Rroxscaffold_4G00328090

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000877
Physical Location & Seq
Forward (+)
60968681 .. 60979404
10724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328090.1

Sequence Viewer

Length: 2523 bp
ATGTCTGAACCGTCACCGGACCTCGCTATCCTCCGCGGCTACGAGCTCCGTCTCCTCCGCTGCACCTTCCTCTCTCCTCCTCCGCCGTCCGATCCTGAACAACCGTCCGATCAAACCTCGCCCACTCACCCCCTCTCCCCTCTAATCTCCGCCCTCCTCACTTCCATCGAGTCCGGCCGATACCTCGAAGCCCTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAACTCACCGATTCCGACTCGCTCGGCGACCACGACGCCGACCGAGTCTACTCCGAGTTGCTCCGCCGCGTAGAGTCGTTCATATGCGAAGAAGCTGAGGATAATGGCAAGTATCAGGCCTATAGAGTCGTCGTCGTGCTCTGCATTGCCGTAGCTGCGTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTGTGGAGGGGCTGCCAAGGTGTCCGTTGCCGATGGCAGTGCCCTTATGTGATGAGTGGGACAATTGGGCTCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCGCTAGGGTCACCTTTCTCCATCAGCACATTCTCGATGAGCGATCTTCATCTCTGTTCGACCTTTTGCATGTCTTTACAAGTGAAACTTTGAATCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACAGTTGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCATGCAGGTTGTATTTTGAATCAGCTGAAGCAGCAGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGGTTGAACCAAAGGCACAAATGGTACTTTTAGCAAACACAACTTCATCAAAGAGTAGGGTTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATTGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGGTTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGAAACTTTGAGTGCAATCCAGCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACACGACATGATGACATGCAGAGATGGGAAATGGCTCCATATATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTGTTCAGGGCATCAACGATCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGATCTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCCTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAGTTCGTTCCTTCTCCATTAATAAAACTGTCAATCACTCTCTCTCTCCCCCCCCCCCCCGGCTCCCCCCAAATCATTACTTCATTTTATTTATTGACACTTTCTATGCCTGGTGACAGACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGCTCTAGAAGCTGCACGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCATCAATGACTGATGATGAAGATAACTTTCTCGTTTGTGGGACCACAAATGCAGCATCTGAGGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTCTACAACAGATAGTTCGGAGTGGAAATGGAACAGATATTTGGGGCTTGTATGCTAGATGGCAAAAAATGAAAGGAGACCTCTCAATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGATCTGATTTGTGGAAAGATAGAGATCGGTTTAAAAAGTTTGCGAAATCATCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCATCTACTGGCAGCCGTGATGAACTTCTCTCAGCTGAAAGGCACCTAAGGAACATAATGAAACAGGCAAGATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

840

Amino Acids

93.6

Weight (kDa)

5.35

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 867
AccB1I GGYRCC 1 cut(s) 2487
AccBSI CCGCTC 1 cut(s) 1152
AccI GTMKAC 1 cut(s) 273
AccII CGCG 2 cut(s) 36, 294
AclWI GGATC 7 cut(s) 86, 811, 1225, 1355, 1724, 2043, 2368
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 2 cut(s) 1488, 1627
AcuI CTGAAG 2 cut(s) 918, 1844
AcvI CACGTG 1 cut(s) 863
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 3 cut(s) 949, 984, 1192
AfiI CCNNNNNNNGG 4 cut(s) 425, 1370, 1739, 1889
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 8 cut(s) 226, 599, 739, 890, 965, 1181, 1627, 1831
AjnI CCWGG 6 cut(s) 1039, 1233, 1369, 1604, 1939, 2355
AjuI GAANNNNNNNTTGG 4 cut(s) 2254, 2286, 2396, 2428
AloI GAACNNNNNNTCC 2 cut(s) 1440, 1472
Alw21I GWGCWC 4 cut(s) 48, 366, 1265, 2208
Alw26I GTCTC 3 cut(s) 56, 820, 2301
AlwI GGATC 7 cut(s) 86, 811, 1225, 1355, 1724, 2043, 2368
AlwNI CAGNNNCTG 3 cut(s) 908, 1559, 2177
Ama87I CYCGRG 1 cut(s) 2193
AoxI GGCC 4 cut(s) 175, 342, 1042, 1620
ApoI RAATTY 2 cut(s) 1488, 1627
AseI ATTAAT 1 cut(s) 1850
AspA2I CCTAGG 1 cut(s) 1657
AspS9I GGNCC 4 cut(s) 19, 416, 1043, 2160
AsuC2I CCSGG 1 cut(s) 1890
AsuHPI GGTGA 8 cut(s) 6, 119, 187, 223, 649, 1457, 1955, 2100
AvaI CYCGRG 1 cut(s) 2193
AvaII GGWCC 3 cut(s) 19, 416, 2160
AvrII CCTAGG 1 cut(s) 1657
AxyI CCTNAGG 1 cut(s) 2492
BaeGI GKGCMC 1 cut(s) 462
BanI GGYRCC 1 cut(s) 2487
BanII GRGCYC 2 cut(s) 48, 490
BbrPI CACGTG 1 cut(s) 863
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 4 cut(s) 48, 366, 1265, 2208
BbvCI CCTCAGC 1 cut(s) 321
BccI CCATC 9 cut(s) 173, 445, 675, 838, 1099, 1281, 1637, 1697, 2283
BceAI ACGGC 5 cut(s) 70, 359, 1189, 1595, 2445
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 6 cut(s) 1041, 1235, 1371, 1606, 1941, 2357
BciVI GTATCC 1 cut(s) 1647
BclI TGATCA 1 cut(s) 1569
BcnI CCSGG 1 cut(s) 1890
BcoDI GTCTC 3 cut(s) 56, 820, 2301
BfaI CTAG 6 cut(s) 651, 1658, 1700, 2012, 2286, 2521
BfmI CTRYAG 4 cut(s) 346, 1416, 1531, 1978
BfuAI ACCTGC 1 cut(s) 867
BfuI GTATCC 1 cut(s) 1647
BglI GCCNNNNNGGC 1 cut(s) 1661
BlnI CCTAGG 1 cut(s) 1657
BlpI GCTNAGC 1 cut(s) 2202
Bme1390I CCNGG 7 cut(s) 1041, 1235, 1371, 1606, 1890, 1941, 2357
Bme18I GGWCC 3 cut(s) 19, 416, 2160
BmeT110I CYCGRG 1 cut(s) 2193
BmgT120I GGNCC 4 cut(s) 19, 416, 1043, 2160
BmiI GGNNCC 5 cut(s) 632, 1299, 1894, 2161, 2489
BmrFI CCNGG 7 cut(s) 1041, 1235, 1371, 1606, 1890, 1941, 2357
BmsI GCATC 4 cut(s) 1096, 1362, 2050, 2183
BoxI GACNNNNGTC 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 214
BpmI CTGGAG 2 cut(s) 1179, 1353
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 2202
BpuMI CCSGG 1 cut(s) 1890
BsaAI YACGTR 1 cut(s) 863
BsaBI GATNNNNATC 3 cut(s) 694, 1409, 2382
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 2301
BsaWI WCCGGW 2 cut(s) 16, 413
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 1467, 1497
Bsc4I CCNNNNNNNGG 4 cut(s) 425, 1370, 1739, 1889
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 2458
Bse21I CCTNAGG 1 cut(s) 2492
Bse3DI GCAATG 4 cut(s) 369, 1623, 1803, 2011
Bse8I GATNNNNATC 3 cut(s) 694, 1409, 2382
BseBI CCWGG 6 cut(s) 1041, 1235, 1371, 1606, 1941, 2357
BseGI GGATG 2 cut(s) 1087, 2408
BseJI GATNNNNATC 3 cut(s) 694, 1409, 2382
BseLI CCNNNNNNNGG 4 cut(s) 425, 1370, 1739, 1889
BseMI GCAATG 4 cut(s) 369, 1623, 1803, 2011
BseMII CTCAG 9 cut(s) 312, 413, 831, 1086, 1337, 2055, 2169, 2193, 2490
BseNI ACTGG 1 cut(s) 2458
BseRI GAGGAG 4 cut(s) 44, 66, 69, 146
BseSI GKGCMC 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 175
BsgI GTGCAG 3 cut(s) 46, 2004, 2341
Bsh1236I CGCG 2 cut(s) 36, 294
Bsh1285I CGRYCG 2 cut(s) 178, 268
BshFI GGCC 4 cut(s) 177, 344, 1044, 1622
BshNI GGYRCC 1 cut(s) 2487
BsiEI CGRYCG 2 cut(s) 178, 268
BsiHKAI GWGCWC 4 cut(s) 48, 366, 1265, 2208
BsiHKCI CYCGRG 1 cut(s) 2193
BsiSI CCGG 5 cut(s) 17, 174, 214, 414, 1890
BslFI GGGAC 3 cut(s) 491, 1084, 2173
BslI CCNNNNNNNGG 4 cut(s) 425, 1370, 1739, 1889
BsmAI GTCTC 3 cut(s) 56, 820, 2301
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 3 cut(s) 491, 1084, 2173
BsmI GAATGC 1 cut(s) 1176
BsnI GGCC 4 cut(s) 177, 344, 1044, 1622
Bso31I GGTCTC 1 cut(s) 2301
BsoBI CYCGRG 1 cut(s) 2193
Bsp1286I GDGCHC 6 cut(s) 48, 366, 462, 490, 1265, 2208
Bsp1720I GCTNAGC 1 cut(s) 2202
BspANI GGCC 4 cut(s) 177, 344, 1044, 1622
BspCNI CTCAG 9 cut(s) 313, 412, 830, 1087, 1336, 2056, 2170, 2194, 2489
BspFNI CGCG 2 cut(s) 36, 294
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 5 cut(s) 632, 1299, 1894, 2161, 2489
BspMI ACCTGC 1 cut(s) 867
BspPI GGATC 7 cut(s) 86, 811, 1225, 1355, 1724, 2043, 2368
BspQI GCTCTTC 1 cut(s) 1253
BspT107I GGYRCC 1 cut(s) 2487
BspTNI GGTCTC 1 cut(s) 2301
BsrBI CCGCTC 1 cut(s) 1152
BsrDI GCAATG 4 cut(s) 369, 1623, 1803, 2011
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 1 cut(s) 2458
BssAI RCCGGY 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 4 cut(s) 434, 1657, 2221, 2412
Bst2UI CCWGG 6 cut(s) 1041, 1235, 1371, 1606, 1941, 2357
Bst4CI ACNGT 7 cut(s) 12, 105, 811, 1420, 1445, 1860, 1968
Bst6I CTCTTC 2 cut(s) 1253, 1781
BstACI GRCGYC 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 863
BstC8I GCNNGC 3 cut(s) 511, 648, 1224
BstDSI CCRYGG 1 cut(s) 34
BstEII GGTNACC 1 cut(s) 655
BstF5I GGATG 2 cut(s) 1087, 2408
BstFNI CGCG 2 cut(s) 36, 294
BstMAI GTCTC 3 cut(s) 56, 820, 2301
BstMCI CGRYCG 2 cut(s) 178, 268
BstMWI GCNNNNNNNGC 6 cut(s) 380, 389, 902, 1661, 1805, 2015
BstNI CCWGG 6 cut(s) 1041, 1235, 1371, 1606, 1941, 2357
BstNSI RCATGY 2 cut(s) 719, 1282
BstPAI GACNNNNGTC 1 cut(s) 812
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 7 cut(s) 1039, 1233, 1369, 1604, 1888, 1939, 2355
BstSFI CTRYAG 4 cut(s) 346, 1416, 1531, 1978
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 2 cut(s) 36, 294
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 2035, 2360
BstYI RGATCY 2 cut(s) 2035, 2360
BstZI CGGCCG 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 2492
BsuI GTATCC 1 cut(s) 1647
BsuRI GGCC 4 cut(s) 177, 344, 1044, 1622
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 2 cut(s) 1087, 2408
BtsI GCAGTG 2 cut(s) 462, 1233
BtsIMutI CAGTG 4 cut(s) 462, 825, 1233, 1820
BveI ACCTGC 1 cut(s) 867
Cac8I GCNNGC 3 cut(s) 511, 648, 1224
CaiI CAGNNNCTG 3 cut(s) 908, 1559, 2177
CciI TCATGA 1 cut(s) 573
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 4 cut(s) 19, 416, 1043, 2160
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 2 cut(s) 215, 269
Csp6I GTAC 3 cut(s) 948, 983, 1191
CviQI GTAC 3 cut(s) 948, 983, 1191
DraI TTTAAA 1 cut(s) 2392
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 1253, 1781
EarI CTCTTC 2 cut(s) 1253, 1781
EciI GGCGGA 4 cut(s) 72, 139, 190, 278
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 4 cut(s) 434, 1657, 2221, 2412
Eco147I AGGCCT 1 cut(s) 344
Eco24I GRGCYC 2 cut(s) 48, 490
Eco31I GGTCTC 1 cut(s) 2301
Eco47I GGWCC 3 cut(s) 19, 416, 2160
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 918, 1844
Eco72I CACGTG 1 cut(s) 863
Eco81I CCTNAGG 1 cut(s) 2492
Eco88I CYCGRG 1 cut(s) 2193
Eco91I GGTNACC 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 1627
EcoRII CCWGG 6 cut(s) 1039, 1233, 1369, 1604, 1939, 2355
EcoT14I CCWWGG 4 cut(s) 434, 1657, 2221, 2412
EcoT38I GRGCYC 2 cut(s) 48, 490
ErhI CCWWGG 4 cut(s) 434, 1657, 2221, 2412
Esp3I CGTCTC 1 cut(s) 56
FalI AAGNNNNNCTT 6 cut(s) 595, 627, 718, 750, 2089, 2121
FaqI GGGAC 3 cut(s) 491, 1084, 2173
FauNDI CATATG 3 cut(s) 308, 619, 1773
FbaI TGATCA 1 cut(s) 1569
FblI GTMKAC 1 cut(s) 273
FokI GGATG 2 cut(s) 1074, 2395
FriOI GRGCYC 2 cut(s) 48, 490
FspBI CTAG 6 cut(s) 651, 1658, 1700, 2012, 2286, 2521
GsuI CTGGAG 2 cut(s) 1179, 1353
HaeIII GGCC 4 cut(s) 177, 344, 1044, 1622
HapII CCGG 5 cut(s) 17, 174, 214, 414, 1890
HgaI GACGC 2 cut(s) 215, 269
Hin1I GRCGYC 1 cut(s) 261
HindIII AAGCTT 3 cut(s) 917, 1797, 2328
HpaII CCGG 5 cut(s) 17, 174, 214, 414, 1890
HphI GGTGA 8 cut(s) 6, 119, 187, 223, 649, 1457, 1955, 2100
Hpy166II GTNNAC 2 cut(s) 274, 1448
Hpy8I GTNNAC 2 cut(s) 274, 1448
Hpy99I CGWCG 4 cut(s) 209, 263, 359, 362
HpyAV CCTTC 7 cut(s) 76, 593, 1256, 1429, 1687, 1851, 2020
HpyCH4III ACNGT 7 cut(s) 12, 105, 811, 1420, 1445, 1860, 1968
HpyCH4IV ACGT 2 cut(s) 752, 862
HpyF10VI GCNNNNNNNGC 6 cut(s) 380, 389, 902, 1661, 1805, 2015
HpySE526I ACGT 2 cut(s) 752, 862
Hsp92I GRCGYC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 1569
KspI CCGCGG 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 1253
LmnI GCTCC 5 cut(s) 51, 291, 630, 1303, 1898
LweI GCATC 4 cut(s) 1096, 1362, 2050, 2183
MaeI CTAG 6 cut(s) 651, 1658, 1700, 2012, 2286, 2521
MaeII ACGT 2 cut(s) 752, 862
MaeIII GTNAC 7 cut(s) 12, 384, 655, 763, 779, 925, 1943
MbiI CCGCTC 1 cut(s) 1152
MboII GAAGA 8 cut(s) 214, 326, 589, 684, 1270, 1798, 2150, 2436
MfeI CAATTG 2 cut(s) 481, 1314
MflI RGATCY 2 cut(s) 2035, 2360
MhlI GDGCHC 6 cut(s) 48, 366, 462, 490, 1265, 2208
MlyI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1619
MmeI TCCRAC 3 cut(s) 264, 735, 2013
MseI TTAA 5 cut(s) 915, 1673, 1850, 2336, 2391
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 7 cut(s) 36, 60, 896, 908, 1461, 1559, 2480
MspI CCGG 5 cut(s) 17, 174, 214, 414, 1890
MspR9I CCNGG 7 cut(s) 1041, 1235, 1371, 1606, 1890, 1941, 2357
MunI CAATTG 2 cut(s) 481, 1314
Mva1269I GAATGC 1 cut(s) 1176
MvaI CCWGG 6 cut(s) 1041, 1235, 1371, 1606, 1941, 2357
MvnI CGCG 2 cut(s) 36, 294
MwoI GCNNNNNNNGC 6 cut(s) 380, 389, 902, 1661, 1805, 2015
NciI CCSGG 1 cut(s) 1890
NdeI CATATG 3 cut(s) 308, 619, 1773
NlaIV GGNNCC 5 cut(s) 632, 1299, 1894, 2161, 2489
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 3 cut(s) 12, 655, 1943
NspI RCATGY 2 cut(s) 719, 1282
PagI TCATGA 1 cut(s) 573
PasI CCCWGGG 1 cut(s) 1605
PceI AGGCCT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 1176
PfeI GAWTC 9 cut(s) 236, 493, 739, 823, 869, 890, 1058, 1319, 1387
PflFI GACNNNGTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 1369
PleI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1618
PmaCI CACGTG 1 cut(s) 863
PmlI CACGTG 1 cut(s) 863
PpsI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1618
Ppu21I YACGTR 1 cut(s) 863
PshAI GACNNNNGTC 1 cut(s) 812
PshBI ATTAAT 1 cut(s) 1850
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 6 cut(s) 1039, 1233, 1369, 1604, 1939, 2355
PspCI CACGTG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 655
PspGI CCWGG 6 cut(s) 1039, 1233, 1369, 1604, 1939, 2355
PspN4I GGNNCC 5 cut(s) 632, 1299, 1894, 2161, 2489
PspPI GGNCC 4 cut(s) 19, 416, 1043, 2160
PstNI CAGNNNCTG 3 cut(s) 908, 1559, 2177
PsuI RGATCY 2 cut(s) 2035, 2360
PsyI GACNNNGTC 1 cut(s) 269
PvuII CAGCTG 4 cut(s) 896, 908, 1559, 2480
RsaI GTAC 3 cut(s) 949, 984, 1192
RsaNI GTAC 3 cut(s) 948, 983, 1191
RseI CAYNNNNRTG 1 cut(s) 578
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 1253
SaqAI TTAA 5 cut(s) 915, 1673, 1850, 2336, 2391
Sau96I GGNCC 4 cut(s) 19, 416, 1043, 2160
SchI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1619
ScrFI CCNGG 7 cut(s) 1041, 1235, 1371, 1606, 1890, 1941, 2357
SduI GDGCHC 6 cut(s) 48, 366, 462, 490, 1265, 2208
SfaNI GCATC 4 cut(s) 1096, 1362, 2050, 2183
SfcI CTRYAG 4 cut(s) 346, 1416, 1531, 1978
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 19, 416, 2160
SmiMI CAYNNNNRTG 1 cut(s) 578
SseBI AGGCCT 1 cut(s) 344
SspI AATATT 3 cut(s) 541, 1524, 1759
SspMI CTAG 6 cut(s) 651, 1658, 1700, 2012, 2286, 2521
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 7 cut(s) 1039, 1233, 1369, 1604, 1888, 1939, 2355
StyI CCWWGG 4 cut(s) 434, 1657, 2221, 2412
TaaI ACNGT 7 cut(s) 12, 105, 811, 1420, 1445, 1860, 1968
TaiI ACGT 2 cut(s) 755, 865
TaqI TCGA 6 cut(s) 168, 186, 681, 705, 806, 1308
TaqII GACCGA 1 cut(s) 282
TauI GCSGC 2 cut(s) 39, 294
TfiI GAWTC 9 cut(s) 236, 493, 739, 823, 869, 890, 1058, 1319, 1387
Tru1I TTAA 5 cut(s) 915, 1673, 1850, 2336, 2391
Tru9I TTAA 5 cut(s) 915, 1673, 1850, 2336, 2391
TscAI CASTG 4 cut(s) 462, 825, 1233, 1827
TseFI GTSAC 3 cut(s) 12, 655, 1943
Tsp45I GTSAC 3 cut(s) 12, 655, 1943
TspGWI ACGGA 4 cut(s) 38, 432, 935, 2038
TspRI CASTG 4 cut(s) 462, 825, 1233, 1827
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 19, 416, 2160
VspI ATTAAT 1 cut(s) 1850
XapI RAATTY 2 cut(s) 1488, 1627
XbaI TCTAGA 1 cut(s) 2011
XceI RCATGY 2 cut(s) 719, 1282
XmaJI CCTAGG 1 cut(s) 1657
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 6 cut(s) 651, 1658, 1700, 2012, 2286, 2521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.