Rh1DG049400

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Reverse (-)
8033540 .. 8059040
25501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG049400.1

Sequence Viewer

Length: 1860 bp
ATGATGGAATACATCTATGCACGTGTTGATTCATGCAGGTTGCATTTTGAATCAGCTGAAGCAGCAGCTGGTGTTAAGCTTTCAGTTACAGGGTTCCTTGGCTTCCGTACTATACATCAGGTTGAACCAAAGGCACAAATGGTACTTTTAGCAAACACAACTTCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACAATTCTATTGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGACTGCAATCCAGCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACACGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGAGACGTAGTCACACAAAGGAACGTGCATTGACGATGATGGAAACATTGGTTCAGGGCATCAACGATCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATGTCCCTACAGTTTCAGCCTTGCGGAAGAGAGGCAGTCAAAATTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTTTCAAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGCATAGGGATATTGAGAAGGCACTAGATGGCTTTACATGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCCTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTGTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTGCACGGAAGGTGTTGGATCTTACTAATAATAAGATAATTGATGCTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATTACTGATGATGAAGATAACTTTCTCGTTTGTGGGACCACAAATGCAGCATCTGAGGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTCTACAACAGATAGTTCGGACTGGAAATGGAATAGATATTTGGGGCTTGTATGCTAGATGGCAAAAAATGAAAGGAGACCTCTCAATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGATCTGATTTATGGAAAGATAGAGATCGGTTTAAAAAGTTTGCGAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCATCTACTGGCAGCTGTGATGAACTTCTCTCAGCTGAAAGGCACCTAAGGAACATAATGAAACAGGCGGGGAGTTTCGCAGACATGGAAGAACTTCAACATCTTAAAGCCTGCCTTGATGAAGTGAAGTTAAAACTTGATTGTGATAGTGTGTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

619

Amino Acids

69.49

Weight (kDa)

5.84

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AccB1I GGYRCC 1 cut(s) 1740
AccB7I CCANNNNNTGG 1 cut(s) 822
AccI GTMKAC 1 cut(s) 1853
AciI CCGC 3 cut(s) 682, 910, 1766
AclWI GGATC 5 cut(s) 385, 605, 1085, 1296, 1621
AcsI RAATTY 2 cut(s) 700, 988
AcuI CTGAAG 2 cut(s) 78, 1205
AcvI CACGTG 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 926
AfaI GTAC 3 cut(s) 109, 144, 352
AfiI CCNNNNNNNGG 3 cut(s) 620, 822, 1100
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 9 cut(s) 50, 125, 341, 776, 866, 885, 988, 1192, 1796
AjnI CCWGG 5 cut(s) 199, 393, 619, 815, 1608
AjuI GAANNNNNNNTTGG 4 cut(s) 1507, 1539, 1649, 1681
Alw21I GWGCWC 2 cut(s) 425, 1461
Alw26I GTCTC 3 cut(s) 541, 918, 1554
AlwI GGATC 5 cut(s) 385, 605, 1085, 1296, 1621
AlwNI CAGNNNCTG 3 cut(s) 68, 770, 1430
Ama87I CYCGRG 2 cut(s) 900, 1446
AoxI GGCC 2 cut(s) 202, 981
ApoI RAATTY 2 cut(s) 700, 988
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
Asp700I GAANNNNTTC 1 cut(s) 1791
AspA2I CCTAGG 1 cut(s) 1018
AspS9I GGNCC 2 cut(s) 203, 1413
AsuHPI GGTGA 2 cut(s) 848, 1353
AvaI CYCGRG 2 cut(s) 900, 1446
AvaII GGWCC 1 cut(s) 1413
AvrII CCTAGG 1 cut(s) 1018
AxyI CCTNAGG 1 cut(s) 1745
BanI GGYRCC 1 cut(s) 1740
BanII GRGCYC 1 cut(s) 181
BbrPI CACGTG 1 cut(s) 23
Bbv12I GWGCWC 2 cut(s) 425, 1461
BccI CCATC 6 cut(s) 259, 441, 577, 998, 1058, 1536
BceAI ACGGC 2 cut(s) 349, 806
BciT130I CCWGG 5 cut(s) 201, 395, 621, 817, 1610
BciVI GTATCC 1 cut(s) 1008
BclI TGATCA 1 cut(s) 780
BcoDI GTCTC 3 cut(s) 541, 918, 1554
BfaI CTAG 5 cut(s) 875, 1019, 1061, 1265, 1539
BfmI CTRYAG 4 cut(s) 666, 742, 1222, 1236
BfuAI ACCTGC 1 cut(s) 27
BfuI GTATCC 1 cut(s) 1008
BglI GCCNNNNNGGC 1 cut(s) 1022
BlnI CCTAGG 1 cut(s) 1018
BlpI GCTNAGC 2 cut(s) 906, 1455
Bme1390I CCNGG 5 cut(s) 201, 395, 621, 817, 1610
Bme18I GGWCC 1 cut(s) 1413
BmeT110I CYCGRG 2 cut(s) 900, 1446
BmgT120I GGNCC 2 cut(s) 203, 1413
BmiI GGNNCC 4 cut(s) 95, 459, 1414, 1742
BmrFI CCNGG 5 cut(s) 201, 395, 621, 817, 1610
BmsI GCATC 6 cut(s) 256, 503, 612, 844, 1303, 1436
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BpmI CTGGAG 2 cut(s) 339, 603
Bpu10I CCTNAGC 1 cut(s) 1257
Bpu1102I GCTNAGC 2 cut(s) 906, 1455
BsaAI YACGTR 2 cut(s) 23, 530
BsaBI GATNNNNATC 1 cut(s) 1635
BsaI GGTCTC 2 cut(s) 918, 1554
BsaJI CCNNGG 7 cut(s) 97, 199, 815, 1018, 1474, 1609, 1665
Bsc4I CCNNNNNNNGG 3 cut(s) 620, 822, 1100
Bse1I ACTGG 2 cut(s) 1510, 1711
Bse21I CCTNAGG 1 cut(s) 1745
Bse3DI GCAATG 3 cut(s) 984, 1164, 1255
Bse8I GATNNNNATC 1 cut(s) 1635
BseBI CCWGG 5 cut(s) 201, 395, 621, 817, 1610
BseDI CCNNGG 7 cut(s) 97, 199, 815, 1018, 1474, 1609, 1665
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 1635
BseLI CCNNNNNNNGG 3 cut(s) 620, 822, 1100
BseMI GCAATG 3 cut(s) 984, 1164, 1255
BseMII CTCAG 7 cut(s) 246, 497, 1271, 1308, 1422, 1446, 1743
BseNI ACTGG 2 cut(s) 1510, 1711
BsgI GTGCAG 2 cut(s) 1257, 1594
BshFI GGCC 2 cut(s) 204, 983
BshNI GGYRCC 1 cut(s) 1740
BsiHKAI GWGCWC 2 cut(s) 425, 1461
BsiHKCI CYCGRG 2 cut(s) 900, 1446
BslFI GGGAC 3 cut(s) 244, 647, 1426
BslI CCNNNNNNNGG 3 cut(s) 620, 822, 1100
BsmAI GTCTC 3 cut(s) 541, 918, 1554
BsmBI CGTCTC 1 cut(s) 541
BsmFI GGGAC 3 cut(s) 244, 647, 1426
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 2 cut(s) 204, 983
Bso31I GGTCTC 2 cut(s) 918, 1554
BsoBI CYCGRG 2 cut(s) 900, 1446
Bsp1286I GDGCHC 3 cut(s) 181, 425, 1461
Bsp143I GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
Bsp1720I GCTNAGC 2 cut(s) 906, 1455
BspACI CCGC 3 cut(s) 682, 910, 1766
BspANI GGCC 2 cut(s) 204, 983
BspCNI CTCAG 7 cut(s) 247, 496, 1270, 1309, 1423, 1447, 1742
BspLI GGNNCC 4 cut(s) 95, 459, 1414, 1742
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 5 cut(s) 385, 605, 1085, 1296, 1621
BspQI GCTCTTC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 1740
BspTNI GGTCTC 2 cut(s) 918, 1554
BsrDI GCAATG 3 cut(s) 984, 1164, 1255
BsrI ACTGG 2 cut(s) 1510, 1711
BssECI CCNNGG 7 cut(s) 97, 199, 815, 1018, 1474, 1609, 1665
BssMI GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
BssT1I CCWWGG 4 cut(s) 97, 1018, 1474, 1665
Bst2UI CCWGG 5 cut(s) 201, 395, 621, 817, 1610
Bst4CI ACNGT 2 cut(s) 670, 1212
Bst6I CTCTTC 3 cut(s) 413, 680, 1142
BstAPI GCANNNNNTGC 1 cut(s) 926
BstBAI YACGTR 2 cut(s) 23, 530
BstC8I GCNNGC 4 cut(s) 384, 859, 922, 1810
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 8 cut(s) 393, 613, 783, 1093, 1291, 1604, 1616, 1639
BstMAI GTCTC 3 cut(s) 541, 918, 1554
BstMBI GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
BstMWI GCNNNNNNNGC 5 cut(s) 62, 926, 1022, 1166, 1268
BstNI CCWGG 5 cut(s) 201, 395, 621, 817, 1610
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 5 cut(s) 199, 393, 619, 815, 1608
BstSFI CTRYAG 4 cut(s) 666, 742, 1222, 1236
BstSNI TACGTA 1 cut(s) 530
BstX2I RGATCY 2 cut(s) 1288, 1613
BstYI RGATCY 2 cut(s) 1288, 1613
Bsu36I CCTNAGG 1 cut(s) 1745
BsuI GTATCC 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 204, 983
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 393, 931
BtsIMutI CAGTG 3 cut(s) 393, 931, 1181
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 4 cut(s) 384, 859, 922, 1810
CaiI CAGNNNCTG 3 cut(s) 68, 770, 1430
Cfr13I GGNCC 2 cut(s) 203, 1413
Csp6I GTAC 3 cut(s) 108, 143, 351
CviAII CATG 9 cut(s) 33, 263, 431, 439, 1074, 1110, 1229, 1354, 1783
CviQI GTAC 3 cut(s) 108, 143, 351
DpnI GATC 8 cut(s) 392, 612, 782, 1092, 1290, 1603, 1615, 1638
DpnII GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
DraI TTTAAA 1 cut(s) 1645
DraIII CACNNNGTG 1 cut(s) 926
Eam1104I CTCTTC 3 cut(s) 413, 680, 1142
EarI CTCTTC 3 cut(s) 413, 680, 1142
Eco105I TACGTA 1 cut(s) 530
Eco130I CCWWGG 4 cut(s) 97, 1018, 1474, 1665
Eco24I GRGCYC 1 cut(s) 181
Eco31I GGTCTC 2 cut(s) 918, 1554
Eco47I GGWCC 1 cut(s) 1413
Eco57I CTGAAG 2 cut(s) 78, 1205
Eco72I CACGTG 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 1745
Eco88I CYCGRG 2 cut(s) 900, 1446
EcoRI GAATTC 1 cut(s) 988
EcoRII CCWGG 5 cut(s) 199, 393, 619, 815, 1608
EcoT14I CCWWGG 4 cut(s) 97, 1018, 1474, 1665
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 4 cut(s) 97, 1018, 1474, 1665
Esp3I CGTCTC 1 cut(s) 541
FaeI CATG 9 cut(s) 36, 266, 434, 442, 1077, 1113, 1232, 1357, 1786
FalI AAGNNNNNCTT 4 cut(s) 1342, 1374, 1797, 1829
FaqI GGGAC 3 cut(s) 244, 647, 1426
FatI CATG 9 cut(s) 32, 262, 430, 438, 1073, 1109, 1228, 1353, 1782
FauI CCCGC 1 cut(s) 1759
FauNDI CATATG 1 cut(s) 1134
FbaI TGATCA 1 cut(s) 780
FblI GTMKAC 1 cut(s) 1853
FokI GGATG 1 cut(s) 234
FriOI GRGCYC 1 cut(s) 181
FspBI CTAG 5 cut(s) 875, 1019, 1061, 1265, 1539
GsuI CTGGAG 2 cut(s) 339, 603
HaeIII GGCC 2 cut(s) 204, 983
Hin1II CATG 9 cut(s) 36, 266, 434, 442, 1077, 1113, 1232, 1357, 1786
HindIII AAGCTT 3 cut(s) 77, 1158, 1581
HinfI GANTC 9 cut(s) 29, 50, 257, 286, 314, 479, 542, 637, 971
HphI GGTGA 2 cut(s) 848, 1353
Hpy166II GTNNAC 1 cut(s) 1854
Hpy188I TCNGA 9 cut(s) 193, 256, 274, 331, 799, 1432, 1503, 1601, 1618
Hpy188III TCNNGA 7 cut(s) 318, 546, 784, 1001, 1094, 1265, 1448
Hpy8I GTNNAC 1 cut(s) 1854
Hpy99I CGWCG 1 cut(s) 513
HpyAV CCTTC 3 cut(s) 416, 1048, 1273
HpyCH4III ACNGT 2 cut(s) 670, 1212
HpyCH4IV ACGT 5 cut(s) 22, 529, 550, 568, 840
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 926, 1022, 1166, 1268
HpySE526I ACGT 5 cut(s) 22, 529, 550, 568, 840
Hsp92II CATG 9 cut(s) 36, 266, 434, 442, 1077, 1113, 1232, 1357, 1786
Ksp22I TGATCA 1 cut(s) 780
Kzo9I GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
LguI GCTCTTC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 463
LweI GCATC 6 cut(s) 256, 503, 612, 844, 1303, 1436
MaeI CTAG 5 cut(s) 875, 1019, 1061, 1265, 1539
MaeII ACGT 5 cut(s) 22, 529, 550, 568, 840
MaeIII GTNAC 4 cut(s) 85, 554, 836, 841
MalI GATC 8 cut(s) 392, 612, 782, 1092, 1290, 1603, 1615, 1638
MboI GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
MboII GAAGA 6 cut(s) 430, 697, 1159, 1403, 1689, 1799
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 2 cut(s) 1288, 1613
MhlI GDGCHC 3 cut(s) 181, 425, 1461
MlyI GAGTC 4 cut(s) 266, 280, 551, 980
MmeI TCCRAC 1 cut(s) 1266
MroXI GAANNNNTTC 1 cut(s) 1791
MseI TTAA 7 cut(s) 75, 1034, 1589, 1644, 1803, 1829, 1858
MspA1I CMGCKG 5 cut(s) 56, 68, 770, 1713, 1733
MspR9I CCNGG 5 cut(s) 201, 395, 621, 817, 1610
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 336
MvaI CCWGG 5 cut(s) 201, 395, 621, 817, 1610
MwoI GCNNNNNNNGC 5 cut(s) 62, 926, 1022, 1166, 1268
NdeI CATATG 1 cut(s) 1134
NdeII GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
NlaIII CATG 9 cut(s) 36, 266, 434, 442, 1077, 1113, 1232, 1357, 1786
NlaIV GGNNCC 4 cut(s) 95, 459, 1414, 1742
NmuCI GTSAC 2 cut(s) 554, 836
NspI RCATGY 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 413
PctI GAATGC 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 1791
PfeI GAWTC 5 cut(s) 29, 50, 314, 479, 637
PflFI GACNNNGTC 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 822
PfoI TCCNGGA 1 cut(s) 619
PleI GAGTC 4 cut(s) 265, 280, 550, 979
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 4 cut(s) 265, 280, 550, 979
Ppu21I YACGTR 2 cut(s) 23, 530
Psp6I CCWGG 5 cut(s) 199, 393, 619, 815, 1608
PspCI CACGTG 1 cut(s) 23
PspGI CCWGG 5 cut(s) 199, 393, 619, 815, 1608
PspN4I GGNNCC 4 cut(s) 95, 459, 1414, 1742
PspPI GGNCC 2 cut(s) 203, 1413
PstNI CAGNNNCTG 3 cut(s) 68, 770, 1430
PsuI RGATCY 2 cut(s) 1288, 1613
PsyI GACNNNGTC 1 cut(s) 552
PvuII CAGCTG 5 cut(s) 56, 68, 770, 1713, 1733
RsaI GTAC 3 cut(s) 109, 144, 352
RsaNI GTAC 3 cut(s) 108, 143, 351
SapI GCTCTTC 1 cut(s) 413
SaqAI TTAA 7 cut(s) 75, 1034, 1589, 1644, 1803, 1829, 1858
Sau3AI GATC 8 cut(s) 390, 610, 780, 1090, 1288, 1601, 1613, 1636
Sau96I GGNCC 2 cut(s) 203, 1413
SchI GAGTC 4 cut(s) 266, 280, 551, 980
ScrFI CCNGG 5 cut(s) 201, 395, 621, 817, 1610
SduI GDGCHC 3 cut(s) 181, 425, 1461
SfaNI GCATC 6 cut(s) 256, 503, 612, 844, 1303, 1436
SfcI CTRYAG 4 cut(s) 666, 742, 1222, 1236
SinI GGWCC 1 cut(s) 1413
SnaBI TACGTA 1 cut(s) 530
SsiI CCGC 3 cut(s) 682, 910, 1766
SspI AATATT 2 cut(s) 735, 1120
SspMI CTAG 5 cut(s) 875, 1019, 1061, 1265, 1539
StyD4I CCNGG 5 cut(s) 199, 393, 619, 815, 1608
StyI CCWWGG 4 cut(s) 97, 1018, 1474, 1665
TaaI ACNGT 2 cut(s) 670, 1212
TaiI ACGT 5 cut(s) 25, 532, 553, 571, 843
TaqI TCGA 2 cut(s) 468, 545
TfiI GAWTC 5 cut(s) 29, 50, 314, 479, 637
Tru1I TTAA 7 cut(s) 75, 1034, 1589, 1644, 1803, 1829, 1858
Tru9I TTAA 7 cut(s) 75, 1034, 1589, 1644, 1803, 1829, 1858
TscAI CASTG 3 cut(s) 393, 931, 1188
TseFI GTSAC 2 cut(s) 554, 836
Tsp45I GTSAC 2 cut(s) 554, 836
TspGWI ACGGA 2 cut(s) 95, 1291
TspRI CASTG 3 cut(s) 393, 931, 1188
Tth111I GACNNNGTC 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 822
VpaK11BI GGWCC 1 cut(s) 1413
XapI RAATTY 2 cut(s) 700, 988
XbaI TCTAGA 1 cut(s) 1264
XceI RCATGY 1 cut(s) 442
XmaJI CCTAGG 1 cut(s) 1018
XmiI GTMKAC 1 cut(s) 1853
XmnI GAANNNNTTC 1 cut(s) 1791
XspI CTAG 5 cut(s) 875, 1019, 1061, 1265, 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.