RchiOBHm_Chr1g0319761

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000877
Physical Location & Seq
Reverse (-)
7434484 .. 7435847
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54998

Sequence Viewer

Length: 531 bp
ATGATGGAACACATCTATGCACGTGTTGATTCCTGCAGGTTGCATTTTGAATCAGCTGAAGCAGCGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCTTCAAACCAAAGGCACAAATGGTACTTTTATCAAACACAACATCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTTCAAGATTGGTAGAGAATGAGAGTGATTCTGGAGTTATATCAGACGGGATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCACACATCGAGGCAATTGATTCTCAACTATCATCATATTTTATTGTAAGTATTGATTTCCTTGAATATATTTTAATGTACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

176

Amino Acids

19.42

Weight (kDa)

5.12

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AccII CGCG 1 cut(s) 412
AclWI GGATC 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 78
AcvI CACGTG 1 cut(s) 23
AfaI GTAC 3 cut(s) 129, 337, 524
AfeI AGCGCT 1 cut(s) 66
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 5 cut(s) 50, 109, 276, 326, 509
AjnI CCWGG 2 cut(s) 184, 378
AluBI AGCT 2 cut(s) 56, 78
AluI AGCT 2 cut(s) 56, 78
Alw21I GWGCWC 1 cut(s) 410
AlwI GGATC 1 cut(s) 370
Aor51HI AGCGCT 1 cut(s) 66
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 62, 341
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 166
BbrPI CACGTG 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 2 cut(s) 74, 328
BccI CCATC 3 cut(s) 244, 372, 426
BciT130I CCWGG 2 cut(s) 186, 380
BfmI CTRYAG 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 27
BisI GCNGC 2 cut(s) 63, 342
BlsI GCNGC 2 cut(s) 64, 343
Bme1390I CCNGG 2 cut(s) 186, 380
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 2 cut(s) 186, 380
BmsI GCATC 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 148, 180
BpmI CTGGAG 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 184
BseBI CCWGG 2 cut(s) 186, 380
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 74, 328
Bsh1236I CGCG 1 cut(s) 412
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 410
BslFI GGGAC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 166, 410
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 1 cut(s) 375
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 444
BspMAI CTGCAG 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 1 cut(s) 370
BspQI GCTCTTC 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 522
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 186, 380
Bst6I CTCTTC 1 cut(s) 398
BstAUI TGTACA 1 cut(s) 522
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 2 cut(s) 228, 240
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 1 cut(s) 412
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 378
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 186, 380
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 184, 378
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 1 cut(s) 412
BstV1I GCAGC 2 cut(s) 74, 328
BsuRI GGCC 1 cut(s) 189
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 410
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 128, 336, 523
CviAII CATG 3 cut(s) 248, 416, 424
CviJI RGCY 9 cut(s) 56, 78, 101, 164, 183, 189, 254, 383, 443
CviKI_1 RGCY 9 cut(s) 56, 78, 101, 164, 183, 189, 254, 383, 443
CviQI GTAC 3 cut(s) 128, 336, 523
DdeI CTNAG 2 cut(s) 228, 240
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 166
Eco47III AGCGCT 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 78
Eco72I CACGTG 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 184, 378
EcoT38I GRGCYC 1 cut(s) 166
FaeI CATG 3 cut(s) 251, 419, 427
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 247, 415, 423
Fnu4HI GCNGC 2 cut(s) 63, 342
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 63, 342
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 63, 342
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 189
HhaI GCGC 1 cut(s) 67
Hin1II CATG 3 cut(s) 251, 419, 427
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 7 cut(s) 29, 50, 203, 242, 299, 322, 464
Hpy188I TCNGA 4 cut(s) 178, 241, 259, 316
Hpy188III TCNNGA 2 cut(s) 276, 303
HpyAV CCTTC 2 cut(s) 115, 401
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 20, 36, 43, 359, 427
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 228, 240
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 3 cut(s) 251, 419, 427
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 1 cut(s) 375
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 2 cut(s) 74, 328
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 1 cut(s) 415
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 2 cut(s) 166, 410
MluCI AATT 2 cut(s) 396, 459
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 4 cut(s) 184, 201, 244, 448
MseI TTAA 2 cut(s) 74, 518
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 186, 380
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 2 cut(s) 186, 380
MvnI CGCG 1 cut(s) 412
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 1 cut(s) 375
NlaIII CATG 3 cut(s) 251, 419, 427
NlaIV GGNNCC 1 cut(s) 444
NspI RCATGY 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 398
PfeI GAWTC 6 cut(s) 29, 50, 203, 299, 322, 464
PkrI GCNGC 2 cut(s) 64, 343
PleI GAGTC 1 cut(s) 250
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 184, 378
PspCI CACGTG 1 cut(s) 23
PspGI CCWGG 2 cut(s) 184, 378
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 3 cut(s) 129, 337, 524
RsaNI GTAC 3 cut(s) 128, 336, 523
RseI CAYNNNNRTG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 2 cut(s) 74, 518
SatI GCNGC 2 cut(s) 63, 342
Sau3AI GATC 1 cut(s) 375
Sau96I GGNCC 1 cut(s) 188
SbfI CCTGCAGG 1 cut(s) 38
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 186, 380
SdaI CCTGCAGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 166, 410
SetI ASST 4 cut(s) 25, 41, 58, 80
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse8387I CCTGCAGG 1 cut(s) 38
Sse9I AATT 2 cut(s) 396, 459
StyD4I CCNGG 2 cut(s) 184, 378
TaiI ACGT 1 cut(s) 25
TaqI TCGA 1 cut(s) 453
TasI AATT 2 cut(s) 396, 459
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 6 cut(s) 29, 50, 203, 299, 322, 464
Tru1I TTAA 2 cut(s) 74, 518
Tru9I TTAA 2 cut(s) 74, 518
TscAI CASTG 1 cut(s) 378
TseI GCWGC 2 cut(s) 62, 341
TspRI CASTG 1 cut(s) 378
XceI RCATGY 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.