Rroxscaffold_2G00104290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000877
Physical Location & Seq
Reverse (-)
27357478 .. 27363258
5781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00104290.1

Sequence Viewer

Length: 165 bp
ATGATGAGACTCTTGATCCATGAAAGGAGAAGGATGCGGTTGGTGTGCGTTGATGCTGCAAGGGCAGCGGACATGCAGCGGTGCTGCAGGGGCAGTAGGGATGCATGCGCAGGGGCGCGTAGGTTCTGCAGGGGCAGGCACACAAGTGAGGCTAGCGTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.18

Weight (kDa)

11.27

Isoelectric Point (pI)

46.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 109
AccII CGCG 1 cut(s) 118
AciI CCGC 3 cut(s) 37, 68, 79
AclWI GGATC 1 cut(s) 10
AleI CACNNNNGTG 1 cut(s) 144
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
AlwI GGATC 1 cut(s) 10
ApeKI GCWGC 4 cut(s) 56, 65, 76, 84
AspLEI GCGC 2 cut(s) 110, 118
AsuNHI GCTAGC 1 cut(s) 152
BbvI GCAGC 4 cut(s) 43, 71, 77, 88
BfaI CTAG 2 cut(s) 153, 163
BfmI CTRYAG 2 cut(s) 85, 127
BisI GCNGC 4 cut(s) 57, 66, 77, 85
BlsI GCNGC 4 cut(s) 58, 67, 78, 86
BmsI GCATC 3 cut(s) 24, 43, 91
BmtI GCTAGC 1 cut(s) 156
BseGI GGATG 2 cut(s) 39, 106
BseXI GCAGC 4 cut(s) 43, 71, 77, 88
Bsh1236I CGCG 1 cut(s) 118
Bsp143I GATC 1 cut(s) 15
BspACI CCGC 3 cut(s) 37, 68, 79
BspFNI CGCG 1 cut(s) 118
BspMAI CTGCAG 2 cut(s) 89, 131
BspOI GCTAGC 1 cut(s) 156
BspPI GGATC 1 cut(s) 10
BssMI GATC 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 106, 137, 154
BstF5I GGATG 2 cut(s) 39, 106
BstFNI CGCG 1 cut(s) 118
BstHHI GCGC 2 cut(s) 110, 118
BstKTI GATC 1 cut(s) 18
BstMBI GATC 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 62, 65, 90
BstNSI RCATGY 2 cut(s) 76, 108
BstSFI CTRYAG 2 cut(s) 85, 127
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 4 cut(s) 43, 71, 77, 88
BtsCI GGATG 2 cut(s) 39, 106
Cac8I GCNNGC 3 cut(s) 106, 137, 154
CfoI GCGC 2 cut(s) 110, 118
CviAII CATG 3 cut(s) 20, 73, 105
CviJI RGCY 2 cut(s) 152, 162
CviKI_1 RGCY 2 cut(s) 152, 162
DpnI GATC 1 cut(s) 17
DpnII GATC 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 106
FaeI CATG 3 cut(s) 23, 76, 108
FaiI YATR 3 cut(s) 21, 74, 106
FatI CATG 3 cut(s) 19, 72, 104
Fnu4HI GCNGC 4 cut(s) 57, 66, 77, 85
FokI GGATG 2 cut(s) 46, 113
Fsp4HI GCNGC 4 cut(s) 57, 66, 77, 85
FspBI CTAG 2 cut(s) 153, 163
FspI TGCGCA 1 cut(s) 109
GlaI GCGC 2 cut(s) 109, 117
GluI GCNGC 4 cut(s) 57, 66, 77, 85
HhaI GCGC 2 cut(s) 110, 118
Hin1II CATG 3 cut(s) 23, 76, 108
Hin6I GCGC 2 cut(s) 108, 116
HinP1I GCGC 2 cut(s) 108, 116
HinfI GANTC 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 5 cut(s) 59, 76, 87, 104, 129
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 65, 90
Hsp92II CATG 3 cut(s) 23, 76, 108
HspAI GCGC 2 cut(s) 108, 116
Kzo9I GATC 1 cut(s) 15
LpnPI CCDG 4 cut(s) 73, 96, 115, 121
Lsp1109I GCAGC 4 cut(s) 43, 71, 77, 88
LweI GCATC 3 cut(s) 24, 43, 91
MaeI CTAG 2 cut(s) 153, 163
MalI GATC 1 cut(s) 17
MboI GATC 1 cut(s) 15
MlyI GAGTC 1 cut(s) 3
MnlI CCTC 1 cut(s) 142
Mph1103I ATGCAT 1 cut(s) 106
MslI CAYNNNNRTG 1 cut(s) 144
MspA1I CMGCKG 2 cut(s) 68, 79
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 62, 65, 90
NdeII GATC 1 cut(s) 15
NheI GCTAGC 1 cut(s) 152
NlaIII CATG 3 cut(s) 23, 76, 108
NsbI TGCGCA 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 2 cut(s) 76, 108
OliI CACNNNNGTG 1 cut(s) 144
PaeI GCATGC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 58, 67, 78, 86
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
PstI CTGCAG 2 cut(s) 89, 131
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 4 cut(s) 57, 66, 77, 85
Sau3AI GATC 1 cut(s) 15
SchI GAGTC 1 cut(s) 3
SetI ASST 2 cut(s) 125, 164
SfaNI GCATC 3 cut(s) 24, 43, 91
SfcI CTRYAG 2 cut(s) 85, 127
SmiMI CAYNNNNRTG 1 cut(s) 144
SphI GCATGC 1 cut(s) 108
SsiI CCGC 3 cut(s) 37, 68, 79
SspMI CTAG 2 cut(s) 153, 163
TseI GCWGC 4 cut(s) 56, 65, 76, 84
TspDTI ATGAA 1 cut(s) 36
XceI RCATGY 2 cut(s) 76, 108
XspI CTAG 2 cut(s) 153, 163
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.