(s) 572, 767
EarI CTCTTC 2 cut(s) 572, 767
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 1029
Eco47III AGCGCT 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 830
Eco72I CACGTG 1 cut(s) 209
Eco88I CYCGRG 2 cut(s) 699, 1062
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 358, 552
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 6 cut(s) 69, 425, 593, 601, 738, 857
FalI AAGNNNNNCTT 4 cut(s) 22, 54, 958, 990
FaqI GGGAC 2 cut(s) 403, 1042
FatI CATG 6 cut(s) 65, 421, 589, 597, 734, 853
FauNDI CATATG 2 cut(s) 46, 759
FblI GTMKAC 1 cut(s) 1155
Fnu4HI GCNGC 2 cut(s) 223, 516
FokI GGATG 1 cut(s) 393
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 223, 516
FspBI CTAG 5 cut(s) 78, 686, 881, 1187, 1194
GlaI GCGC 2 cut(s) 101, 226
GluI GCNGC 2 cut(s) 223, 516
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 363, 693
HgaI GACGC 1 cut(s) 1184
HhaI GCGC 2 cut(s) 102, 227
Hin1II CATG 6 cut(s) 69, 425, 593, 601, 738, 857
Hin6I GCGC 2 cut(s) 100, 225
HinP1I GCGC 2 cut(s) 100, 225
HindIII AAGCTT 1 cut(s) 783
HinfI GANTC 8 cut(s) 169, 215, 377, 416, 473, 496, 638, 1043
HphI GGTGA 2 cut(s) 76, 969
Hpy166II GTNNAC 1 cut(s) 1156
Hpy188I TCNGA 5 cut(s) 352, 415, 433, 490, 1048
Hpy188III TCNNGA 7 cut(s) 107, 176, 450, 477, 719, 881, 1064
Hpy8I GTNNAC 1 cut(s) 1156
Hpy99I CGWCG 1 cut(s) 1178
HpyAV CCTTC 5 cut(s) 20, 98, 575, 673, 889
HpyCH4III ACNGT 1 cut(s) 837
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 7 cut(s) 206, 222, 533, 601, 757, 1040, 1114
HpyF10VI GCNNNNNNNGC 2 cut(s) 791, 884
HpyF3I CTNAG 7 cut(s) 163, 402, 414, 642, 933, 1071, 1078
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 6 cut(s) 69, 425, 593, 601, 738, 857
HspAI GCGC 2 cut(s) 100, 225
Kzo9I GATC 3 cut(s) 549, 715, 904
LguI GCTCTTC 1 cut(s) 572
LmnI GCTCC 2 cut(s) 57, 622
Lsp1109I GCAGC 2 cut(s) 234, 502
LweI GCATC 2 cut(s) 415, 919
MaeI CTAG 5 cut(s) 78, 686, 881, 1187, 1194
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 2 cut(s) 82, 244
MalI GATC 3 cut(s) 551, 717, 906
MboI GATC 3 cut(s) 549, 715, 904
MboII GAAGA 3 cut(s) 16, 589, 784
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 3 cut(s) 340, 584, 1077
MluCI AATT 6 cut(s) 51, 570, 633, 924, 948, 985
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 2 cut(s) 882, 921
MnlI CCTC 8 cut(s) 139, 358, 375, 418, 622, 704, 724, 952
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 2 cut(s) 201, 372
MspR9I CCNGG 2 cut(s) 360, 554
Mva1269I GAATGC 2 cut(s) 102, 238
MvaI CCWGG 2 cut(s) 360, 554
MvnI CGCG 2 cut(s) 586, 892
MwoI GCNNNNNNNGC 2 cut(s) 791, 884
NdeI CATATG 2 cut(s) 46, 759
NdeII GATC 3 cut(s) 549, 715, 904
NlaIII CATG 6 cut(s) 69, 425, 593, 601, 738, 857
NlaIV GGNNCC 3 cut(s) 59, 618, 1030
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 572
PctI GAATGC 2 cut(s) 102, 238
PfeI GAWTC 7 cut(s) 169, 215, 377, 473, 496, 638, 1043
PkrI GCNGC 2 cut(s) 224, 517
PleI GAGTC 1 cut(s) 424
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 209
PshAI GACNNNNGTC 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 358, 552
PspCI CACGTG 1 cut(s) 209
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 2 cut(s) 358, 552
PspN4I GGNNCC 3 cut(s) 59, 618, 1030
PspPI GGNCC 2 cut(s) 362, 1029
PstI CTGCAG 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 1 cut(s) 904
RsaI GTAC 3 cut(s) 43, 303, 511
RsaNI GTAC 3 cut(s) 42, 302, 510
RseI CAYNNNNRTG 2 cut(s) 201, 372
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 223, 516
Sau3AI GATC 3 cut(s) 549, 715, 904
Sau96I GGNCC 2 cut(s) 362, 1029
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 360, 554
SduI GDGCHC 3 cut(s) 340, 584, 1077
SfaNI GCATC 2 cut(s) 415, 919
SfcI CTRYAG 2 cut(s) 220, 847
SinI GGWCC 1 cut(s) 1029
SmiMI CAYNNNNRTG 2 cut(s) 201, 372
Sse9I AATT 6 cut(s) 51, 570, 633, 924, 948, 985
SsiI CCGC 1 cut(s) 892
SspI AATATT 1 cut(s) 745
SspMI CTAG 5 cut(s) 78, 686, 881, 1187, 1194
StyD4I CCNGG 2 cut(s) 358, 552
TaaI ACNGT 1 cut(s) 837
TaiI ACGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 108, 282
TasI AATT 6 cut(s) 51, 570, 633, 924, 948, 985
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 7 cut(s) 169, 215, 377, 473, 496, 638, 1043
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 4 cut(s) 171, 552, 813, 1030
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 222, 515
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 5 cut(s) 17, 23, 54, 161, 312
TspRI CASTG 4 cut(s) 171, 552, 813, 1030
VpaK11BI GGWCC 1 cut(s) 1029
XbaI TCTAGA 1 cut(s) 880
XceI RCATGY 1 cut(s) 601
XmiI GTMKAC 1 cut(s) 1155
XspI CTAG 5 cut(s) 78, 686, 881, 1187, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.