Rw1G003620

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000877
Physical Location & Seq
Reverse (-)
6737948 .. 6744105
6158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003620.1

Sequence Viewer

Length: 876 bp
ATGGCACAAGTCCAGCACAAAATTTTGCTATTAGGGGTTCTTGGCTTCCGTACTATACATCAGGTCGAACCAAAGGCACAAATGGTACTTTTATCAAACACAACATCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTTCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGGATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTTGGTGGGAGTCGACACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATTGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTGTGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACAGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAAGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTAAAAAAGCCCTAGAAGTTTCAAACGATAAGTCGGCTCGGGCTAAGTTATTATTTTTTATTTATTATATATGTATATATGCTATCATGTATCACAATGAATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

291

Amino Acids

32.71

Weight (kDa)

5.74

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 488
AccII CGCG 1 cut(s) 370
AciI CCGC 2 cut(s) 625, 652
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 21, 681
AfaI GTAC 3 cut(s) 52, 87, 295
AfiI CCNNNNNNNGG 1 cut(s) 563
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 3 cut(s) 234, 284, 789
AhdI GACNNNNNGTC 1 cut(s) 495
AjnI CCWGG 3 cut(s) 142, 336, 562
AloI GAACNNNNNNTCC 2 cut(s) 633, 665
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
Alw21I GWGCWC 1 cut(s) 368
AlwI GGATC 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 804
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 21, 681
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 752
AvaI CYCGRG 1 cut(s) 804
BanII GRGCYC 2 cut(s) 124, 558
Bbv12I GWGCWC 1 cut(s) 368
BbvI GCAGC 1 cut(s) 286
BccI CCATC 4 cut(s) 202, 330, 384, 520
BciT130I CCWGG 3 cut(s) 144, 338, 564
BfaI CTAG 1 cut(s) 779
BfmI CTRYAG 1 cut(s) 609
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 3 cut(s) 144, 338, 564
BmeRI GACNNNNNGTC 1 cut(s) 495
BmeT110I CYCGRG 1 cut(s) 804
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 402, 555
BmrFI CCNGG 3 cut(s) 144, 338, 564
BmsI GCATC 3 cut(s) 199, 446, 748
BplI GAGNNNNNCTC 2 cut(s) 106, 138
BpmI CTGGAG 2 cut(s) 282, 546
BsaAI YACGTR 2 cut(s) 473, 494
BsaBI GATNNNNATC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse8I GATNNNNATC 1 cut(s) 602
BseBI CCWGG 3 cut(s) 144, 338, 564
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 602
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 2 cut(s) 189, 440
BseXI GCAGC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 804
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 563
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 804
Bsp1286I GDGCHC 3 cut(s) 124, 368, 558
Bsp143I GATC 1 cut(s) 333
BspACI CCGC 2 cut(s) 625, 652
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 190, 439
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 402, 555
BspPI GGATC 1 cut(s) 328
BspQI GCTCTTC 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 333
Bst2UI CCWGG 3 cut(s) 144, 338, 564
Bst4CI ACNGT 2 cut(s) 613, 638
Bst6I CTCTTC 1 cut(s) 356
BstBAI YACGTR 2 cut(s) 473, 494
BstC8I GCNNGC 2 cut(s) 368, 763
BstDEI CTNAG 4 cut(s) 186, 198, 426, 810
BstF5I GGATG 1 cut(s) 190
BstFNI CGCG 1 cut(s) 370
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstNI CCWGG 3 cut(s) 144, 338, 564
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 3 cut(s) 142, 336, 562
BstSFI CTRYAG 1 cut(s) 609
BstSNI TACGTA 1 cut(s) 473
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 336, 643
Cac8I GCNNGC 2 cut(s) 368, 763
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 51, 86, 294
CviAII CATG 4 cut(s) 206, 374, 382, 853
CviQI GTAC 3 cut(s) 51, 86, 294
DdeI CTNAG 4 cut(s) 186, 198, 426, 810
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
DraI TTTAAA 1 cut(s) 769
DriI GACNNNNNGTC 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 356
Eam1105I GACNNNNNGTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 356
Eco105I TACGTA 1 cut(s) 473
Eco24I GRGCYC 2 cut(s) 124, 558
Eco88I CYCGRG 1 cut(s) 804
EcoRII CCWGG 3 cut(s) 142, 336, 562
EcoT38I GRGCYC 2 cut(s) 124, 558
FaeI CATG 4 cut(s) 209, 377, 385, 856
FaqI GGGAC 1 cut(s) 187
FatI CATG 4 cut(s) 205, 373, 381, 852
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 177
FriOI GRGCYC 2 cut(s) 124, 558
Fsp4HI GCNGC 1 cut(s) 300
FspBI CTAG 1 cut(s) 779
GluI GCNGC 1 cut(s) 300
GsuI CTGGAG 2 cut(s) 282, 546
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 4 cut(s) 209, 377, 385, 856
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 7 cut(s) 161, 200, 257, 280, 422, 485, 580
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 2 cut(s) 489, 641
Hpy188I TCNGA 6 cut(s) 136, 199, 217, 274, 663, 714
Hpy188III TCNNGA 2 cut(s) 234, 261
Hpy8I GTNNAC 2 cut(s) 489, 641
Hpy99I CGWCG 1 cut(s) 456
HpyAV CCTTC 2 cut(s) 359, 622
HpyCH4III ACNGT 2 cut(s) 613, 638
HpyCH4IV ACGT 4 cut(s) 472, 493, 511, 744
HpyCH4V TGCA 3 cut(s) 317, 385, 515
HpyF3I CTNAG 4 cut(s) 186, 198, 426, 810
HpySE526I ACGT 4 cut(s) 472, 493, 511, 744
Hsp92II CATG 4 cut(s) 209, 377, 385, 856
Kzo9I GATC 1 cut(s) 333
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 2 cut(s) 406, 553
Lsp1109I GCAGC 1 cut(s) 286
LweI GCATC 3 cut(s) 199, 446, 748
MaeI CTAG 1 cut(s) 779
MaeII ACGT 4 cut(s) 472, 493, 511, 744
MaeIII GTNAC 3 cut(s) 497, 740, 745
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 1 cut(s) 373
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 3 cut(s) 124, 368, 558
MluCI AATT 5 cut(s) 21, 354, 417, 681, 698
MlyI GAGTC 2 cut(s) 209, 494
MnlI CCTC 7 cut(s) 142, 159, 202, 406, 568, 664, 682
MseI TTAA 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 654
MspR9I CCNGG 3 cut(s) 144, 338, 564
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 3 cut(s) 144, 338, 564
MvnI CGCG 1 cut(s) 370
NdeII GATC 1 cut(s) 333
NlaIII CATG 4 cut(s) 209, 377, 385, 856
NlaIV GGNNCC 2 cut(s) 402, 555
NmuCI GTSAC 2 cut(s) 497, 740
NspI RCATGY 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 356
PfeI GAWTC 5 cut(s) 161, 257, 280, 422, 580
PfoI TCCNGGA 1 cut(s) 562
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 2 cut(s) 208, 493
PpsI GAGTC 2 cut(s) 208, 493
Ppu21I YACGTR 2 cut(s) 473, 494
Psp6I CCWGG 3 cut(s) 142, 336, 562
PspGI CCWGG 3 cut(s) 142, 336, 562
PspN4I GGNNCC 2 cut(s) 402, 555
PspPI GGNCC 1 cut(s) 146
RsaI GTAC 3 cut(s) 52, 87, 295
RsaNI GTAC 3 cut(s) 51, 86, 294
SalI GTCGAC 1 cut(s) 487
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 768
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 209, 494
ScrFI CCNGG 3 cut(s) 144, 338, 564
SduI GDGCHC 3 cut(s) 124, 368, 558
SetI ASST 6 cut(s) 66, 432, 475, 496, 514, 747
SfaNI GCATC 3 cut(s) 199, 446, 748
SfcI CTRYAG 1 cut(s) 609
SnaBI TACGTA 1 cut(s) 473
Sse9I AATT 5 cut(s) 21, 354, 417, 681, 698
SsiI CCGC 2 cut(s) 625, 652
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 3 cut(s) 142, 336, 562
TaaI ACNGT 2 cut(s) 613, 638
TaiI ACGT 4 cut(s) 475, 496, 514, 747
TaqI TCGA 3 cut(s) 66, 411, 488
TasI AATT 5 cut(s) 21, 354, 417, 681, 698
TfiI GAWTC 5 cut(s) 161, 257, 280, 422, 580
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 2 cut(s) 336, 643
TseFI GTSAC 2 cut(s) 497, 740
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 2 cut(s) 497, 740
TspDTI ATGAA 1 cut(s) 723
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 2 cut(s) 336, 643
XapI RAATTY 2 cut(s) 21, 681
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.