Rh1DG048200

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Reverse (-)
7896010 .. 7897549
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG048200.1

Sequence Viewer

Length: 372 bp
ATGGTACTTTTATCAAACACAACATCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTTCAAGATTGGTAGAGAATGAGAGTGATTCTGGAGTTATATCAGACGGGATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCAACATGATGACATGCAGAGATGGGAAATGGCTCCACACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

123

Amino Acids

13.25

Weight (kDa)

4.87

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 247
AfaI GTAC 2 cut(s) 6, 214
AgsI TTSAA 2 cut(s) 153, 203
AjnI CCWGG 2 cut(s) 61, 255
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw21I GWGCWC 1 cut(s) 287
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 1 cut(s) 205
BccI CCATC 3 cut(s) 121, 249, 303
BciT130I CCWGG 2 cut(s) 63, 257
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 63, 257
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 2 cut(s) 63, 257
BmsI GCATC 1 cut(s) 118
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 63, 257
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 108, 359
BseXI GCAGC 1 cut(s) 205
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 287
BslFI GGGAC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 43, 287
Bsp143I GATC 1 cut(s) 252
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 109, 358
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 63, 257
Bst6I CTCTTC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 3 cut(s) 105, 117, 345
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstNI CCWGG 2 cut(s) 63, 257
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 61, 255
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 5, 213
CviAII CATG 3 cut(s) 125, 293, 301
CviJI RGCY 7 cut(s) 41, 60, 66, 131, 260, 320, 349
CviKI_1 RGCY 7 cut(s) 41, 60, 66, 131, 260, 320, 349
CviQI GTAC 2 cut(s) 5, 213
DdeI CTNAG 3 cut(s) 105, 117, 345
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco24I GRGCYC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 61, 255
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 3 cut(s) 128, 296, 304
FaqI GGGAC 1 cut(s) 106
FatI CATG 3 cut(s) 124, 292, 300
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 3 cut(s) 128, 296, 304
HinfI GANTC 5 cut(s) 80, 119, 176, 199, 341
Hpy188I TCNGA 4 cut(s) 55, 118, 136, 193
Hpy188III TCNNGA 2 cut(s) 153, 180
HpyAV CCTTC 1 cut(s) 278
HpyCH4V TGCA 2 cut(s) 236, 304
HpyF3I CTNAG 3 cut(s) 105, 117, 345
Hsp92II CATG 3 cut(s) 128, 296, 304
Kzo9I GATC 1 cut(s) 252
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 6 cut(s) 48, 75, 165, 230, 242, 269
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 118
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 292
MfeI CAATTG 1 cut(s) 336
MhlI GDGCHC 2 cut(s) 43, 287
MluCI AATT 2 cut(s) 273, 336
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 4 cut(s) 61, 78, 121, 325
MspR9I CCNGG 2 cut(s) 63, 257
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 2 cut(s) 63, 257
NdeII GATC 1 cut(s) 252
NlaIII CATG 3 cut(s) 128, 296, 304
NlaIV GGNNCC 1 cut(s) 321
NspI RCATGY 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 275
PfeI GAWTC 4 cut(s) 80, 176, 199, 341
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 61, 255
PspGI CCWGG 2 cut(s) 61, 255
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 65
RsaI GTAC 2 cut(s) 6, 214
RsaNI GTAC 2 cut(s) 5, 213
SapI GCTCTTC 1 cut(s) 275
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 2 cut(s) 63, 257
SduI GDGCHC 2 cut(s) 43, 287
SetI ASST 1 cut(s) 351
SfaNI GCATC 1 cut(s) 118
Sse9I AATT 2 cut(s) 273, 336
StyD4I CCNGG 2 cut(s) 61, 255
TaqI TCGA 1 cut(s) 330
TasI AATT 2 cut(s) 273, 336
TfiI GAWTC 4 cut(s) 80, 176, 199, 341
TscAI CASTG 1 cut(s) 255
TseI GCWGC 1 cut(s) 218
TspRI CASTG 1 cut(s) 255
XceI RCATGY 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.