Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000877

Physical Location & Seq

Genomic Coordinates Reverse (-)

7446444 .. 7451616

Gene Structure 5173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55001

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGACGGTAATAAATGTTGGTTCATATTGTAAAAGTTTGAATCTGGATAGAACGGAACTTTTGTGGTGGGTAAGACAATGGAGATACTACGATGCTGTGATGTCCTACGTATTCGGTGCATGGGAGTCGAGATGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATTGGTTCAGGGCATCAACGATCCCTCTCCAGGAGTGGCAGTCAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCGTTGGGTGACGTTACTGATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTCTCAAACGATAGGTCGGCTCGGGCTAAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTCGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTAGATCCTGAAAATGGGGAGGCATGGAATAATATCGCCTGTTTGCATATGATAAAAGGGAAGAGAAAAGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCAAGTGCTTTCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

278

Amino Acids

31.53

Weight (kDa)

5.58

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17270 AT5G17270 AT5G37130
fragaria_vesca	FvH4_7g02460
malus_domestica	MD10G1031900.v1.1
prunus_persica	Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1
pyrus_communis	pycom10g02020
rosa_chinensis	RchiOBHm_Chr1g0319751 RchiOBHm_Chr1g0319761 RchiOBHm_Chr1g0319801 RchiOBHm_Chr1g0319811 RchiOBHm_Chr1g0319861 RchiOBHm_Chr1g0320041 RchiOBHm_Chr1g0320601 RchiOBHm_Chr1g0320761 RchiOBHm_Chr1g0320781 RchiOBHm_Chr1g0320901 RchiOBHm_Chr1g0320911 RchiOBHm_Chr1g0321111
rosa_laevigata	RLG00000030451 RLG00000030455 RLG00000030458
rosa_multiflora	Rmu_sc0001512.1_g000008 Rmu_sc0001722.1_g000001 Rmu_sc0002745.1_g000001 Rmu_sc0002745.1_g000003 Rmu_sc0003446.1_g000001 Rmu_sc0004660.1_g000001 Rmu_sc0004660.1_g000005 Rmu_sc0004820.1_g000017 Rmu_sc0004820.1_g000018 Rmu_sc0007977.1_g000013
rosa_roxburghii	Rroxscaffold_160G00433640 Rroxscaffold_160G00433720 Rroxscaffold_2G00104290 Rroxscaffold_4G00328090 Rroxscaffold_4G00328120
rosa_rugosa	Rorug01G0030000 Rorug01G0030900 Rorug01G0055500
rosa_samantha	Rh1AG042000 Rh1AG043000 Rh1BG039700 Rh1CG043000 Rh1CG044900 Rh1CG045000 Rh1CG045100 Rh1DG022800 Rh1DG026100 Rh1DG047800 Rh1DG048100 Rh1DG048200 Rh1DG048900 Rh1DG049000 Rh1DG049400 Rh1DG049500 Rh1DG049700
rosa_wichuraiana	Rw0G001090 Rw0G001120 Rw1G003620 Rw1G003650 Rw1G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	444
AciI	CCGC	2 cut(s)	265, 292
AclWI	GGATC	2 cut(s)	188, 644
AcsI	RAATTY	2 cut(s)	321, 547
AcuI	CTGAAG	1 cut(s)	764
AfiI	CCNNNNNNNGG	3 cut(s)	203, 444, 659
AgsI	TTSAA	5 cut(s)	40, 398, 488, 547, 751
AjnI	CCWGG	2 cut(s)	202, 437
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	4 cut(s)	392, 646, 719, 762
AluI	AGCT	4 cut(s)	392, 646, 719, 762
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	2 cut(s)	188, 644
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	522
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	4 cut(s)	386, 389, 584, 587
ApoI	RAATTY	2 cut(s)	321, 547
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AspA2I	CCTAGG	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	290, 470
AvaI	CYCGRG	1 cut(s)	522
AvrII	CCTAGG	1 cut(s)	577
BbvI	GCAGC	4 cut(s)	398, 401, 571, 574
BccI	CCATC	3 cut(s)	160, 557, 617
BceAI	ACGGC	1 cut(s)	428
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	2 cut(s)	204, 439
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	4 cut(s)	497, 578, 620, 647
BfmI	CTRYAG	3 cut(s)	249, 364, 781
BfuI	GTATCC	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	581
BisI	GCNGC	4 cut(s)	387, 390, 585, 588
BlnI	CCTAGG	1 cut(s)	577
BlsI	GCNGC	4 cut(s)	388, 391, 586, 589
Bme1390I	CCNGG	2 cut(s)	204, 439
BmeT110I	CYCGRG	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	204, 439
BmsI	GCATC	3 cut(s)	82, 195, 466
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	816
BsaAI	YACGTR	1 cut(s)	109
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	437, 577
BsaXI	ACNNNNNCTCC	4 cut(s)	198, 228, 300, 330
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 444, 659
Bse3DI	GCAATG	3 cut(s)	543, 723, 814
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	204, 439
BseDI	CCNNGG	2 cut(s)	437, 577
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	203, 444, 659
BseMI	GCAATG	3 cut(s)	543, 723, 814
BseMII	CTCAG	1 cut(s)	830
BseXI	GCAGC	4 cut(s)	398, 401, 571, 574
BshFI	GGCC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	522
BslI	CCNNNNNNNGG	3 cut(s)	203, 444, 659
BsmAI	GTCTC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	193, 402, 649
BspACI	CCGC	2 cut(s)	265, 292
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	1 cut(s)	829
BspPI	GGATC	2 cut(s)	188, 644
BsrDI	GCAATG	3 cut(s)	543, 723, 814
BssECI	CCNNGG	2 cut(s)	437, 577
BssMI	GATC	3 cut(s)	193, 402, 649
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	2 cut(s)	204, 439
Bst4CI	ACNGT	4 cut(s)	7, 253, 278, 771
Bst6I	CTCTTC	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	2 cut(s)	528, 816
BstKTI	GATC	3 cut(s)	196, 405, 652
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	3 cut(s)	193, 402, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 581, 725
BstNI	CCWGG	2 cut(s)	204, 439
BstSCI	CCNGG	2 cut(s)	202, 437
BstSFI	CTRYAG	3 cut(s)	249, 364, 781
BstSNI	TACGTA	1 cut(s)	109
BstV1I	GCAGC	4 cut(s)	398, 401, 571, 574
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	542
BtsIMutI	CAGTG	1 cut(s)	740
Cac8I	GCNNGC	1 cut(s)	481
CaiI	CAGNNNCTG	1 cut(s)	392
CviAII	CATG	3 cut(s)	120, 669, 788
DdeI	CTNAG	2 cut(s)	528, 816
DpnI	GATC	3 cut(s)	195, 404, 651
DpnII	GATC	3 cut(s)	193, 402, 649
Eam1104I	CTCTTC	1 cut(s)	701
EarI	CTCTTC	1 cut(s)	701
Eco105I	TACGTA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	764
Eco88I	CYCGRG	1 cut(s)	522
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	202, 437
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	3 cut(s)	123, 672, 791
FatI	CATG	3 cut(s)	119, 668, 787
FauNDI	CATATG	1 cut(s)	693
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	387, 390, 585, 588
Fsp4HI	GCNGC	4 cut(s)	387, 390, 585, 588
FspBI	CTAG	4 cut(s)	497, 578, 620, 647
GluI	GCNGC	4 cut(s)	387, 390, 585, 588
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	542
Hin1II	CATG	3 cut(s)	123, 672, 791
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	3 cut(s)	40, 125, 220
HphI	GGTGA	2 cut(s)	290, 470
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	2 cut(s)	303, 421
Hpy188III	TCNNGA	6 cut(s)	44, 129, 217, 406, 560, 653
Hpy8I	GTNNAC	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	262, 607
HpyCH4III	ACNGT	4 cut(s)	7, 253, 278, 771
HpyCH4IV	ACGT	3 cut(s)	108, 151, 462
HpyCH4V	TGCA	6 cut(s)	119, 155, 536, 590, 691, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 581, 725
HpyF3I	CTNAG	2 cut(s)	528, 816
HpySE526I	ACGT	3 cut(s)	108, 151, 462
Hsp92II	CATG	3 cut(s)	123, 672, 791
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	193, 402, 649
Lsp1109I	GCAGC	4 cut(s)	398, 401, 571, 574
LweI	GCATC	3 cut(s)	82, 195, 466
MaeI	CTAG	4 cut(s)	497, 578, 620, 647
MaeII	ACGT	3 cut(s)	108, 151, 462
MaeIII	GTNAC	3 cut(s)	137, 458, 463
MalI	GATC	3 cut(s)	195, 404, 651
MboI	GATC	3 cut(s)	193, 402, 649
MboII	GAAGA	1 cut(s)	718
MflI	RGATCY	1 cut(s)	649
MluCI	AATT	3 cut(s)	321, 338, 547
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	4 cut(s)	208, 304, 322, 658
MseI	TTAA	1 cut(s)	593
MspA1I	CMGCKG	2 cut(s)	294, 392
MspR9I	CCNGG	2 cut(s)	204, 439
MvaI	CCWGG	2 cut(s)	204, 439
MwoI	GCNNNNNNNGC	3 cut(s)	533, 581, 725
NdeI	CATATG	1 cut(s)	693
NdeII	GATC	3 cut(s)	193, 402, 649
NlaIII	CATG	3 cut(s)	123, 672, 791
NmuCI	GTSAC	2 cut(s)	137, 458
PfeI	GAWTC	2 cut(s)	40, 220
PflMI	CCANNNNNTGG	1 cut(s)	444
PfoI	TCCNGGA	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	388, 391, 586, 589
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	109
Psp6I	CCWGG	2 cut(s)	202, 437
PspGI	CCWGG	2 cut(s)	202, 437
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	4 cut(s)	387, 390, 585, 588
Sau3AI	GATC	3 cut(s)	193, 402, 649
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	204, 439
SfaNI	GCATC	3 cut(s)	82, 195, 466
SfcI	CTRYAG	3 cut(s)	249, 364, 781
SnaBI	TACGTA	1 cut(s)	109
Sse9I	AATT	3 cut(s)	321, 338, 547
SsiI	CCGC	2 cut(s)	265, 292
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	4 cut(s)	497, 578, 620, 647
StyD4I	CCNGG	2 cut(s)	202, 437
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	4 cut(s)	7, 253, 278, 771
TaiI	ACGT	3 cut(s)	111, 154, 465
TaqI	TCGA	1 cut(s)	128
TasI	AATT	3 cut(s)	321, 338, 547
TfiI	GAWTC	2 cut(s)	40, 220
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TscAI	CASTG	1 cut(s)	747
TseFI	GTSAC	2 cut(s)	137, 458
TseI	GCWGC	4 cut(s)	386, 389, 584, 587
Tsp45I	GTSAC	2 cut(s)	137, 458
TspDTI	ATGAA	2 cut(s)	12, 712
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	747
Van91I	CCANNNNNTGG	1 cut(s)	444
XapI	RAATTY	2 cut(s)	321, 547
XmaJI	CCTAGG	1 cut(s)	577
XspI	CTAG	4 cut(s)	497, 578, 620, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.