Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004820.1

Orthogroup ID

OG0000877

Physical Location & Seq

Genomic Coordinates Forward (+)

49505 .. 54009

Gene Structure 4505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004820.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atggtaaagaggaacggtgataaggggtcaccttgccttaatccccaggaggcaccaaattttcctcttggtctcccatttatcaatatagagaaatttgttgacctcagacatccccctacccattttctccatctatctccaaagcctttactctccataactgcttggggtgatattgttccagctctagtggttcagggtatcaaggagccctctccaggagtggcagacaggattcctttctgctatgggatttatatccctacagtttcagccttgcggaatgcttcttgttattttttctcgttccatttttgggaatacggtgaactttgtgtccgctgtggtctgataggagaggcagtcaaaatttttgaggacttggaattatgggataatctaatattctgctataggtgttcattgggtgacgttactaatgatgatgcctgctttgaaaaagccctagaagtttcaaacgataggtcggctcgggctaagaggtctcttgcacgcagtgcatacaacaggggacaatatagaacatcaaaacttctgtgggagtctgcaatggccttgaattctctgtatcctgatggctggtttgccctaggggctgctgcattaaaggatatggatattgagaaggcactagatggctttacacgggctgttcagcttgatcctgaaaatggggaggcatggaataatattgcctgtttgcatgtgataaaagggaagagtaaggaagctttcattgcatttagagaagcactgaagttcaagctcgttccttctccattaataaaactacgaaacagctatcaactgtgggagaactacagccatgttgctttagatgttggcaatgttgctcaggctctagaagctgcacggaaggtgttggatcttactaataataagagaattgatgctgagttattggaaagaattatgacagaggtggaaagcatggcttcacctactaattcatcaatgactgatgatgaagataactttctcgttagtgggaccacaaatgcagcatctgaggtgggaaaatctcgggaagctgagcacttagtagagttccttggaaaaagttatacaacagatagttcggagtggaaatggaacagatatttgaggcttgtatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

387

Amino Acids

43.48

Weight (kDa)

5.64

Isoelectric Point (pI)

35.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17270 AT5G17270 AT5G37130
fragaria_vesca	FvH4_7g02460
malus_domestica	MD10G1031900.v1.1
prunus_persica	Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1
pyrus_communis	pycom10g02020
rosa_chinensis	RchiOBHm_Chr1g0319751 RchiOBHm_Chr1g0319761 RchiOBHm_Chr1g0319801 RchiOBHm_Chr1g0319811 RchiOBHm_Chr1g0319861 RchiOBHm_Chr1g0320041 RchiOBHm_Chr1g0320601 RchiOBHm_Chr1g0320761 RchiOBHm_Chr1g0320781 RchiOBHm_Chr1g0320901 RchiOBHm_Chr1g0320911 RchiOBHm_Chr1g0321111
rosa_laevigata	RLG00000030451 RLG00000030455 RLG00000030458
rosa_multiflora	Rmu_sc0001512.1_g000008 Rmu_sc0001722.1_g000001 Rmu_sc0002745.1_g000001 Rmu_sc0002745.1_g000003 Rmu_sc0003446.1_g000001 Rmu_sc0004660.1_g000001 Rmu_sc0004660.1_g000005 Rmu_sc0004820.1_g000017 Rmu_sc0004820.1_g000018 Rmu_sc0007977.1_g000013
rosa_roxburghii	Rroxscaffold_160G00433640 Rroxscaffold_160G00433720 Rroxscaffold_2G00104290 Rroxscaffold_4G00328090 Rroxscaffold_4G00328120
rosa_rugosa	Rorug01G0030000 Rorug01G0030900 Rorug01G0055500
rosa_samantha	Rh1AG042000 Rh1AG043000 Rh1BG039700 Rh1CG043000 Rh1CG044900 Rh1CG045000 Rh1CG045100 Rh1DG022800 Rh1DG026100 Rh1DG047800 Rh1DG048100 Rh1DG048200 Rh1DG048900 Rh1DG049000 Rh1DG049400 Rh1DG049500 Rh1DG049700
rosa_wichuraiana	Rw0G001090 Rw0G001120 Rw1G003620 Rw1G003650 Rw1G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AciI	CCGC	2 cut(s)	283, 343
AclWI	GGATC	2 cut(s)	680, 918
AcsI	RAATTY	4 cut(s)	58, 95, 372, 583
AcuI	CTGAAG	1 cut(s)	800
AdeI	CACNNNGTG	1 cut(s)	521
AfiI	CCNNNNNNNGG	3 cut(s)	221, 319, 695
AgsI	TTSAA	4 cut(s)	461, 480, 583, 787
AjnI	CCWGG	2 cut(s)	45, 220
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	7 cut(s)	188, 682, 755, 790, 825, 893, 1076
AluI	AGCT	7 cut(s)	188, 682, 755, 790, 825, 893, 1076
Alw21I	GWGCWC	1 cut(s)	1083
Alw26I	GTCTC	2 cut(s)	77, 513
AlwI	GGATC	2 cut(s)	680, 918
AlwNI	CAGNNNCTG	1 cut(s)	1052
Ama87I	CYCGRG	2 cut(s)	495, 1068
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	4 cut(s)	620, 623, 893, 1046
ApoI	RAATTY	4 cut(s)	58, 95, 372, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AseI	ATTAAT	1 cut(s)	806
AspA2I	CCTAGG	1 cut(s)	613
AspS9I	GGNCC	1 cut(s)	1035
AsuHPI	GGTGA	6 cut(s)	21, 29, 185, 341, 443, 975
AvaI	CYCGRG	2 cut(s)	495, 1068
AvaII	GGWCC	1 cut(s)	1035
AvrII	CCTAGG	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	1083
BbvI	GCAGC	4 cut(s)	607, 610, 880, 1058
BccI	CCATC	3 cut(s)	141, 593, 653
BciT130I	CCWGG	2 cut(s)	47, 222
BciVI	GTATCC	1 cut(s)	603
BcoDI	GTCTC	2 cut(s)	77, 513
BfaI	CTAG	6 cut(s)	191, 470, 614, 656, 887, 1162
BfmI	CTRYAG	3 cut(s)	267, 415, 844
BfuI	GTATCC	1 cut(s)	603
BglI	GCCNNNNNGGC	1 cut(s)	617
BisI	GCNGC	4 cut(s)	621, 624, 894, 1047
BlnI	CCTAGG	1 cut(s)	613
BlpI	GCTNAGC	1 cut(s)	1077
BlsI	GCNGC	4 cut(s)	622, 625, 895, 1048
Bme1390I	CCNGG	2 cut(s)	47, 222
Bme18I	GGWCC	1 cut(s)	1035
BmeT110I	CYCGRG	2 cut(s)	495, 1068
BmgT120I	GGNCC	1 cut(s)	1035
BmiI	GGNNCC	3 cut(s)	54, 213, 1036
BmrFI	CCNGG	2 cut(s)	47, 222
BmsI	GCATC	3 cut(s)	439, 925, 1058
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	879
Bpu1102I	GCTNAGC	1 cut(s)	1077
BsaBI	GATNNNNATC	1 cut(s)	260
BsaI	GGTCTC	2 cut(s)	77, 513
BsaJI	CCNNGG	3 cut(s)	45, 613, 1096
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 319, 695
Bse3DI	GCAATG	3 cut(s)	579, 759, 877
Bse8I	GATNNNNATC	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	47, 222
BseDI	CCNNGG	3 cut(s)	45, 613, 1096
BseGI	GGATG	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	260
BseLI	CCNNNNNNNGG	3 cut(s)	221, 319, 695
BseMI	GCAATG	3 cut(s)	579, 759, 877
BseMII	CTCAG	5 cut(s)	121, 893, 930, 1044, 1068
BseXI	GCAGC	4 cut(s)	607, 610, 880, 1058
BsgI	GTGCAG	1 cut(s)	879
BshFI	GGCC	1 cut(s)	578
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	1083
BsiHKCI	CYCGRG	2 cut(s)	495, 1068
BslFI	GGGAC	2 cut(s)	549, 1048
BslI	CCNNNNNNNGG	3 cut(s)	221, 319, 695
BsmAI	GTCTC	2 cut(s)	77, 513
BsmFI	GGGAC	2 cut(s)	549, 1048
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	578
Bso31I	GGTCTC	2 cut(s)	77, 513
BsoBI	CYCGRG	2 cut(s)	495, 1068
Bsp1286I	GDGCHC	2 cut(s)	216, 1083
Bsp143I	GATC	2 cut(s)	685, 910
Bsp1720I	GCTNAGC	1 cut(s)	1077
BspACI	CCGC	2 cut(s)	283, 343
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	5 cut(s)	120, 892, 931, 1045, 1069
BspLI	GGNNCC	3 cut(s)	54, 213, 1036
BspPI	GGATC	2 cut(s)	680, 918
BspT107I	GGYRCC	1 cut(s)	52
BspTNI	GGTCTC	2 cut(s)	77, 513
BsrDI	GCAATG	3 cut(s)	579, 759, 877
BssECI	CCNNGG	3 cut(s)	45, 613, 1096
BssMI	GATC	2 cut(s)	685, 910
BssT1I	CCWWGG	2 cut(s)	613, 1096
Bst2UI	CCWGG	2 cut(s)	47, 222
Bst4CI	ACNGT	4 cut(s)	17, 271, 329, 834
Bst6I	CTCTTC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	454, 517
BstDEI	CTNAG	7 cut(s)	107, 501, 879, 939, 1053, 1077, 1084
BstEII	GGTNACC	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	2 cut(s)	688, 913
BstMAI	GTCTC	2 cut(s)	77, 513
BstMBI	GATC	2 cut(s)	685, 910
BstMWI	GCNNNNNNNGC	4 cut(s)	521, 617, 761, 890
BstNI	CCWGG	2 cut(s)	47, 222
BstNSI	RCATGY	1 cut(s)	731
BstPI	GGTNACC	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	45, 220
BstSFI	CTRYAG	3 cut(s)	267, 415, 844
BstV1I	GCAGC	4 cut(s)	607, 610, 880, 1058
BstX2I	RGATCY	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	910
BsuI	GTATCC	1 cut(s)	603
BsuRI	GGCC	1 cut(s)	578
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	2 cut(s)	526, 776
Cac8I	GCNNGC	2 cut(s)	454, 517
CaiI	CAGNNNCTG	1 cut(s)	1052
Cfr13I	GGNCC	1 cut(s)	1035
CviAII	CATG	4 cut(s)	705, 728, 851, 976
DdeI	CTNAG	7 cut(s)	107, 501, 879, 939, 1053, 1077, 1084
DpnI	GATC	2 cut(s)	687, 912
DpnII	GATC	2 cut(s)	685, 910
DraIII	CACNNNGTG	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	737
EarI	CTCTTC	1 cut(s)	737
Eco130I	CCWWGG	2 cut(s)	613, 1096
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	77, 513
Eco47I	GGWCC	1 cut(s)	1035
Eco57I	CTGAAG	1 cut(s)	800
Eco88I	CYCGRG	2 cut(s)	495, 1068
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	2 cut(s)	45, 220
EcoT14I	CCWWGG	2 cut(s)	613, 1096
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	613, 1096
FaeI	CATG	4 cut(s)	708, 731, 854, 979
FalI	AAGNNNNNCTT	2 cut(s)	964, 996
FaqI	GGGAC	2 cut(s)	549, 1048
FatI	CATG	4 cut(s)	704, 727, 850, 975
Fnu4HI	GCNGC	4 cut(s)	621, 624, 894, 1047
FokI	GGATG	1 cut(s)	99
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	621, 624, 894, 1047
FspBI	CTAG	6 cut(s)	191, 470, 614, 656, 887, 1162
GluI	GCNGC	4 cut(s)	621, 624, 894, 1047
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	578
Hin1II	CATG	4 cut(s)	708, 731, 854, 979
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	2 cut(s)	238, 566
HphI	GGTGA	6 cut(s)	21, 29, 185, 341, 443, 975
Hpy166II	GTNNAC	2 cut(s)	103, 332
Hpy188I	TCNGA	4 cut(s)	110, 354, 1054, 1126
Hpy188III	TCNNGA	4 cut(s)	596, 689, 887, 1070
Hpy8I	GTNNAC	2 cut(s)	103, 332
HpyAV	CCTTC	3 cut(s)	643, 807, 895
HpyCH4III	ACNGT	4 cut(s)	17, 271, 329, 834
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	8 cut(s)	515, 524, 572, 626, 727, 764, 896, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	521, 617, 761, 890
HpyF3I	CTNAG	7 cut(s)	107, 501, 879, 939, 1053, 1077, 1084
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	708, 731, 854, 979
Kzo9I	GATC	2 cut(s)	685, 910
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	4 cut(s)	607, 610, 880, 1058
LweI	GCATC	3 cut(s)	439, 925, 1058
MaeI	CTAG	6 cut(s)	191, 470, 614, 656, 887, 1162
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	3 cut(s)	27, 431, 436
MalI	GATC	2 cut(s)	687, 912
MboI	GATC	2 cut(s)	685, 910
MboII	GAAGA	2 cut(s)	754, 1025
MflI	RGATCY	1 cut(s)	910
MhlI	GDGCHC	2 cut(s)	216, 1083
MluCI	AATT	8 cut(s)	58, 95, 372, 389, 583, 930, 954, 991
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	888
MseI	TTAA	3 cut(s)	39, 629, 806
MspA1I	CMGCKG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	47, 222
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	2 cut(s)	47, 222
MwoI	GCNNNNNNNGC	4 cut(s)	521, 617, 761, 890
NdeII	GATC	2 cut(s)	685, 910
NlaIII	CATG	4 cut(s)	708, 731, 854, 979
NlaIV	GGNNCC	3 cut(s)	54, 213, 1036
NmuCI	GTSAC	2 cut(s)	27, 431
NspI	RCATGY	1 cut(s)	731
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	238
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	622, 625, 895, 1048
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PshBI	ATTAAT	1 cut(s)	806
Psp6I	CCWGG	2 cut(s)	45, 220
PspEI	GGTNACC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	45, 220
PspN4I	GGNNCC	3 cut(s)	54, 213, 1036
PspPI	GGNCC	1 cut(s)	1035
PstNI	CAGNNNCTG	1 cut(s)	1052
PsuI	RGATCY	1 cut(s)	910
SaqAI	TTAA	3 cut(s)	39, 629, 806
SatI	GCNGC	4 cut(s)	621, 624, 894, 1047
Sau3AI	GATC	2 cut(s)	685, 910
Sau96I	GGNCC	1 cut(s)	1035
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	2 cut(s)	47, 222
SduI	GDGCHC	2 cut(s)	216, 1083
SfaNI	GCATC	3 cut(s)	439, 925, 1058
SfcI	CTRYAG	3 cut(s)	267, 415, 844
SinI	GGWCC	1 cut(s)	1035
Sse9I	AATT	8 cut(s)	58, 95, 372, 389, 583, 930, 954, 991
SsiI	CCGC	2 cut(s)	283, 343
SspI	AATATT	2 cut(s)	408, 715
SspMI	CTAG	6 cut(s)	191, 470, 614, 656, 887, 1162
StyD4I	CCNGG	2 cut(s)	45, 220
StyI	CCWWGG	2 cut(s)	613, 1096
TaaI	ACNGT	4 cut(s)	17, 271, 329, 834
TaiI	ACGT	1 cut(s)	438
TasI	AATT	8 cut(s)	58, 95, 372, 389, 583, 930, 954, 991
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	3 cut(s)	39, 629, 806
Tru9I	TTAA	3 cut(s)	39, 629, 806
TscAI	CASTG	2 cut(s)	526, 783
TseFI	GTSAC	2 cut(s)	27, 431
TseI	GCWGC	4 cut(s)	620, 623, 893, 1046
Tsp45I	GTSAC	2 cut(s)	27, 431
TspDTI	ATGAA	4 cut(s)	414, 748, 984, 1026
TspGWI	ACGGA	1 cut(s)	913
TspRI	CASTG	2 cut(s)	526, 783
VpaK11BI	GGWCC	1 cut(s)	1035
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	4 cut(s)	58, 95, 372, 583
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	1 cut(s)	731
XmaJI	CCTAGG	1 cut(s)	613
XspI	CTAG	6 cut(s)	191, 470, 614, 656, 887, 1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.