Rroxscaffold_160G00433640

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0000877
Physical Location & Seq
Reverse (-)
12470 .. 27080
14611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433640.1

Sequence Viewer

Length: 1275 bp
ATGGTACTTTTATCAAACACAACATCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCAGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTTCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGGATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCACACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGACACGTAGTCACACAAAGGAACGTGTATTGATGATGATGGAAACATTGGTTCAGGGTATCAAGGAGCCCTCTGCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGCAGTCCGCAATGGCCTTGAATTCTCTGTATCCTGGTGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATGGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATGGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTGAGGCTCTAGAAGCTACGCGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTAGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGGTGCTTGAGGCCAGTTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

424

Amino Acids

46.98

Weight (kDa)

5.13

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 255 - 286 8.3e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 723
AccI GTMKAC 1 cut(s) 407
AccII CGCG 2 cut(s) 289, 1033
AciI CCGC 4 cut(s) 544, 571, 732, 1033
AclWI GGATC 3 cut(s) 247, 842, 1053
AcsI RAATTY 2 cut(s) 600, 745
AcuI CTGAAG 1 cut(s) 962
AfaI GTAC 2 cut(s) 6, 214
AfiI CCNNNNNNNGG 6 cut(s) 482, 723, 857, 970, 1166, 1167
AflIII ACRYGT 2 cut(s) 410, 430
AgsI TTSAA 5 cut(s) 153, 203, 677, 745, 949
AhdI GACNNNNNGTC 1 cut(s) 414
AjnI CCWGG 4 cut(s) 61, 255, 716, 757
AloI GAACNNNNNNTCC 2 cut(s) 552, 584
AluBI AGCT 7 cut(s) 349, 671, 844, 917, 960, 1028, 1211
AluI AGCT 7 cut(s) 349, 671, 844, 917, 960, 1028, 1211
Alw21I GWGCWC 2 cut(s) 287, 1218
AlwI GGATC 3 cut(s) 247, 842, 1053
AlwNI CAGNNNCTG 2 cut(s) 671, 1187
Ama87I CYCGRG 1 cut(s) 831
AoxI GGCC 3 cut(s) 64, 738, 1260
ApeKI GCWGC 5 cut(s) 218, 665, 668, 782, 785
ApoI RAATTY 2 cut(s) 600, 745
AspA2I CCTAGG 1 cut(s) 775
AspS9I GGNCC 2 cut(s) 65, 1170
AsuHPI GGTGA 2 cut(s) 569, 1110
AvaI CYCGRG 1 cut(s) 831
AvaII GGWCC 1 cut(s) 1170
AvrII CCTAGG 1 cut(s) 775
BanII GRGCYC 2 cut(s) 43, 477
Bbv12I GWGCWC 2 cut(s) 287, 1218
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 205, 677, 680, 769, 772
BccI CCATC 7 cut(s) 121, 249, 303, 439, 791, 815, 1139
BceAI ACGGC 1 cut(s) 707
BciT130I CCWGG 4 cut(s) 63, 257, 718, 759
BciVI GTATCC 1 cut(s) 765
BclI TGATCA 1 cut(s) 681
BfaI CTAG 4 cut(s) 776, 818, 1022, 1203
BfmI CTRYAG 4 cut(s) 480, 528, 643, 979
BfuI GTATCC 1 cut(s) 765
BglI GCCNNNNNGGC 1 cut(s) 779
BisI GCNGC 5 cut(s) 219, 666, 669, 783, 786
BlnI CCTAGG 1 cut(s) 775
BlpI GCTNAGC 1 cut(s) 1212
BlsI GCNGC 5 cut(s) 220, 667, 670, 784, 787
Bme1390I CCNGG 4 cut(s) 63, 257, 718, 759
Bme18I GGWCC 1 cut(s) 1170
BmeRI GACNNNNNGTC 1 cut(s) 414
BmeT110I CYCGRG 1 cut(s) 831
BmgT120I GGNCC 2 cut(s) 65, 1170
BmiI GGNNCC 3 cut(s) 321, 474, 1171
BmrFI CCNGG 4 cut(s) 63, 257, 718, 759
BmsI GCATC 3 cut(s) 118, 365, 1060
BplI GAGNNNNNCTC 2 cut(s) 25, 57
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu1102I GCTNAGC 1 cut(s) 1212
BsaAI YACGTR 2 cut(s) 392, 413
BsaBI GATNNNNATC 1 cut(s) 521
BsaJI CCNNGG 3 cut(s) 61, 716, 775
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 6 cut(s) 482, 723, 857, 970, 1166, 1167
Bse1I ACTGG 1 cut(s) 1263
Bse3DI GCAATG 3 cut(s) 741, 1012, 1140
Bse8I GATNNNNATC 1 cut(s) 521
BseBI CCWGG 4 cut(s) 63, 257, 718, 759
BseDI CCNNGG 3 cut(s) 61, 716, 775
BseGI GGATG 2 cut(s) 109, 802
BseJI GATNNNNATC 1 cut(s) 521
BseLI CCNNNNNNNGG 6 cut(s) 482, 723, 857, 970, 1166, 1167
BseMI GCAATG 3 cut(s) 741, 1012, 1140
BseMII CTCAG 5 cut(s) 108, 359, 1005, 1065, 1203
BseNI ACTGG 1 cut(s) 1263
BseXI GCAGC 5 cut(s) 205, 677, 680, 769, 772
Bsh1236I CGCG 2 cut(s) 289, 1033
BshFI GGCC 3 cut(s) 66, 740, 1262
BsiHKAI GWGCWC 2 cut(s) 287, 1218
BsiHKCI CYCGRG 1 cut(s) 831
BslFI GGGAC 2 cut(s) 106, 1183
BslI CCNNNNNNNGG 6 cut(s) 482, 723, 857, 970, 1166, 1167
BsmFI GGGAC 2 cut(s) 106, 1183
BsnI GGCC 3 cut(s) 66, 740, 1262
BsoBI CYCGRG 1 cut(s) 831
Bsp1286I GDGCHC 4 cut(s) 43, 287, 477, 1218
Bsp143I GATC 4 cut(s) 252, 681, 847, 1045
Bsp1720I GCTNAGC 1 cut(s) 1212
BspACI CCGC 4 cut(s) 544, 571, 732, 1033
BspANI GGCC 3 cut(s) 66, 740, 1262
BspCNI CTCAG 5 cut(s) 109, 358, 1006, 1066, 1204
BspFNI CGCG 2 cut(s) 289, 1033
BspLI GGNNCC 3 cut(s) 321, 474, 1171
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 3 cut(s) 247, 842, 1053
BspQI GCTCTTC 1 cut(s) 275
BsrDI GCAATG 3 cut(s) 741, 1012, 1140
BsrI ACTGG 1 cut(s) 1263
BssECI CCNNGG 3 cut(s) 61, 716, 775
BssMI GATC 4 cut(s) 252, 681, 847, 1045
BssT1I CCWWGG 1 cut(s) 775
Bst2UI CCWGG 4 cut(s) 63, 257, 718, 759
Bst4CI ACNGT 3 cut(s) 532, 557, 969
Bst6I CTCTTC 2 cut(s) 275, 899
BstBAI YACGTR 2 cut(s) 392, 413
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 7 cut(s) 105, 117, 345, 1014, 1074, 1212, 1219
BstF5I GGATG 2 cut(s) 109, 802
BstFNI CGCG 2 cut(s) 289, 1033
BstKTI GATC 4 cut(s) 255, 684, 850, 1048
BstMBI GATC 4 cut(s) 252, 681, 847, 1045
BstMWI GCNNNNNNNGC 4 cut(s) 488, 779, 923, 1025
BstNI CCWGG 4 cut(s) 63, 257, 718, 759
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 4 cut(s) 61, 255, 716, 757
BstSFI CTRYAG 4 cut(s) 480, 528, 643, 979
BstSNI TACGTA 1 cut(s) 392
BstUI CGCG 2 cut(s) 289, 1033
BstV1I GCAGC 5 cut(s) 205, 677, 680, 769, 772
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
BsuI GTATCC 1 cut(s) 765
BsuRI GGCC 3 cut(s) 66, 740, 1262
BtsCI GGATG 2 cut(s) 109, 802
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 255, 938, 1171
Cac8I GCNNGC 1 cut(s) 287
CaiI CAGNNNCTG 2 cut(s) 671, 1187
Cfr13I GGNCC 2 cut(s) 65, 1170
Csp6I GTAC 2 cut(s) 5, 213
CviAII CATG 6 cut(s) 125, 293, 301, 867, 986, 1111
CviQI GTAC 2 cut(s) 5, 213
DdeI CTNAG 7 cut(s) 105, 117, 345, 1014, 1074, 1212, 1219
DpnI GATC 4 cut(s) 254, 683, 849, 1047
DpnII GATC 4 cut(s) 252, 681, 847, 1045
DriI GACNNNNNGTC 1 cut(s) 414
Eam1104I CTCTTC 2 cut(s) 275, 899
Eam1105I GACNNNNNGTC 1 cut(s) 414
EarI CTCTTC 2 cut(s) 275, 899
Eco105I TACGTA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 775
Eco24I GRGCYC 2 cut(s) 43, 477
Eco47I GGWCC 1 cut(s) 1170
Eco57I CTGAAG 1 cut(s) 962
Eco88I CYCGRG 1 cut(s) 831
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 4 cut(s) 61, 255, 716, 757
EcoT14I CCWWGG 1 cut(s) 775
EcoT38I GRGCYC 2 cut(s) 43, 477
ErhI CCWWGG 1 cut(s) 775
FaeI CATG 6 cut(s) 128, 296, 304, 870, 989, 1114
FalI AAGNNNNNCTT 2 cut(s) 1099, 1131
FaqI GGGAC 2 cut(s) 106, 1183
FatI CATG 6 cut(s) 124, 292, 300, 866, 985, 1110
FauNDI CATATG 1 cut(s) 891
FbaI TGATCA 1 cut(s) 681
FblI GTMKAC 1 cut(s) 407
Fnu4HI GCNGC 5 cut(s) 219, 666, 669, 783, 786
FokI GGATG 2 cut(s) 96, 809
FriOI GRGCYC 2 cut(s) 43, 477
Fsp4HI GCNGC 5 cut(s) 219, 666, 669, 783, 786
FspBI CTAG 4 cut(s) 776, 818, 1022, 1203
GluI GCNGC 5 cut(s) 219, 666, 669, 783, 786
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 66, 740, 1262
Hin1II CATG 6 cut(s) 128, 296, 304, 870, 989, 1114
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 915
HinfI GANTC 8 cut(s) 80, 119, 176, 199, 341, 404, 499, 1184
HphI GGTGA 2 cut(s) 569, 1110
Hpy166II GTNNAC 2 cut(s) 408, 560
Hpy188I TCNGA 8 cut(s) 55, 118, 136, 193, 582, 633, 700, 1189
Hpy188III TCNNGA 5 cut(s) 153, 180, 685, 851, 1022
Hpy8I GTNNAC 2 cut(s) 408, 560
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 4 cut(s) 278, 541, 805, 1030
HpyCH4III ACNGT 3 cut(s) 532, 557, 969
HpyCH4IV ACGT 3 cut(s) 391, 412, 430
HpyCH4V TGCA 6 cut(s) 236, 304, 482, 788, 889, 1181
HpyF10VI GCNNNNNNNGC 4 cut(s) 488, 779, 923, 1025
HpyF3I CTNAG 7 cut(s) 105, 117, 345, 1014, 1074, 1212, 1219
HpySE526I ACGT 3 cut(s) 391, 412, 430
Hsp92II CATG 6 cut(s) 128, 296, 304, 870, 989, 1114
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 4 cut(s) 252, 681, 847, 1045
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 2 cut(s) 325, 472
Lsp1109I GCAGC 5 cut(s) 205, 677, 680, 769, 772
LweI GCATC 3 cut(s) 118, 365, 1060
MaeI CTAG 4 cut(s) 776, 818, 1022, 1203
MaeII ACGT 3 cut(s) 391, 412, 430
MaeIII GTNAC 1 cut(s) 416
MalI GATC 4 cut(s) 254, 683, 849, 1047
MboI GATC 4 cut(s) 252, 681, 847, 1045
MboII GAAGA 2 cut(s) 292, 916
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 4 cut(s) 43, 287, 477, 1218
MluCI AATT 8 cut(s) 273, 336, 600, 617, 745, 1065, 1089, 1126
MlyI GAGTC 2 cut(s) 128, 413
MmeI TCCRAC 2 cut(s) 1023, 1062
MseI TTAA 1 cut(s) 791
MspA1I CMGCKG 2 cut(s) 573, 671
MspR9I CCNGG 4 cut(s) 63, 257, 718, 759
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 4 cut(s) 63, 257, 718, 759
MvnI CGCG 2 cut(s) 289, 1033
MwoI GCNNNNNNNGC 4 cut(s) 488, 779, 923, 1025
NdeI CATATG 1 cut(s) 891
NdeII GATC 4 cut(s) 252, 681, 847, 1045
NlaIII CATG 6 cut(s) 128, 296, 304, 870, 989, 1114
NlaIV GGNNCC 3 cut(s) 321, 474, 1171
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 275
PfeI GAWTC 6 cut(s) 80, 176, 199, 341, 499, 1184
PflMI CCANNNNNTGG 1 cut(s) 723
PkrI GCNGC 5 cut(s) 220, 667, 670, 784, 787
PleI GAGTC 2 cut(s) 127, 412
PpsI GAGTC 2 cut(s) 127, 412
Ppu21I YACGTR 2 cut(s) 392, 413
Psp6I CCWGG 4 cut(s) 61, 255, 716, 757
PspGI CCWGG 4 cut(s) 61, 255, 716, 757
PspN4I GGNNCC 3 cut(s) 321, 474, 1171
PspPI GGNCC 2 cut(s) 65, 1170
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 2 cut(s) 671, 1187
PsuI RGATCY 1 cut(s) 1045
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 2 cut(s) 6, 214
RsaNI GTAC 2 cut(s) 5, 213
SalI GTCGAC 1 cut(s) 406
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 791
SatI GCNGC 5 cut(s) 219, 666, 669, 783, 786
Sau3AI GATC 4 cut(s) 252, 681, 847, 1045
Sau96I GGNCC 2 cut(s) 65, 1170
SchI GAGTC 2 cut(s) 128, 413
ScrFI CCNGG 4 cut(s) 63, 257, 718, 759
SduI GDGCHC 4 cut(s) 43, 287, 477, 1218
SfaNI GCATC 3 cut(s) 118, 365, 1060
SfcI CTRYAG 4 cut(s) 480, 528, 643, 979
SinI GGWCC 1 cut(s) 1170
SmlI CTYRAG 1 cut(s) 1256
SmoI CTYRAG 1 cut(s) 1256
SnaBI TACGTA 1 cut(s) 392
Sse9I AATT 8 cut(s) 273, 336, 600, 617, 745, 1065, 1089, 1126
SsiI CCGC 4 cut(s) 544, 571, 732, 1033
SspI AATATT 1 cut(s) 877
SspMI CTAG 4 cut(s) 776, 818, 1022, 1203
StyD4I CCNGG 4 cut(s) 61, 255, 716, 757
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 3 cut(s) 532, 557, 969
TaiI ACGT 3 cut(s) 394, 415, 433
TaqI TCGA 2 cut(s) 330, 407
TasI AATT 8 cut(s) 273, 336, 600, 617, 745, 1065, 1089, 1126
TfiI GAWTC 6 cut(s) 80, 176, 199, 341, 499, 1184
Tru1I TTAA 1 cut(s) 791
Tru9I TTAA 1 cut(s) 791
TscAI CASTG 3 cut(s) 255, 945, 1171
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 5 cut(s) 218, 665, 668, 782, 785
Tsp45I GTSAC 1 cut(s) 416
TspRI CASTG 3 cut(s) 255, 945, 1171
Van91I CCANNNNNTGG 1 cut(s) 723
VpaK11BI GGWCC 1 cut(s) 1170
XapI RAATTY 2 cut(s) 600, 745
XbaI TCTAGA 1 cut(s) 1021
XceI RCATGY 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 407
XspI CTAG 4 cut(s) 776, 818, 1022, 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.