Rh1DG049700

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Reverse (-)
8073767 .. 8088377
14611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG049700.1

Sequence Viewer

Length: 2736 bp
ATGTCTGAACCGTCACCGGACCTCGCTATCCTCCGCGGCTACGAGCTCCGTCTCCTCCGCTGCACCTTCCTCTCTCCTCCTCCGCCGTCCGATCCTGAACAACCGTCCGATCAAACCTCGCCCACTCACCTCCTCTCCCCTCTAATCTCCGCCCTCCTCACTTCCATCGAGTCCGGCCGATACCTCGAAGCCCTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAACTCACCGATTCCGACTCGCTCGGCGACCACGACGCCGACCGAGTCTACTCCGAGTTGCTCCGCCGCGTGGAGTCGTTCATATGCGAAGAAGCTGAGGATAATGGGAAGGACCAGGCCTATAGAGTCGTCGTCGTACTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTTTGGAGGGGCTGCCAAGGTGTCCGTTGCCACTGGAAGTGCCCTTATGTGATGAATGGGACAATTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCACTAGGGTCACCCTTCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTTTGTTTGACCTTTTGCATGTCTTCACAAGTGAAACTTTGAACCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACACTTGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCCTGCAGGTTGCATTTTGAATCAGCTGAAGCAGCGGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGGTCGAACCAAAGGCACAAATGGTACTTTTAGCAAATGCAACTTCGTCAGAGAGTGGGGCTCTCTGCTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCACGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTACTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGAGACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATCGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATATGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATATTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTTTCAAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATTGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTCTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTACATGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATCACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGTAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGATAGTCCGAAGTGGAAATGGAGCAGATATTTGGGGCATGTATGCTAGATGGCAAAAAATGAAAGGAGACCTTGCGATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGAGCTGATTTGTGGAAAGATAGAGATCGGTTTAAAAAGTTTGCAAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCGTCTACTGGCAGCCGTGATGAACTTCTCTCAGCTGAAAGGCACCTAAGGAACATAATTAAACAGGCGGGGAGTTTCTCAGACATGGAAGAACTTCAACATCTTAAAGCCTGCCTTGATGAAGTGAAGTTAAATCTTGATTCTGATAGTGCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

911

Amino Acids

101.89

Weight (kDa)

5.35

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_CcmH_CycH PF23914 628 - 721 1e-05 Cytochrome c-type biogenesis protein H TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 2616
AccB7I CCANNNNNTGG 1 cut(s) 1701
AccBSI CCGCTC 1 cut(s) 688
AccI GTMKAC 2 cut(s) 273, 2579
AccII CGCG 4 cut(s) 36, 294, 490, 1267
AclWI GGATC 5 cut(s) 86, 811, 1225, 1964, 2175
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 1867
AcuI CTGAAG 2 cut(s) 918, 2084
AcvI CACGTG 1 cut(s) 863
AcyI GRCGYC 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 1805
AfaI GTAC 4 cut(s) 363, 949, 984, 1192
AfiI CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
AflIII ACRYGT 1 cut(s) 862
AjnI CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
AleI CACNNNNGTG 1 cut(s) 2222
AloI GAACNNNNNNTCC 2 cut(s) 1530, 1562
Alw21I GWGCWC 3 cut(s) 48, 1265, 2337
Alw26I GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
AlwI GGATC 5 cut(s) 86, 811, 1225, 1964, 2175
AlwNI CAGNNNCTG 3 cut(s) 908, 1649, 2306
Ama87I CYCGRG 3 cut(s) 1779, 1953, 2322
AoxI GGCC 4 cut(s) 175, 342, 1042, 1860
ApoI RAATTY 1 cut(s) 1867
ArsI GACNNNNNNTTYG 2 cut(s) 1757, 1789
Asp700I GAANNNNTTC 1 cut(s) 2667
AspA2I CCTAGG 1 cut(s) 1897
AspLEI GCGC 2 cut(s) 490, 675
AspS9I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
AsuHPI GGTGA 8 cut(s) 6, 119, 187, 223, 649, 1547, 1727, 2232
AvaI CYCGRG 3 cut(s) 1779, 1953, 2322
AvaII GGWCC 4 cut(s) 19, 337, 416, 2289
AvrII CCTAGG 1 cut(s) 1897
AxyI CCTNAGG 1 cut(s) 2621
BaeGI GKGCMC 1 cut(s) 462
BanI GGYRCC 1 cut(s) 2616
BanII GRGCYC 3 cut(s) 48, 1021, 1455
BauI CACGAG 1 cut(s) 1103
BbrPI CACGTG 1 cut(s) 863
BbsI GAAGAC 3 cut(s) 214, 684, 712
Bbv12I GWGCWC 3 cut(s) 48, 1265, 2337
BbvCI CCTCAGC 1 cut(s) 321
BceAI ACGGC 5 cut(s) 70, 359, 1189, 1685, 2574
BciT130I CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BciVI GTATCC 1 cut(s) 1887
BclI TGATCA 1 cut(s) 1659
BcoDI GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
BfaI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
BfmI CTRYAG 5 cut(s) 346, 874, 1506, 1621, 2101
BfuAI ACCTGC 1 cut(s) 867
BfuI GTATCC 1 cut(s) 1887
BglI GCCNNNNNGGC 1 cut(s) 1901
BlnI CCTAGG 1 cut(s) 1897
BlpI GCTNAGC 2 cut(s) 1785, 2331
Bme1390I CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
Bme18I GGWCC 4 cut(s) 19, 337, 416, 2289
BmeT110I CYCGRG 3 cut(s) 1779, 1953, 2322
BmgT120I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
BmiI GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
BmrFI CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BmsI GCATC 4 cut(s) 1096, 1343, 1723, 2182
BoxI GACNNNNGTC 1 cut(s) 812
BpiI GAAGAC 3 cut(s) 214, 684, 712
BplI GAGNNNNNCTC 2 cut(s) 1003, 1035
BpmI CTGGAG 2 cut(s) 1179, 1443
Bpu10I CCTNAGC 2 cut(s) 321, 2136
Bpu1102I GCTNAGC 2 cut(s) 1785, 2331
BsaAI YACGTR 2 cut(s) 863, 1370
BsaBI GATNNNNATC 2 cut(s) 1499, 2511
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 2 cut(s) 1797, 2430
BsaJI CCNNGG 7 cut(s) 34, 434, 1039, 1694, 1897, 2485, 2541
BsaWI WCCGGW 2 cut(s) 16, 413
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 1557, 1587
Bsc4I CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 456, 2587
Bse21I CCTNAGG 1 cut(s) 2621
Bse3DI GCAATG 4 cut(s) 369, 1863, 2134, 2262
Bse8I GATNNNNATC 2 cut(s) 1499, 2511
BseBI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BseDI CCNNGG 7 cut(s) 34, 434, 1039, 1694, 1897, 2485, 2541
BseGI GGATG 1 cut(s) 1087
BseJI GATNNNNATC 2 cut(s) 1499, 2511
BseLI CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
BseMI GCAATG 4 cut(s) 369, 1863, 2134, 2262
BseNI ACTGG 2 cut(s) 456, 2587
BseRI GAGGAG 6 cut(s) 44, 66, 69, 122, 146, 1018
BseSI GKGCMC 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 175
BsgI GTGCAG 2 cut(s) 46, 2470
Bsh1236I CGCG 4 cut(s) 36, 294, 490, 1267
Bsh1285I CGRYCG 2 cut(s) 178, 268
BshFI GGCC 4 cut(s) 177, 344, 1044, 1862
BshNI GGYRCC 1 cut(s) 2616
BsiEI CGRYCG 2 cut(s) 178, 268
BsiHKAI GWGCWC 3 cut(s) 48, 1265, 2337
BsiHKCI CYCGRG 3 cut(s) 1779, 1953, 2322
BsiSI CCGG 4 cut(s) 17, 174, 214, 414
BslFI GGGAC 3 cut(s) 491, 1084, 2302
BslI CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
BsmAI GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
BsmBI CGTCTC 2 cut(s) 56, 1381
BsmFI GGGAC 3 cut(s) 491, 1084, 2302
BsmI GAATGC 2 cut(s) 675, 1176
BsnI GGCC 4 cut(s) 177, 344, 1044, 1862
Bso31I GGTCTC 2 cut(s) 1797, 2430
BsoBI CYCGRG 3 cut(s) 1779, 1953, 2322
Bsp1286I GDGCHC 6 cut(s) 48, 462, 1021, 1265, 1455, 2337
Bsp143I GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
Bsp1720I GCTNAGC 2 cut(s) 1785, 2331
BspANI GGCC 4 cut(s) 177, 344, 1044, 1862
BspFNI CGCG 4 cut(s) 36, 294, 490, 1267
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
BspMAI CTGCAG 1 cut(s) 878
BspMI ACCTGC 1 cut(s) 867
BspPI GGATC 5 cut(s) 86, 811, 1225, 1964, 2175
BspQI GCTCTTC 1 cut(s) 1253
BspT107I GGYRCC 1 cut(s) 2616
BspTNI GGTCTC 2 cut(s) 1797, 2430
BsrBI CCGCTC 1 cut(s) 688
BsrDI GCAATG 4 cut(s) 369, 1863, 2134, 2262
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 2 cut(s) 456, 2587
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 7 cut(s) 34, 434, 1039, 1694, 1897, 2485, 2541
BssMI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 1103
BssT1I CCWWGG 3 cut(s) 434, 1897, 2541
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
Bst4CI ACNGT 4 cut(s) 12, 105, 1510, 2091
Bst6I CTCTTC 2 cut(s) 1253, 2021
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 1805
BstBAI YACGTR 2 cut(s) 863, 1370
BstC8I GCNNGC 5 cut(s) 511, 1265, 1738, 1801, 2686
BstDSI CCRYGG 1 cut(s) 34
BstEII GGTNACC 1 cut(s) 655
BstF5I GGATG 1 cut(s) 1087
BstFNI CGCG 4 cut(s) 36, 294, 490, 1267
BstHHI GCGC 2 cut(s) 490, 675
BstKTI GATC 9 cut(s) 94, 112, 806, 1233, 1662, 1972, 2170, 2480, 2515
BstMAI GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
BstMBI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
BstMCI CGRYCG 2 cut(s) 178, 268
BstMWI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1805, 1901, 2045, 2147
BstNI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BstNSI RCATGY 3 cut(s) 719, 1282, 2410
BstPAI GACNNNNGTC 1 cut(s) 812
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
BstSFI CTRYAG 5 cut(s) 346, 874, 1506, 1621, 2101
BstSLI GKGCMC 1 cut(s) 462
BstSNI TACGTA 1 cut(s) 1370
BstUI CGCG 4 cut(s) 36, 294, 490, 1267
BstV2I GAAGAC 3 cut(s) 214, 684, 712
BstX2I RGATCY 1 cut(s) 2167
BstYI RGATCY 1 cut(s) 2167
BstZI CGGCCG 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 2621
BsuI GTATCC 1 cut(s) 1887
BsuRI GGCC 4 cut(s) 177, 344, 1044, 1862
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 2459
BtsCI GGATG 1 cut(s) 1087
BtsI GCAGTG 2 cut(s) 1233, 1810
BtsIMutI CAGTG 6 cut(s) 449, 825, 1233, 1810, 2060, 2290
BveI ACCTGC 1 cut(s) 867
Cac8I GCNNGC 5 cut(s) 511, 1265, 1738, 1801, 2686
CaiI CAGNNNCTG 3 cut(s) 908, 1649, 2306
CciI TCATGA 1 cut(s) 573
CfoI GCGC 2 cut(s) 490, 675
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 2 cut(s) 215, 269
Csp6I GTAC 4 cut(s) 362, 948, 983, 1191
CviQI GTAC 4 cut(s) 362, 948, 983, 1191
DpnI GATC 9 cut(s) 93, 111, 805, 1232, 1661, 1971, 2169, 2479, 2514
DpnII GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
DraI TTTAAA 1 cut(s) 2521
DraIII CACNNNGTG 1 cut(s) 1805
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 1253, 2021
EarI CTCTTC 2 cut(s) 1253, 2021
EciI GGCGGA 4 cut(s) 72, 139, 190, 278
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 175
Eco105I TACGTA 1 cut(s) 1370
Eco130I CCWWGG 3 cut(s) 434, 1897, 2541
Eco147I AGGCCT 1 cut(s) 344
Eco24I GRGCYC 3 cut(s) 48, 1021, 1455
Eco31I GGTCTC 2 cut(s) 1797, 2430
Eco47I GGWCC 4 cut(s) 19, 337, 416, 2289
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 918, 2084
Eco72I CACGTG 1 cut(s) 863
Eco81I CCTNAGG 1 cut(s) 2621
Eco88I CYCGRG 3 cut(s) 1779, 1953, 2322
Eco91I GGTNACC 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 1867
EcoRII CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
EcoT14I CCWWGG 3 cut(s) 434, 1897, 2541
EcoT38I GRGCYC 3 cut(s) 48, 1021, 1455
ErhI CCWWGG 3 cut(s) 434, 1897, 2541
Esp3I CGTCTC 2 cut(s) 56, 1381
FaqI GGGAC 3 cut(s) 491, 1084, 2302
FauI CCCGC 1 cut(s) 2635
FauNDI CATATG 3 cut(s) 308, 619, 2013
FbaI TGATCA 1 cut(s) 1659
FblI GTMKAC 2 cut(s) 273, 2579
FokI GGATG 1 cut(s) 1074
FriOI GRGCYC 3 cut(s) 48, 1021, 1455
FspBI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
GlaI GCGC 2 cut(s) 489, 674
GsuI CTGGAG 2 cut(s) 1179, 1443
HaeIII GGCC 4 cut(s) 177, 344, 1044, 1862
HapII CCGG 4 cut(s) 17, 174, 214, 414
HgaI GACGC 2 cut(s) 215, 269
HhaI GCGC 2 cut(s) 490, 675
Hin1I GRCGYC 1 cut(s) 261
Hin6I GCGC 2 cut(s) 488, 673
HinP1I GCGC 2 cut(s) 488, 673
HindIII AAGCTT 3 cut(s) 917, 2037, 2457
HpaII CCGG 4 cut(s) 17, 174, 214, 414
HphI GGTGA 8 cut(s) 6, 119, 187, 223, 649, 1547, 1727, 2232
Hpy166II GTNNAC 3 cut(s) 274, 1538, 2580
Hpy8I GTNNAC 3 cut(s) 274, 1538, 2580
Hpy99I CGWCG 5 cut(s) 209, 263, 359, 362, 1353
HpyAV CCTTC 8 cut(s) 76, 328, 593, 671, 1256, 1519, 1927, 2152
HpyCH4III ACNGT 4 cut(s) 12, 105, 1510, 2091
HpyCH4IV ACGT 6 cut(s) 752, 862, 1369, 1390, 1408, 1719
HpyF10VI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1805, 1901, 2045, 2147
HpySE526I ACGT 6 cut(s) 752, 862, 1369, 1390, 1408, 1719
Hsp92I GRCGYC 1 cut(s) 261
HspAI GCGC 2 cut(s) 488, 673
Ksp22I TGATCA 1 cut(s) 1659
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
LguI GCTCTTC 1 cut(s) 1253
LmnI GCTCC 8 cut(s) 51, 291, 630, 1031, 1303, 1450, 2390, 2489
LweI GCATC 4 cut(s) 1096, 1343, 1723, 2182
MaeI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
MaeII ACGT 6 cut(s) 752, 862, 1369, 1390, 1408, 1719
MaeIII GTNAC 9 cut(s) 12, 655, 763, 779, 925, 1394, 1715, 1720, 2270
MalI GATC 9 cut(s) 93, 111, 805, 1232, 1661, 1971, 2169, 2479, 2514
MbiI CCGCTC 1 cut(s) 688
MboI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
MboII GAAGA 9 cut(s) 214, 326, 589, 684, 712, 1270, 2038, 2565, 2675
MfeI CAATTG 2 cut(s) 481, 1314
MflI RGATCY 1 cut(s) 2167
MhlI GDGCHC 6 cut(s) 48, 462, 1021, 1265, 1455, 2337
MlyI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1391
MmeI TCCRAC 3 cut(s) 264, 735, 2145
MroXI GAANNNNTTC 1 cut(s) 2667
MseI TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
MslI CAYNNNNRTG 2 cut(s) 578, 2222
MspA1I CMGCKG 7 cut(s) 36, 60, 896, 905, 1551, 1649, 2609
MspI CCGG 4 cut(s) 17, 174, 214, 414
MspR9I CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
MunI CAATTG 2 cut(s) 481, 1314
Mva1269I GAATGC 2 cut(s) 675, 1176
MvaI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
MvnI CGCG 4 cut(s) 36, 294, 490, 1267
MwoI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1805, 1901, 2045, 2147
NdeI CATATG 3 cut(s) 308, 619, 2013
NdeII GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
NlaIV GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 4 cut(s) 12, 655, 1394, 1715
NspI RCATGY 3 cut(s) 719, 1282, 2410
OliI CACNNNNGTG 1 cut(s) 2222
PagI TCATGA 1 cut(s) 573
PceI AGGCCT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 675, 1176
PdmI GAANNNNTTC 1 cut(s) 2667
PflFI GACNNNGTC 2 cut(s) 269, 1392
PflMI CCANNNNNTGG 1 cut(s) 1701
PfoI TCCNGGA 1 cut(s) 1459
PleI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1390
PmaCI CACGTG 1 cut(s) 863
PmlI CACGTG 1 cut(s) 863
PpsI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1390
Ppu21I YACGTR 2 cut(s) 863, 1370
PshAI GACNNNNGTC 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
PspCI CACGTG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 655
PspGI CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
PspN4I GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
PspPI GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
PstI CTGCAG 1 cut(s) 878
PstNI CAGNNNCTG 3 cut(s) 908, 1649, 2306
PsuI RGATCY 1 cut(s) 2167
PsyI GACNNNGTC 2 cut(s) 269, 1392
PvuII CAGCTG 3 cut(s) 896, 1649, 2609
RsaI GTAC 4 cut(s) 363, 949, 984, 1192
RsaNI GTAC 4 cut(s) 362, 948, 983, 1191
RseI CAYNNNNRTG 2 cut(s) 578, 2222
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 1253
SaqAI TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
Sau3AI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
Sau96I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
SbfI CCTGCAGG 1 cut(s) 878
SchI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1391
ScrFI CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
SdaI CCTGCAGG 1 cut(s) 878
SduI GDGCHC 6 cut(s) 48, 462, 1021, 1265, 1455, 2337
SfaNI GCATC 4 cut(s) 1096, 1343, 1723, 2182
SfcI CTRYAG 5 cut(s) 346, 874, 1506, 1621, 2101
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 4 cut(s) 19, 337, 416, 2289
SmiMI CAYNNNNRTG 2 cut(s) 578, 2222
SnaBI TACGTA 1 cut(s) 1370
Sse8387I CCTGCAGG 1 cut(s) 878
SseBI AGGCCT 1 cut(s) 344
SspI AATATT 3 cut(s) 541, 1581, 1999
SspMI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
StyI CCWWGG 3 cut(s) 434, 1897, 2541
TaaI ACNGT 4 cut(s) 12, 105, 1510, 2091
TaiI ACGT 6 cut(s) 755, 865, 1372, 1393, 1411, 1722
TaqI TCGA 7 cut(s) 168, 186, 681, 806, 963, 1308, 1385
TaqII GACCGA 1 cut(s) 282
TauI GCSGC 3 cut(s) 39, 294, 908
Tru1I TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
Tru9I TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
TscAI CASTG 6 cut(s) 456, 825, 1233, 1810, 2067, 2290
TseFI GTSAC 4 cut(s) 12, 655, 1394, 1715
Tsp45I GTSAC 4 cut(s) 12, 655, 1394, 1715
TspGWI ACGGA 3 cut(s) 38, 432, 935
TspRI CASTG 6 cut(s) 456, 825, 1233, 1810, 2067, 2290
Tth111I GACNNNGTC 2 cut(s) 269, 1392
Van91I CCANNNNNTGG 1 cut(s) 1701
VpaK11BI GGWCC 4 cut(s) 19, 337, 416, 2289
XapI RAATTY 1 cut(s) 1867
XbaI TCTAGA 2 cut(s) 2116, 2143
XceI RCATGY 3 cut(s) 719, 1282, 2410
XmaJI CCTAGG 1 cut(s) 1897
XmiI GTMKAC 2 cut(s) 273, 2579
XmnI GAANNNNTTC 1 cut(s) 2667
XspI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.