Rmu_sc0004660.1_g000005

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004660.1
OG0000877
Physical Location & Seq
Reverse (-)
11356 .. 15381
4026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004660.1_g000005.1.cds

Sequence Viewer

Length: 1185 bp
atgtctgaaccgtcaccggacctcgctatcctccgcggctacgagctccgtctcctccgctgcaccttcctctctcctcctccgccgtccgatcctgaacaaccgtccgatcaaacctcgcccactcaccccctctcccccctaatctccgccctcctcacttccatcgagtccggccgatacctcgaagccctcacctccgccgacgcaaaccggcttgtcttcaaactcaccgattccgactcgctcggcgaccacgacgccgaccgagtctactccgagttgctccgccgcgtggagttgttcatatgcgaagaagctgaggataatgggaaggaccaggcctatagagtcgtcgtcgtactctgcattgccgtagctgccttacttgctttcactcagtctaacctaaccggacctttggaggggctgccaaggtgtccgttgccagtggaagtgcccttatgtgatgagtgggacagttgggcgcggaatcagcttatggctgctggctctgacttgcttggaaaggtctataatattcagtatataatttatgcaaagatattggtcatgaagatgaaagatttgttatttgaaggaagtttgtcctgtgcatatggaattaggagcctttcatggtggctcactagggtcacccttctccatcagcgcattctcgatgagcggtcttcatctttgtttgaccttttgcatgtcttcacaagtgaaactttgaaccattttggcacgttggagaaagtaacaagttattggggtaacgatttgcgtaatggcgagggatcgacacttgtctcagtgattcatctggaagctggaatgatggaatacatctatgcacgtgttgattcctgcagattggtagagaatgagagcgattctggagttatatcagacggcattcaagttggtggtactgctgctgaccctttgagtgcaatccatcaggcagtgatcctagctaaatgccttcaaattgagaagagcacgcgacatgatgacatgcagagatgggaaatggctccatacatcgaggcaattgattctcagctatcatcatattttattatacgacgatgctgtgatgtcctacgtattcggtgggagtcgacacgtagtcacacaaaggagcgtgcattgatgatgatggaaacatcggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

394

Amino Acids

44.23

Weight (kDa)

4.94

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 688
AccI GTMKAC 2 cut(s) 273, 1130
AccII CGCG 4 cut(s) 36, 294, 490, 1012
AclWI GGATC 3 cut(s) 86, 811, 970
AcoI YGGCCR 1 cut(s) 175
AcvI CACGTG 1 cut(s) 863
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 363, 937
AfiI CCNNNNNNNGG 2 cut(s) 295, 425
AflIII ACRYGT 2 cut(s) 862, 1133
AgsI TTSAA 5 cut(s) 226, 599, 739, 926, 995
AhdI GACNNNNNGTC 1 cut(s) 1137
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 7 cut(s) 46, 320, 380, 499, 836, 983, 1072
AluI AGCT 7 cut(s) 46, 320, 380, 499, 836, 983, 1072
Alw21I GWGCWC 2 cut(s) 48, 1010
Alw26I GTCTC 2 cut(s) 56, 820
AlwI GGATC 3 cut(s) 86, 811, 970
AoxI GGCC 2 cut(s) 175, 342
ApeKI GCWGC 5 cut(s) 60, 380, 430, 506, 941
AspLEI GCGC 2 cut(s) 490, 675
AspS9I GGNCC 3 cut(s) 19, 337, 416
AsuHPI GGTGA 5 cut(s) 6, 119, 187, 223, 649
AvaII GGWCC 3 cut(s) 19, 337, 416
BaeGI GKGCMC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 863
BbsI GAAGAC 3 cut(s) 214, 684, 712
Bbv12I GWGCWC 2 cut(s) 48, 1010
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 5 cut(s) 47, 367, 417, 493, 928
BccI CCATC 6 cut(s) 173, 675, 838, 972, 1026, 1162
BceAI ACGGC 3 cut(s) 70, 359, 934
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 56, 820
BfaI CTAG 2 cut(s) 651, 980
BfmI CTRYAG 2 cut(s) 346, 874
BisI GCNGC 7 cut(s) 37, 61, 292, 381, 431, 507, 942
BlsI GCNGC 7 cut(s) 38, 62, 293, 382, 432, 508, 943
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 3 cut(s) 19, 337, 416
BmeRI GACNNNNNGTC 1 cut(s) 1137
BmgT120I GGNCC 3 cut(s) 19, 337, 416
BmiI GGNNCC 2 cut(s) 632, 1044
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 1 cut(s) 1088
BoxI GACNNNNGTC 1 cut(s) 812
BpiI GAAGAC 3 cut(s) 214, 684, 712
BpmI CTGGAG 1 cut(s) 924
Bpu10I CCTNAGC 1 cut(s) 321
BsaAI YACGTR 3 cut(s) 863, 1115, 1136
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 34, 434
BsaWI WCCGGW 2 cut(s) 16, 413
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 425
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 34, 434
BseLI CCNNNNNNNGG 2 cut(s) 295, 425
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 4 cut(s) 312, 413, 831, 1082
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 4 cut(s) 44, 66, 69, 146
BseSI GKGCMC 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 5 cut(s) 47, 367, 417, 493, 928
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 4 cut(s) 36, 294, 490, 1012
Bsh1285I CGRYCG 2 cut(s) 178, 268
BshFI GGCC 2 cut(s) 177, 344
BsiEI CGRYCG 2 cut(s) 178, 268
BsiHKAI GWGCWC 2 cut(s) 48, 1010
BsiSI CCGG 4 cut(s) 17, 174, 214, 414
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 2 cut(s) 295, 425
BsmAI GTCTC 2 cut(s) 56, 820
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 491
BsmI GAATGC 2 cut(s) 675, 921
BsnI GGCC 2 cut(s) 177, 344
Bsp1286I GDGCHC 3 cut(s) 48, 462, 1010
Bsp143I GATC 4 cut(s) 91, 109, 803, 975
BspANI GGCC 2 cut(s) 177, 344
BspCNI CTCAG 4 cut(s) 313, 412, 830, 1081
BspFNI CGCG 4 cut(s) 36, 294, 490, 1012
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 2 cut(s) 632, 1044
BspMAI CTGCAG 1 cut(s) 878
BspPI GGATC 3 cut(s) 86, 811, 970
BspQI GCTCTTC 1 cut(s) 998
BsrBI CCGCTC 1 cut(s) 688
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 34, 434
BssMI GATC 4 cut(s) 91, 109, 803, 975
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 434
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 12, 105, 482
Bst6I CTCTTC 1 cut(s) 998
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 3 cut(s) 863, 1115, 1136
BstC8I GCNNGC 3 cut(s) 511, 1010, 1155
BstDEI CTNAG 4 cut(s) 321, 399, 817, 1068
BstDSI CCRYGG 1 cut(s) 34
BstEII GGTNACC 1 cut(s) 655
BstFNI CGCG 4 cut(s) 36, 294, 490, 1012
BstHHI GCGC 2 cut(s) 490, 675
BstKTI GATC 4 cut(s) 94, 112, 806, 978
BstMAI GTCTC 2 cut(s) 56, 820
BstMBI GATC 4 cut(s) 91, 109, 803, 975
BstMCI CGRYCG 2 cut(s) 178, 268
BstMWI GCNNNNNNNGC 3 cut(s) 380, 389, 496
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 2 cut(s) 719, 1027
BstPAI GACNNNNGTC 1 cut(s) 812
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 2 cut(s) 346, 874
BstSLI GKGCMC 1 cut(s) 462
BstSNI TACGTA 1 cut(s) 1115
BstUI CGCG 4 cut(s) 36, 294, 490, 1012
BstV1I GCAGC 5 cut(s) 47, 367, 417, 493, 928
BstV2I GAAGAC 3 cut(s) 214, 684, 712
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 2 cut(s) 177, 344
BtgI CCRYGG 1 cut(s) 34
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 3 cut(s) 456, 825, 978
Cac8I GCNNGC 3 cut(s) 511, 1010, 1155
CciI TCATGA 1 cut(s) 573
CfoI GCGC 2 cut(s) 490, 675
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 3 cut(s) 19, 337, 416
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 2 cut(s) 215, 269
Csp6I GTAC 2 cut(s) 362, 936
CviAII CATG 5 cut(s) 574, 639, 716, 1016, 1024
CviQI GTAC 2 cut(s) 362, 936
DdeI CTNAG 4 cut(s) 321, 399, 817, 1068
DpnI GATC 4 cut(s) 93, 111, 805, 977
DpnII GATC 4 cut(s) 91, 109, 803, 975
DriI GACNNNNNGTC 1 cut(s) 1137
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 998
Eam1105I GACNNNNNGTC 1 cut(s) 1137
EarI CTCTTC 1 cut(s) 998
EciI GGCGGA 4 cut(s) 72, 139, 190, 278
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 175
Eco105I TACGTA 1 cut(s) 1115
Eco130I CCWWGG 1 cut(s) 434
Eco147I AGGCCT 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 3 cut(s) 19, 337, 416
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 863
Eco91I GGTNACC 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 434
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 5 cut(s) 577, 642, 719, 1019, 1027
FalI AAGNNNNNCTT 2 cut(s) 718, 750
FaqI GGGAC 1 cut(s) 491
FatI CATG 5 cut(s) 573, 638, 715, 1015, 1023
FauNDI CATATG 2 cut(s) 308, 619
FblI GTMKAC 2 cut(s) 273, 1130
Fnu4HI GCNGC 7 cut(s) 37, 61, 292, 381, 431, 507, 942
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 7 cut(s) 37, 61, 292, 381, 431, 507, 942
FspBI CTAG 2 cut(s) 651, 980
GlaI GCGC 2 cut(s) 489, 674
GluI GCNGC 7 cut(s) 37, 61, 292, 381, 431, 507, 942
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 2 cut(s) 177, 344
HapII CCGG 4 cut(s) 17, 174, 214, 414
HgaI GACGC 2 cut(s) 215, 269
HhaI GCGC 2 cut(s) 490, 675
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 5 cut(s) 577, 642, 719, 1019, 1027
Hin6I GCGC 2 cut(s) 488, 673
HinP1I GCGC 2 cut(s) 488, 673
HincII GTYRAC 1 cut(s) 1131
HindII GTYRAC 1 cut(s) 1131
HpaII CCGG 4 cut(s) 17, 174, 214, 414
HphI GGTGA 5 cut(s) 6, 119, 187, 223, 649
Hpy166II GTNNAC 2 cut(s) 274, 1131
Hpy188I TCNGA 7 cut(s) 7, 91, 109, 241, 280, 517, 916
Hpy188III TCNNGA 5 cut(s) 95, 574, 680, 830, 903
Hpy8I GTNNAC 2 cut(s) 274, 1131
Hpy99I CGWCG 5 cut(s) 209, 263, 359, 362, 1098
HpyAV CCTTC 5 cut(s) 76, 328, 593, 671, 1001
HpyCH4III ACNGT 3 cut(s) 12, 105, 482
HpyCH4IV ACGT 4 cut(s) 752, 862, 1114, 1135
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 389, 496
HpyF3I CTNAG 4 cut(s) 321, 399, 817, 1068
HpySE526I ACGT 4 cut(s) 752, 862, 1114, 1135
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 5 cut(s) 577, 642, 719, 1019, 1027
HspAI GCGC 2 cut(s) 488, 673
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 4 cut(s) 91, 109, 803, 975
LguI GCTCTTC 1 cut(s) 998
LmnI GCTCC 5 cut(s) 51, 291, 630, 1048, 1150
Lsp1109I GCAGC 5 cut(s) 47, 367, 417, 493, 928
LweI GCATC 1 cut(s) 1088
MaeI CTAG 2 cut(s) 651, 980
MaeII ACGT 4 cut(s) 752, 862, 1114, 1135
MaeIII GTNAC 5 cut(s) 12, 655, 763, 779, 1139
MalI GATC 4 cut(s) 93, 111, 805, 977
MbiI CCGCTC 1 cut(s) 688
MboI GATC 4 cut(s) 91, 109, 803, 975
MboII GAAGA 6 cut(s) 214, 326, 589, 684, 712, 1015
MfeI CAATTG 1 cut(s) 1059
MhlI GDGCHC 3 cut(s) 48, 462, 1010
MluCI AATT 4 cut(s) 552, 624, 996, 1059
MlyI GAGTC 5 cut(s) 179, 236, 279, 360, 1136
MmeI TCCRAC 2 cut(s) 264, 735
MslI CAYNNNNRTG 2 cut(s) 578, 1180
MspA1I CMGCKG 2 cut(s) 36, 60
MspI CCGG 4 cut(s) 17, 174, 214, 414
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 2 cut(s) 675, 921
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 4 cut(s) 36, 294, 490, 1012
MwoI GCNNNNNNNGC 3 cut(s) 380, 389, 496
NdeI CATATG 2 cut(s) 308, 619
NdeII GATC 4 cut(s) 91, 109, 803, 975
NlaIII CATG 5 cut(s) 577, 642, 719, 1019, 1027
NlaIV GGNNCC 2 cut(s) 632, 1044
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 3 cut(s) 12, 655, 1139
NspI RCATGY 2 cut(s) 719, 1027
PagI TCATGA 1 cut(s) 573
PceI AGGCCT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 998
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 675, 921
PfeI GAWTC 6 cut(s) 236, 493, 823, 869, 899, 1064
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 7 cut(s) 38, 62, 293, 382, 432, 508, 943
PleI GAGTC 5 cut(s) 178, 236, 278, 359, 1135
PmaCI CACGTG 1 cut(s) 863
PmlI CACGTG 1 cut(s) 863
PpsI GAGTC 5 cut(s) 178, 236, 278, 359, 1135
Ppu21I YACGTR 3 cut(s) 863, 1115, 1136
PshAI GACNNNNGTC 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 339
PspCI CACGTG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 655
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 632, 1044
PspPI GGNCC 3 cut(s) 19, 337, 416
PstI CTGCAG 1 cut(s) 878
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 2 cut(s) 363, 937
RsaNI GTAC 2 cut(s) 362, 936
RseI CAYNNNNRTG 2 cut(s) 578, 1180
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 37
SalI GTCGAC 1 cut(s) 1129
SapI GCTCTTC 1 cut(s) 998
SatI GCNGC 7 cut(s) 37, 61, 292, 381, 431, 507, 942
Sau3AI GATC 4 cut(s) 91, 109, 803, 975
Sau96I GGNCC 3 cut(s) 19, 337, 416
SchI GAGTC 5 cut(s) 179, 236, 279, 360, 1136
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 3 cut(s) 48, 462, 1010
SfaNI GCATC 1 cut(s) 1088
SfcI CTRYAG 2 cut(s) 346, 874
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 19, 337, 416
SmiMI CAYNNNNRTG 2 cut(s) 578, 1180
SnaBI TACGTA 1 cut(s) 1115
Sse9I AATT 4 cut(s) 552, 624, 996, 1059
SseBI AGGCCT 1 cut(s) 344
SspI AATATT 1 cut(s) 541
SspMI CTAG 2 cut(s) 651, 980
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 3 cut(s) 12, 105, 482
TaiI ACGT 4 cut(s) 755, 865, 1117, 1138
TaqI TCGA 6 cut(s) 168, 186, 681, 806, 1053, 1130
TaqII GACCGA 1 cut(s) 282
TasI AATT 4 cut(s) 552, 624, 996, 1059
TauI GCSGC 2 cut(s) 39, 294
TfiI GAWTC 6 cut(s) 236, 493, 823, 869, 899, 1064
TscAI CASTG 3 cut(s) 456, 825, 978
TseFI GTSAC 3 cut(s) 12, 655, 1139
TseI GCWGC 5 cut(s) 60, 380, 430, 506, 941
Tsp45I GTSAC 3 cut(s) 12, 655, 1139
TspDTI ATGAA 6 cut(s) 295, 590, 596, 627, 684, 815
TspGWI ACGGA 2 cut(s) 38, 432
TspRI CASTG 3 cut(s) 456, 825, 978
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 19, 337, 416
XceI RCATGY 2 cut(s) 719, 1027
XmiI GTMKAC 2 cut(s) 273, 1130
XspI CTAG 2 cut(s) 651, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.