Rh1DG048100

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Reverse (-)
7893871 .. 7895943
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG048100.1

Sequence Viewer

Length: 576 bp
ATGATGATGGAAACATTGGTTCAGGGTAACAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTTTGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATATGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTAAAAAAGCCCTAGAAGTTTCAAACGATAAGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAAGGGGGAATATAGAACATCTAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATGGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTCGATCCTGAAAATGTGGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

191

Amino Acids

21.21

Weight (kDa)

5.08

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 127 - 188 4.2e-06 Tetratricopeptide repeat
TPR_2 PF07719 155 - 188 1.2e-06 Tetratricopeptide repeat
TPR_1 PF00515 156 - 188 6.4e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 285
AciI CCGC 3 cut(s) 106, 133, 373
AclWI GGATC 1 cut(s) 548
AcsI RAATTY 2 cut(s) 162, 451
AdeI CACNNNGTG 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 44, 285
AgsI TTSAA 3 cut(s) 239, 348, 451
AjnI CCWGG 2 cut(s) 43, 278
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 2 cut(s) 233, 550
AluI AGCT 2 cut(s) 233, 550
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 548
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 2 cut(s) 363, 537
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 4 cut(s) 227, 230, 488, 491
ApoI RAATTY 2 cut(s) 162, 451
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AspA2I CCTAGG 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 131, 311
AvaI CYCGRG 2 cut(s) 363, 537
AvrII CCTAGG 1 cut(s) 481
BanII GRGCYC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 239, 242, 475, 478
BccI CCATC 3 cut(s) 461, 497, 521
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 2 cut(s) 45, 280
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 3 cut(s) 338, 482, 524
BfmI CTRYAG 2 cut(s) 90, 205
BfuI GTATCC 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 485
BisI GCNGC 4 cut(s) 228, 231, 489, 492
BlnI CCTAGG 1 cut(s) 481
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 4 cut(s) 229, 232, 490, 493
Bme1390I CCNGG 2 cut(s) 45, 280
BmeT110I CYCGRG 2 cut(s) 363, 537
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 45, 280
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 278, 481
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 285
Bse3DI GCAATG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 45, 280
BseDI CCNNGG 2 cut(s) 278, 481
BseGI GGATG 1 cut(s) 508
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 44, 285
BseMI GCAATG 1 cut(s) 447
BseXI GCAGC 4 cut(s) 239, 242, 475, 478
BshFI GGCC 1 cut(s) 446
BsiHKCI CYCGRG 2 cut(s) 363, 537
BslI CCNNNNNNNGG 2 cut(s) 44, 285
BsmAI GTCTC 1 cut(s) 381
BsnI GGCC 1 cut(s) 446
Bso31I GGTCTC 1 cut(s) 381
BsoBI CYCGRG 2 cut(s) 363, 537
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 243, 553
Bsp1720I GCTNAGC 1 cut(s) 369
BspACI CCGC 3 cut(s) 106, 133, 373
BspANI GGCC 1 cut(s) 446
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 278, 481
BssMI GATC 2 cut(s) 243, 553
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 45, 280
Bst4CI ACNGT 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 322, 385
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 508
BstKTI GATC 2 cut(s) 246, 556
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 2 cut(s) 243, 553
BstMWI GCNNNNNNNGC 2 cut(s) 389, 485
BstNI CCWGG 2 cut(s) 45, 280
BstSCI CCNGG 2 cut(s) 43, 278
BstSFI CTRYAG 2 cut(s) 90, 205
BstV1I GCAGC 4 cut(s) 239, 242, 475, 478
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 446
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 394
Cac8I GCNNGC 2 cut(s) 322, 385
CaiI CAGNNNCTG 1 cut(s) 233
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 245, 555
DpnII GATC 2 cut(s) 243, 553
DraI TTTAAA 1 cut(s) 328
DraIII CACNNNGTG 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 381
Eco88I CYCGRG 2 cut(s) 363, 537
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 43, 278
EcoT14I CCWWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 481
FaiI YATR 8 cut(s) 84, 117, 184, 207, 286, 394, 411, 574
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 228, 231, 489, 492
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 4 cut(s) 228, 231, 489, 492
FspBI CTAG 3 cut(s) 338, 482, 524
GluI GCNGC 4 cut(s) 228, 231, 489, 492
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 446
HinfI GANTC 1 cut(s) 61
HphI GGTGA 2 cut(s) 131, 311
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 144, 195, 262
Hpy188III TCNNGA 3 cut(s) 247, 464, 557
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 2 cut(s) 103, 511
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 4 cut(s) 383, 392, 440, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 485
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 303
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 2 cut(s) 243, 553
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 4 cut(s) 239, 242, 475, 478
LweI GCATC 1 cut(s) 307
MaeI CTAG 3 cut(s) 338, 482, 524
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 26, 299, 304
MalI GATC 2 cut(s) 245, 555
MboI GATC 2 cut(s) 243, 553
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 3 cut(s) 162, 179, 451
MnlI CCTC 4 cut(s) 49, 145, 163, 562
MseI TTAA 2 cut(s) 327, 497
MspA1I CMGCKG 2 cut(s) 135, 233
MspR9I CCNGG 2 cut(s) 45, 280
MvaI CCWGG 2 cut(s) 45, 280
MwoI GCNNNNNNNGC 2 cut(s) 389, 485
NdeII GATC 2 cut(s) 243, 553
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 43
PkrI GCNGC 4 cut(s) 229, 232, 490, 493
Psp6I CCWGG 2 cut(s) 43, 278
PspGI CCWGG 2 cut(s) 43, 278
PspN4I GGNNCC 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 233
SaqAI TTAA 2 cut(s) 327, 497
SatI GCNGC 4 cut(s) 228, 231, 489, 492
Sau3AI GATC 2 cut(s) 243, 553
ScrFI CCNGG 2 cut(s) 45, 280
SduI GDGCHC 1 cut(s) 39
SetI ASST 5 cut(s) 235, 271, 284, 306, 552
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 90, 205
Sse9I AATT 3 cut(s) 162, 179, 451
SsiI CCGC 3 cut(s) 106, 133, 373
SspMI CTAG 3 cut(s) 338, 482, 524
StyD4I CCNGG 2 cut(s) 43, 278
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 552
TasI AATT 3 cut(s) 162, 179, 451
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 2 cut(s) 327, 497
Tru9I TTAA 2 cut(s) 327, 497
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 4 cut(s) 227, 230, 488, 491
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 285
XapI RAATTY 2 cut(s) 162, 451
XmaJI CCTAGG 1 cut(s) 481
XspI CTAG 3 cut(s) 338, 482, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.