Rh1CG045100

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000877
Physical Location & Seq
Reverse (-)
8613957 .. 8628485
14529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG045100.1

Sequence Viewer

Length: 2736 bp
ATGTCTGAACCGTCACCGGACCTCGCTATCCTCCGCGGCTACGAGCTCCGTCTCCTCCGCTGCACCTTCCTCTCTCCTCCTCCGCCGTCCGATCCTGAACAACCGTCCGATCAAACCTCGCCCACTCACCTCCTCTCCCCTCTAATCTCCGCCCTCCTCACTTCCATCGAGTCCGGCCGATACCTCGAAGCCCTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAACTCACCGATTCCGACTCGCTCGGCGACCACGACGCCGACCGAGTCTACTCCGAGTTGCTCCGCCGCGTGGAGTCGTTCATATGCGAAGAAGCTGAGGATAATGGGAAGGACCAGGCCTATAGAGTCGTCGTCGTACTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTTTGGAGGGGCTGCCAAGGTGTCCGTTGCCACTGGAAGTGCCCTTATGTGATGAATGGGACAATTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCACTAGGGTCACCCTTCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTTTGTTTGACCTTTTGCATGTCTTCACAAGTGAAACTTTGAACCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACACTTGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCCTGCAGGTTGCATTTTGAATCAGCTGAAGCAGCGGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGGTCGAACCAAAGGCACAAATGGTACTTTTAGCAAATGCAACTTCGTCAGAGAGTGGGGCTCTCTGCTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCACGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTACTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGAGACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATCGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATATGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATATTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTTTCAAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATTGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTCTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTACATGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATCACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGTAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGATAGTCCGAAGTGGAAATGGAGCAGATATTTGGGGCATGTATGCTAGATGGCAAAAAATGAAAGGAGACCTTGCGATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGAGCTGATTTGTGGAAAGATAGAGATCGGTTTAAAAAGTTTGCAAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCGTCTACTGGCAGCCGTGATGAACTTCTCTCAGCTGAAAGGCACCTAAGGAACATAATTAAACAGGCGGGGAGTTTCTCAGACATGGAAGAACTTCAACATCTTAAAGCCTGCCTTGATGAAGTGAAGTTAAATCTTGATTCTGATAGTGCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

911

Amino Acids

101.89

Weight (kDa)

5.35

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_CcmH_CycH PF23914 628 - 721 1e-05 Cytochrome c-type biogenesis protein H TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 2616
AccB7I CCANNNNNTGG 1 cut(s) 1701
AccBSI CCGCTC 1 cut(s) 688
AccI GTMKAC 2 cut(s) 273, 2579
AccII CGCG 4 cut(s) 36, 294, 490, 1267
AclWI GGATC 5 cut(s) 86, 811, 1225, 1964, 2175
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 1867
AcuI CTGAAG 2 cut(s) 918, 2084
AcvI CACGTG 1 cut(s) 863
AcyI GRCGYC 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 1805
AfaI GTAC 4 cut(s) 363, 949, 984, 1192
AfiI CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
AflIII ACRYGT 1 cut(s) 862
AjnI CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
AleI CACNNNNGTG 1 cut(s) 2222
AloI GAACNNNNNNTCC 2 cut(s) 1530, 1562
Alw21I GWGCWC 3 cut(s) 48, 1265, 2337
Alw26I GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
AlwI GGATC 5 cut(s) 86, 811, 1225, 1964, 2175
AlwNI CAGNNNCTG 3 cut(s) 908, 1649, 2306
Ama87I CYCGRG 3 cut(s) 1779, 1953, 2322
AoxI GGCC 4 cut(s) 175, 342, 1042, 1860
ApoI RAATTY 1 cut(s) 1867
ArsI GACNNNNNNTTYG 2 cut(s) 1757, 1789
Asp700I GAANNNNTTC 1 cut(s) 2667
AspA2I CCTAGG 1 cut(s) 1897
AspLEI GCGC 2 cut(s) 490, 675
AspS9I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
AsuHPI GGTGA 8 cut(s) 6, 119, 187, 223, 649, 1547, 1727, 2232
AvaI CYCGRG 3 cut(s) 1779, 1953, 2322
AvaII GGWCC 4 cut(s) 19, 337, 416, 2289
AvrII CCTAGG 1 cut(s) 1897
AxyI CCTNAGG 1 cut(s) 2621
BaeGI GKGCMC 1 cut(s) 462
BanI GGYRCC 1 cut(s) 2616
BanII GRGCYC 3 cut(s) 48, 1021, 1455
BauI CACGAG 1 cut(s) 1103
BbrPI CACGTG 1 cut(s) 863
BbsI GAAGAC 3 cut(s) 214, 684, 712
Bbv12I GWGCWC 3 cut(s) 48, 1265, 2337
BbvCI CCTCAGC 1 cut(s) 321
BceAI ACGGC 5 cut(s) 70, 359, 1189, 1685, 2574
BciT130I CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BciVI GTATCC 1 cut(s) 1887
BclI TGATCA 1 cut(s) 1659
BcoDI GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
BfaI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
BfmI CTRYAG 5 cut(s) 346, 874, 1506, 1621, 2101
BfuAI ACCTGC 1 cut(s) 867
BfuI GTATCC 1 cut(s) 1887
BglI GCCNNNNNGGC 1 cut(s) 1901
BlnI CCTAGG 1 cut(s) 1897
BlpI GCTNAGC 2 cut(s) 1785, 2331
Bme1390I CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
Bme18I GGWCC 4 cut(s) 19, 337, 416, 2289
BmeT110I CYCGRG 3 cut(s) 1779, 1953, 2322
BmgT120I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
BmiI GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
BmrFI CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BmsI GCATC 4 cut(s) 1096, 1343, 1723, 2182
BoxI GACNNNNGTC 1 cut(s) 812
BpiI GAAGAC 3 cut(s) 214, 684, 712
BplI GAGNNNNNCTC 2 cut(s) 1003, 1035
BpmI CTGGAG 2 cut(s) 1179, 1443
Bpu10I CCTNAGC 2 cut(s) 321, 2136
Bpu1102I GCTNAGC 2 cut(s) 1785, 2331
BsaAI YACGTR 2 cut(s) 863, 1370
BsaBI GATNNNNATC 2 cut(s) 1499, 2511
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 2 cut(s) 1797, 2430
BsaJI CCNNGG 7 cut(s) 34, 434, 1039, 1694, 1897, 2485, 2541
BsaWI WCCGGW 2 cut(s) 16, 413
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 1557, 1587
Bsc4I CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 456, 2587
Bse21I CCTNAGG 1 cut(s) 2621
Bse3DI GCAATG 4 cut(s) 369, 1863, 2134, 2262
Bse8I GATNNNNATC 2 cut(s) 1499, 2511
BseBI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BseDI CCNNGG 7 cut(s) 34, 434, 1039, 1694, 1897, 2485, 2541
BseGI GGATG 1 cut(s) 1087
BseJI GATNNNNATC 2 cut(s) 1499, 2511
BseLI CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
BseMI GCAATG 4 cut(s) 369, 1863, 2134, 2262
BseNI ACTGG 2 cut(s) 456, 2587
BseRI GAGGAG 6 cut(s) 44, 66, 69, 122, 146, 1018
BseSI GKGCMC 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 175
BsgI GTGCAG 2 cut(s) 46, 2470
Bsh1236I CGCG 4 cut(s) 36, 294, 490, 1267
Bsh1285I CGRYCG 2 cut(s) 178, 268
BshFI GGCC 4 cut(s) 177, 344, 1044, 1862
BshNI GGYRCC 1 cut(s) 2616
BsiEI CGRYCG 2 cut(s) 178, 268
BsiHKAI GWGCWC 3 cut(s) 48, 1265, 2337
BsiHKCI CYCGRG 3 cut(s) 1779, 1953, 2322
BsiSI CCGG 4 cut(s) 17, 174, 214, 414
BslFI GGGAC 3 cut(s) 491, 1084, 2302
BslI CCNNNNNNNGG 8 cut(s) 295, 425, 1460, 1701, 1979, 2092, 2285, 2286
BsmAI GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
BsmBI CGTCTC 2 cut(s) 56, 1381
BsmFI GGGAC 3 cut(s) 491, 1084, 2302
BsmI GAATGC 2 cut(s) 675, 1176
BsnI GGCC 4 cut(s) 177, 344, 1044, 1862
Bso31I GGTCTC 2 cut(s) 1797, 2430
BsoBI CYCGRG 3 cut(s) 1779, 1953, 2322
Bsp1286I GDGCHC 6 cut(s) 48, 462, 1021, 1265, 1455, 2337
Bsp143I GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
Bsp1720I GCTNAGC 2 cut(s) 1785, 2331
BspANI GGCC 4 cut(s) 177, 344, 1044, 1862
BspFNI CGCG 4 cut(s) 36, 294, 490, 1267
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
BspMAI CTGCAG 1 cut(s) 878
BspMI ACCTGC 1 cut(s) 867
BspPI GGATC 5 cut(s) 86, 811, 1225, 1964, 2175
BspQI GCTCTTC 1 cut(s) 1253
BspT107I GGYRCC 1 cut(s) 2616
BspTNI GGTCTC 2 cut(s) 1797, 2430
BsrBI CCGCTC 1 cut(s) 688
BsrDI GCAATG 4 cut(s) 369, 1863, 2134, 2262
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 2 cut(s) 456, 2587
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 7 cut(s) 34, 434, 1039, 1694, 1897, 2485, 2541
BssMI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 1103
BssT1I CCWWGG 3 cut(s) 434, 1897, 2541
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
Bst4CI ACNGT 4 cut(s) 12, 105, 1510, 2091
Bst6I CTCTTC 2 cut(s) 1253, 2021
BstACI GRCGYC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 1805
BstBAI YACGTR 2 cut(s) 863, 1370
BstC8I GCNNGC 5 cut(s) 511, 1265, 1738, 1801, 2686
BstDSI CCRYGG 1 cut(s) 34
BstEII GGTNACC 1 cut(s) 655
BstF5I GGATG 1 cut(s) 1087
BstFNI CGCG 4 cut(s) 36, 294, 490, 1267
BstHHI GCGC 2 cut(s) 490, 675
BstKTI GATC 9 cut(s) 94, 112, 806, 1233, 1662, 1972, 2170, 2480, 2515
BstMAI GTCTC 5 cut(s) 56, 820, 1381, 1797, 2430
BstMBI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
BstMCI CGRYCG 2 cut(s) 178, 268
BstMWI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1805, 1901, 2045, 2147
BstNI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
BstNSI RCATGY 3 cut(s) 719, 1282, 2410
BstPAI GACNNNNGTC 1 cut(s) 812
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
BstSFI CTRYAG 5 cut(s) 346, 874, 1506, 1621, 2101
BstSLI GKGCMC 1 cut(s) 462
BstSNI TACGTA 1 cut(s) 1370
BstUI CGCG 4 cut(s) 36, 294, 490, 1267
BstV2I GAAGAC 3 cut(s) 214, 684, 712
BstX2I RGATCY 1 cut(s) 2167
BstYI RGATCY 1 cut(s) 2167
BstZI CGGCCG 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 2621
BsuI GTATCC 1 cut(s) 1887
BsuRI GGCC 4 cut(s) 177, 344, 1044, 1862
BtgI CCRYGG 1 cut(s) 34
BtgZI GCGATG 1 cut(s) 2459
BtsCI GGATG 1 cut(s) 1087
BtsI GCAGTG 2 cut(s) 1233, 1810
BtsIMutI CAGTG 6 cut(s) 449, 825, 1233, 1810, 2060, 2290
BveI ACCTGC 1 cut(s) 867
Cac8I GCNNGC 5 cut(s) 511, 1265, 1738, 1801, 2686
CaiI CAGNNNCTG 3 cut(s) 908, 1649, 2306
CciI TCATGA 1 cut(s) 573
CfoI GCGC 2 cut(s) 490, 675
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 2 cut(s) 215, 269
Csp6I GTAC 4 cut(s) 362, 948, 983, 1191
CviQI GTAC 4 cut(s) 362, 948, 983, 1191
DpnI GATC 9 cut(s) 93, 111, 805, 1232, 1661, 1971, 2169, 2479, 2514
DpnII GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
DraI TTTAAA 1 cut(s) 2521
DraIII CACNNNGTG 1 cut(s) 1805
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 1253, 2021
EarI CTCTTC 2 cut(s) 1253, 2021
EciI GGCGGA 4 cut(s) 72, 139, 190, 278
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 175
Eco105I TACGTA 1 cut(s) 1370
Eco130I CCWWGG 3 cut(s) 434, 1897, 2541
Eco147I AGGCCT 1 cut(s) 344
Eco24I GRGCYC 3 cut(s) 48, 1021, 1455
Eco31I GGTCTC 2 cut(s) 1797, 2430
Eco47I GGWCC 4 cut(s) 19, 337, 416, 2289
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 918, 2084
Eco72I CACGTG 1 cut(s) 863
Eco81I CCTNAGG 1 cut(s) 2621
Eco88I CYCGRG 3 cut(s) 1779, 1953, 2322
Eco91I GGTNACC 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 1867
EcoRII CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
EcoT14I CCWWGG 3 cut(s) 434, 1897, 2541
EcoT38I GRGCYC 3 cut(s) 48, 1021, 1455
ErhI CCWWGG 3 cut(s) 434, 1897, 2541
Esp3I CGTCTC 2 cut(s) 56, 1381
FaqI GGGAC 3 cut(s) 491, 1084, 2302
FauI CCCGC 1 cut(s) 2635
FauNDI CATATG 3 cut(s) 308, 619, 2013
FbaI TGATCA 1 cut(s) 1659
FblI GTMKAC 2 cut(s) 273, 2579
FokI GGATG 1 cut(s) 1074
FriOI GRGCYC 3 cut(s) 48, 1021, 1455
FspBI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
GlaI GCGC 2 cut(s) 489, 674
GsuI CTGGAG 2 cut(s) 1179, 1443
HaeIII GGCC 4 cut(s) 177, 344, 1044, 1862
HapII CCGG 4 cut(s) 17, 174, 214, 414
HgaI GACGC 2 cut(s) 215, 269
HhaI GCGC 2 cut(s) 490, 675
Hin1I GRCGYC 1 cut(s) 261
Hin6I GCGC 2 cut(s) 488, 673
HinP1I GCGC 2 cut(s) 488, 673
HindIII AAGCTT 3 cut(s) 917, 2037, 2457
HpaII CCGG 4 cut(s) 17, 174, 214, 414
HphI GGTGA 8 cut(s) 6, 119, 187, 223, 649, 1547, 1727, 2232
Hpy166II GTNNAC 3 cut(s) 274, 1538, 2580
Hpy8I GTNNAC 3 cut(s) 274, 1538, 2580
Hpy99I CGWCG 5 cut(s) 209, 263, 359, 362, 1353
HpyAV CCTTC 8 cut(s) 76, 328, 593, 671, 1256, 1519, 1927, 2152
HpyCH4III ACNGT 4 cut(s) 12, 105, 1510, 2091
HpyCH4IV ACGT 6 cut(s) 752, 862, 1369, 1390, 1408, 1719
HpyF10VI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1805, 1901, 2045, 2147
HpySE526I ACGT 6 cut(s) 752, 862, 1369, 1390, 1408, 1719
Hsp92I GRCGYC 1 cut(s) 261
HspAI GCGC 2 cut(s) 488, 673
Ksp22I TGATCA 1 cut(s) 1659
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
LguI GCTCTTC 1 cut(s) 1253
LmnI GCTCC 8 cut(s) 51, 291, 630, 1031, 1303, 1450, 2390, 2489
LweI GCATC 4 cut(s) 1096, 1343, 1723, 2182
MaeI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
MaeII ACGT 6 cut(s) 752, 862, 1369, 1390, 1408, 1719
MaeIII GTNAC 9 cut(s) 12, 655, 763, 779, 925, 1394, 1715, 1720, 2270
MalI GATC 9 cut(s) 93, 111, 805, 1232, 1661, 1971, 2169, 2479, 2514
MbiI CCGCTC 1 cut(s) 688
MboI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
MboII GAAGA 9 cut(s) 214, 326, 589, 684, 712, 1270, 2038, 2565, 2675
MfeI CAATTG 2 cut(s) 481, 1314
MflI RGATCY 1 cut(s) 2167
MhlI GDGCHC 6 cut(s) 48, 462, 1021, 1265, 1455, 2337
MlyI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1391
MmeI TCCRAC 3 cut(s) 264, 735, 2145
MroXI GAANNNNTTC 1 cut(s) 2667
MseI TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
MslI CAYNNNNRTG 2 cut(s) 578, 2222
MspA1I CMGCKG 7 cut(s) 36, 60, 896, 905, 1551, 1649, 2609
MspI CCGG 4 cut(s) 17, 174, 214, 414
MspR9I CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
MunI CAATTG 2 cut(s) 481, 1314
Mva1269I GAATGC 2 cut(s) 675, 1176
MvaI CCWGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
MvnI CGCG 4 cut(s) 36, 294, 490, 1267
MwoI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1805, 1901, 2045, 2147
NdeI CATATG 3 cut(s) 308, 619, 2013
NdeII GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
NlaIV GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 4 cut(s) 12, 655, 1394, 1715
NspI RCATGY 3 cut(s) 719, 1282, 2410
OliI CACNNNNGTG 1 cut(s) 2222
PagI TCATGA 1 cut(s) 573
PceI AGGCCT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 2 cut(s) 675, 1176
PdmI GAANNNNTTC 1 cut(s) 2667
PflFI GACNNNGTC 2 cut(s) 269, 1392
PflMI CCANNNNNTGG 1 cut(s) 1701
PfoI TCCNGGA 1 cut(s) 1459
PleI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1390
PmaCI CACGTG 1 cut(s) 863
PmlI CACGTG 1 cut(s) 863
PpsI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1390
Ppu21I YACGTR 2 cut(s) 863, 1370
PshAI GACNNNNGTC 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
PspCI CACGTG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 655
PspGI CCWGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
PspN4I GGNNCC 5 cut(s) 632, 1299, 1452, 2290, 2618
PspPI GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
PstI CTGCAG 1 cut(s) 878
PstNI CAGNNNCTG 3 cut(s) 908, 1649, 2306
PsuI RGATCY 1 cut(s) 2167
PsyI GACNNNGTC 2 cut(s) 269, 1392
PvuII CAGCTG 3 cut(s) 896, 1649, 2609
RsaI GTAC 4 cut(s) 363, 949, 984, 1192
RsaNI GTAC 4 cut(s) 362, 948, 983, 1191
RseI CAYNNNNRTG 2 cut(s) 578, 2222
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 1253
SaqAI TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
Sau3AI GATC 9 cut(s) 91, 109, 803, 1230, 1659, 1969, 2167, 2477, 2512
Sau96I GGNCC 5 cut(s) 19, 337, 416, 1043, 2289
SbfI CCTGCAGG 1 cut(s) 878
SchI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1391
ScrFI CCNGG 6 cut(s) 341, 1041, 1235, 1461, 1696, 2486
SdaI CCTGCAGG 1 cut(s) 878
SduI GDGCHC 6 cut(s) 48, 462, 1021, 1265, 1455, 2337
SfaNI GCATC 4 cut(s) 1096, 1343, 1723, 2182
SfcI CTRYAG 5 cut(s) 346, 874, 1506, 1621, 2101
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 4 cut(s) 19, 337, 416, 2289
SmiMI CAYNNNNRTG 2 cut(s) 578, 2222
SnaBI TACGTA 1 cut(s) 1370
Sse8387I CCTGCAGG 1 cut(s) 878
SseBI AGGCCT 1 cut(s) 344
SspI AATATT 3 cut(s) 541, 1581, 1999
SspMI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 6 cut(s) 339, 1039, 1233, 1459, 1694, 2484
StyI CCWWGG 3 cut(s) 434, 1897, 2541
TaaI ACNGT 4 cut(s) 12, 105, 1510, 2091
TaiI ACGT 6 cut(s) 755, 865, 1372, 1393, 1411, 1722
TaqI TCGA 7 cut(s) 168, 186, 681, 806, 963, 1308, 1385
TaqII GACCGA 1 cut(s) 282
TauI GCSGC 3 cut(s) 39, 294, 908
Tru1I TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
Tru9I TTAA 8 cut(s) 915, 1913, 2465, 2520, 2634, 2679, 2705, 2734
TscAI CASTG 6 cut(s) 456, 825, 1233, 1810, 2067, 2290
TseFI GTSAC 4 cut(s) 12, 655, 1394, 1715
Tsp45I GTSAC 4 cut(s) 12, 655, 1394, 1715
TspGWI ACGGA 3 cut(s) 38, 432, 935
TspRI CASTG 6 cut(s) 456, 825, 1233, 1810, 2067, 2290
Tth111I GACNNNGTC 2 cut(s) 269, 1392
Van91I CCANNNNNTGG 1 cut(s) 1701
VpaK11BI GGWCC 4 cut(s) 19, 337, 416, 2289
XapI RAATTY 1 cut(s) 1867
XbaI TCTAGA 2 cut(s) 2116, 2143
XceI RCATGY 3 cut(s) 719, 1282, 2410
XmaJI CCTAGG 1 cut(s) 1897
XmiI GTMKAC 2 cut(s) 273, 2579
XmnI GAANNNNTTC 1 cut(s) 2667
XspI CTAG 7 cut(s) 651, 1754, 1898, 1940, 2117, 2144, 2415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.