RLG00000030458

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000877
Physical Location & Seq
Forward (+)
61781315 .. 61786276
4962 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030458

Sequence Viewer

Length: 1116 bp
ATGCAGAGGCGCCATGGTGTCACGACCTTTGGAGGGGCTGCTAAGGTGTTCGTTGCCACTGGTGTGATAAGTGGGACAATTGGGCGCGGAATCAGCTTATGGCTGCTGCCTCTGACTTGCTTGGAAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGCCGGCATTCACGTTGGTGGTACTGCTACTGACCCTCTGAGTGGAATCCATCAGGCAGTGATCCTGGCTAAATGCCCTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGATGCGTGTGAGCAGAAGAGTTCACTACAGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGAACCCAGGTTATGGTGTTCATTGGGTGACATTACTAATGATGATGCCTGCTTTAAAAAAGCCTTAGAAGTTTCAAACGATAAGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGACGGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATGGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTACGCAGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTCGAGTTTCTTGGAAAAGTTCTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

372

Amino Acids

41.04

Weight (kDa)

5.98

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 208 - 241 3.1e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 444
AccII CGCG 2 cut(s) 87, 262
AciI CCGC 2 cut(s) 87, 532
AclWI GGATC 3 cut(s) 220, 707, 918
AcsI RAATTY 2 cut(s) 321, 610
AcuI CTGAAG 1 cut(s) 827
AcyI GRCGYC 1 cut(s) 10
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 7 cut(s) 33, 206, 444, 722, 835, 1031, 1032
AgsI TTSAA 4 cut(s) 398, 507, 610, 814
AjnI CCWGG 2 cut(s) 228, 437
AleI CACNNNNGTG 2 cut(s) 62, 180
AluBI AGCT 7 cut(s) 96, 392, 709, 782, 825, 893, 1076
AluI AGCT 7 cut(s) 96, 392, 709, 782, 825, 893, 1076
Alw21I GWGCWC 2 cut(s) 260, 1083
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 3 cut(s) 220, 707, 918
AlwNI CAGNNNCTG 2 cut(s) 392, 1052
Ama87I CYCGRG 3 cut(s) 522, 696, 1068
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 7 cut(s) 38, 103, 106, 386, 389, 647, 650
ApoI RAATTY 2 cut(s) 321, 610
ArsI GACNNNNNNTTYG 2 cut(s) 500, 532
AspA2I CCTAGG 1 cut(s) 640
AspLEI GCGC 2 cut(s) 12, 87
AspS9I GGNCC 1 cut(s) 1035
AsuHPI GGTGA 2 cut(s) 470, 975
AvaI CYCGRG 3 cut(s) 522, 696, 1068
AvaII GGWCC 1 cut(s) 1035
AvrII CCTAGG 1 cut(s) 640
BanI GGYRCC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 260, 1083
BbvI GCAGC 7 cut(s) 25, 90, 93, 398, 401, 634, 637
BccI CCATC 4 cut(s) 222, 620, 680, 1004
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 2 cut(s) 230, 439
BciVI GTATCC 1 cut(s) 630
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 540
BfaI CTAG 3 cut(s) 641, 683, 887
BfmI CTRYAG 3 cut(s) 304, 364, 844
BfoI RGCGCY 1 cut(s) 13
BfuI GTATCC 1 cut(s) 630
BglI GCCNNNNNGGC 1 cut(s) 644
BisI GCNGC 7 cut(s) 39, 104, 107, 387, 390, 648, 651
BlnI CCTAGG 1 cut(s) 640
BlpI GCTNAGC 2 cut(s) 528, 1077
BlsI GCNGC 7 cut(s) 40, 105, 108, 388, 391, 649, 652
Bme1390I CCNGG 2 cut(s) 230, 439
Bme18I GGWCC 1 cut(s) 1035
BmeT110I CYCGRG 3 cut(s) 522, 696, 1068
BmgT120I GGNCC 1 cut(s) 1035
BmiI GGNNCC 2 cut(s) 11, 1036
BmrFI CCNGG 2 cut(s) 230, 439
BmsI GCATC 3 cut(s) 270, 466, 925
BpmI CTGGAG 1 cut(s) 174
Bpu10I CCTNAGC 2 cut(s) 42, 879
Bpu1102I GCTNAGC 2 cut(s) 528, 1077
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 540
BsaJI CCNNGG 3 cut(s) 13, 437, 640
Bsc4I CCNNNNNNNGG 7 cut(s) 33, 206, 444, 722, 835, 1031, 1032
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 3 cut(s) 606, 877, 1005
BseBI CCWGG 2 cut(s) 230, 439
BseDI CCNNGG 3 cut(s) 13, 437, 640
BseLI CCNNNNNNNGG 7 cut(s) 33, 206, 444, 722, 835, 1031, 1032
BseMI GCAATG 3 cut(s) 606, 877, 1005
BseMII CTCAG 4 cut(s) 194, 893, 930, 1068
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 7 cut(s) 25, 90, 93, 398, 401, 634, 637
Bsh1236I CGCG 2 cut(s) 87, 262
BshFI GGCC 1 cut(s) 605
BshNI GGYRCC 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 260, 1083
BsiHKCI CYCGRG 3 cut(s) 522, 696, 1068
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 88, 1048
BslI CCNNNNNNNGG 7 cut(s) 33, 206, 444, 722, 835, 1031, 1032
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 2 cut(s) 88, 1048
BsmI GAATGC 1 cut(s) 171
BsnI GGCC 1 cut(s) 605
Bso31I GGTCTC 1 cut(s) 540
BsoBI CYCGRG 3 cut(s) 522, 696, 1068
Bsp1286I GDGCHC 2 cut(s) 260, 1083
Bsp143I GATC 4 cut(s) 225, 402, 712, 910
Bsp1720I GCTNAGC 2 cut(s) 528, 1077
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 2 cut(s) 87, 532
BspANI GGCC 1 cut(s) 605
BspCNI CTCAG 4 cut(s) 195, 892, 931, 1069
BspFNI CGCG 2 cut(s) 87, 262
BspLI GGNNCC 2 cut(s) 11, 1036
BspPI GGATC 3 cut(s) 220, 707, 918
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 540
BsrDI GCAATG 3 cut(s) 606, 877, 1005
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 13, 437, 640
BssMI GATC 4 cut(s) 225, 402, 712, 910
BssNI GRCGYC 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 13, 640
Bst2UI CCWGG 2 cut(s) 230, 439
Bst4CI ACNGT 1 cut(s) 834
Bst6I CTCTTC 3 cut(s) 248, 289, 764
BstACI GRCGYC 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 4 cut(s) 169, 260, 481, 544
BstDEI CTNAG 8 cut(s) 42, 203, 496, 528, 879, 939, 1077, 1084
BstDSI CCRYGG 1 cut(s) 13
BstFNI CGCG 2 cut(s) 87, 262
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 2 cut(s) 12, 87
BstKTI GATC 4 cut(s) 228, 405, 715, 913
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 4 cut(s) 225, 402, 712, 910
BstMWI GCNNNNNNNGC 5 cut(s) 93, 548, 644, 788, 890
BstNI CCWGG 2 cut(s) 230, 439
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 228, 437
BstSFI CTRYAG 3 cut(s) 304, 364, 844
BstUI CGCG 2 cut(s) 87, 262
BstV1I GCAGC 7 cut(s) 25, 90, 93, 398, 401, 634, 637
BstX2I RGATCY 1 cut(s) 910
BstYI RGATCY 1 cut(s) 910
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 13
BtsI GCAGTG 2 cut(s) 228, 553
BtsIMutI CAGTG 5 cut(s) 57, 228, 553, 803, 1036
Cac8I GCNNGC 4 cut(s) 169, 260, 481, 544
CaiI CAGNNNCTG 2 cut(s) 392, 1052
CfoI GCGC 2 cut(s) 12, 87
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 1035
Csp6I GTAC 1 cut(s) 186
CviAII CATG 6 cut(s) 14, 266, 274, 732, 851, 976
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 8 cut(s) 42, 203, 496, 528, 879, 939, 1077, 1084
DinI GGCGCC 1 cut(s) 11
DpnI GATC 4 cut(s) 227, 404, 714, 912
DpnII GATC 4 cut(s) 225, 402, 712, 910
DraI TTTAAA 1 cut(s) 487
DraIII CACNNNGTG 1 cut(s) 548
Eam1104I CTCTTC 3 cut(s) 248, 289, 764
EarI CTCTTC 3 cut(s) 248, 289, 764
Eco130I CCWWGG 2 cut(s) 13, 640
Eco31I GGTCTC 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 1035
Eco57I CTGAAG 1 cut(s) 827
Eco88I CYCGRG 3 cut(s) 522, 696, 1068
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 2 cut(s) 228, 437
EcoT14I CCWWGG 2 cut(s) 13, 640
EgeI GGCGCC 1 cut(s) 11
EheI GGCGCC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 13, 640
FaeI CATG 6 cut(s) 17, 269, 277, 735, 854, 979
FalI AAGNNNNNCTT 2 cut(s) 964, 996
FaqI GGGAC 2 cut(s) 88, 1048
FatI CATG 6 cut(s) 13, 265, 273, 731, 850, 975
FauNDI CATATG 1 cut(s) 756
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 7 cut(s) 39, 104, 107, 387, 390, 648, 651
Fsp4HI GCNGC 7 cut(s) 39, 104, 107, 387, 390, 648, 651
FspBI CTAG 3 cut(s) 641, 683, 887
GlaI GCGC 2 cut(s) 11, 86
GluI GCNGC 7 cut(s) 39, 104, 107, 387, 390, 648, 651
GsuI CTGGAG 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 1 cut(s) 605
HapII CCGG 1 cut(s) 168
HhaI GCGC 2 cut(s) 12, 87
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 6 cut(s) 17, 269, 277, 735, 854, 979
Hin6I GCGC 2 cut(s) 10, 85
HinP1I GCGC 2 cut(s) 10, 85
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 4 cut(s) 90, 149, 210, 1049
HpaII CCGG 1 cut(s) 168
HphI GGTGA 2 cut(s) 470, 975
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 5 cut(s) 114, 204, 354, 421, 1054
Hpy188III TCNNGA 7 cut(s) 22, 153, 406, 623, 716, 887, 1070
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 2 cut(s) 670, 895
HpyCH4III ACNGT 1 cut(s) 834
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 8 cut(s) 4, 277, 542, 551, 599, 653, 754, 1046
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 548, 644, 788, 890
HpyF3I CTNAG 8 cut(s) 42, 203, 496, 528, 879, 939, 1077, 1084
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 6 cut(s) 17, 269, 277, 735, 854, 979
HspAI GCGC 2 cut(s) 10, 85
KasI GGCGCC 1 cut(s) 9
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 4 cut(s) 225, 402, 712, 910
LguI GCTCTTC 1 cut(s) 248
Lsp1109I GCAGC 7 cut(s) 25, 90, 93, 398, 401, 634, 637
LweI GCATC 3 cut(s) 270, 466, 925
MaeI CTAG 3 cut(s) 641, 683, 887
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 19, 458
MalI GATC 4 cut(s) 227, 404, 714, 912
MboI GATC 4 cut(s) 225, 402, 712, 910
MboII GAAGA 3 cut(s) 265, 306, 781
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 910
MhlI GDGCHC 2 cut(s) 260, 1083
MluCI AATT 8 cut(s) 78, 246, 321, 338, 610, 930, 954, 991
Mly113I GGCGCC 1 cut(s) 10
MmeI TCCRAC 2 cut(s) 888, 927
MnlI CCTC 8 cut(s) 26, 120, 210, 252, 304, 322, 721, 958
MroNI GCCGGC 1 cut(s) 167
MseI TTAA 2 cut(s) 486, 656
MslI CAYNNNNRTG 3 cut(s) 62, 180, 278
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 230, 439
MunI CAATTG 1 cut(s) 78
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 2 cut(s) 230, 439
MvnI CGCG 2 cut(s) 87, 262
MwoI GCNNNNNNNGC 5 cut(s) 93, 548, 644, 788, 890
NaeI GCCGGC 1 cut(s) 169
NarI GGCGCC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 13
NdeI CATATG 1 cut(s) 756
NdeII GATC 4 cut(s) 225, 402, 712, 910
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 6 cut(s) 17, 269, 277, 735, 854, 979
NlaIV GGNNCC 2 cut(s) 11, 1036
NmuCI GTSAC 2 cut(s) 19, 458
NspI RCATGY 1 cut(s) 277
OliI CACNNNNGTG 2 cut(s) 62, 180
PciSI GCTCTTC 1 cut(s) 248
PctI GAATGC 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 169
PfeI GAWTC 4 cut(s) 90, 149, 210, 1049
PflMI CCANNNNNTGG 1 cut(s) 444
PkrI GCNGC 7 cut(s) 40, 105, 108, 388, 391, 649, 652
PluTI GGCGCC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 228, 437
PspGI CCWGG 2 cut(s) 228, 437
PspN4I GGNNCC 2 cut(s) 11, 1036
PspPI GGNCC 1 cut(s) 1035
PstNI CAGNNNCTG 2 cut(s) 392, 1052
PsuI RGATCY 1 cut(s) 910
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 3 cut(s) 62, 180, 278
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 486, 656
SatI GCNGC 7 cut(s) 39, 104, 107, 387, 390, 648, 651
Sau3AI GATC 4 cut(s) 225, 402, 712, 910
Sau96I GGNCC 1 cut(s) 1035
ScrFI CCNGG 2 cut(s) 230, 439
SduI GDGCHC 2 cut(s) 260, 1083
SfaNI GCATC 3 cut(s) 270, 466, 925
SfcI CTRYAG 3 cut(s) 304, 364, 844
SfoI GGCGCC 1 cut(s) 11
SinI GGWCC 1 cut(s) 1035
SmiMI CAYNNNNRTG 3 cut(s) 62, 180, 278
Sse9I AATT 8 cut(s) 78, 246, 321, 338, 610, 930, 954, 991
SsiI CCGC 2 cut(s) 87, 532
SspDI GGCGCC 1 cut(s) 9
SspI AATATT 1 cut(s) 742
SspMI CTAG 3 cut(s) 641, 683, 887
StyD4I CCNGG 2 cut(s) 228, 437
StyI CCWWGG 2 cut(s) 13, 640
TaaI ACNGT 1 cut(s) 834
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 1089
TasI AATT 8 cut(s) 78, 246, 321, 338, 610, 930, 954, 991
TfiI GAWTC 4 cut(s) 90, 149, 210, 1049
Tru1I TTAA 2 cut(s) 486, 656
Tru9I TTAA 2 cut(s) 486, 656
TscAI CASTG 5 cut(s) 64, 228, 553, 810, 1036
TseFI GTSAC 2 cut(s) 19, 458
TseI GCWGC 7 cut(s) 38, 103, 106, 386, 389, 647, 650
Tsp45I GTSAC 2 cut(s) 19, 458
TspDTI ATGAA 2 cut(s) 441, 447
TspRI CASTG 5 cut(s) 64, 228, 553, 810, 1036
Van91I CCANNNNNTGG 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 1035
XapI RAATTY 2 cut(s) 321, 610
XbaI TCTAGA 1 cut(s) 886
XceI RCATGY 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 640
XspI CTAG 3 cut(s) 641, 683, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.