Rh1DG049000

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Reverse (-)
7953788 .. 7955969
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG049000.1

Sequence Viewer

Length: 408 bp
ATGGCTGCTGCCTCTGACTTGCTTGGAAAAGTCTATAATATTCAGCAAACACAACTTCATCGAAGAGTGGGGCTCTCTGCCCCACTGAAAGCTCTGCCCCCCCATAGATATGATTCTATCGGCGAAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATGGACTCCAAGATTGGTAGAGAATGAGAGTGATTCTGGAGGTATATCAGACGGCATTCAAGTTGGTGGCACTGCTGCTGACCCTTTGAGTGCAATCCATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCTCGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

135

Amino Acids

14.86

Weight (kDa)

5.39

Isoelectric Point (pI)

53.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AclWI GGATC 1 cut(s) 280
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 3 cut(s) 92, 318, 382
AluI AGCT 3 cut(s) 92, 318, 382
Alw21I GWGCWC 1 cut(s) 320
AlwI GGATC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 5, 8, 251
BanII GRGCYC 2 cut(s) 75, 320
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 238
BccI CCATC 3 cut(s) 154, 282, 336
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 290
BisI GCNGC 3 cut(s) 6, 9, 252
BlsI GCNGC 3 cut(s) 7, 10, 253
Bme1390I CCNGG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 151
BplI GAGNNNNNCTC 4 cut(s) 57, 89, 302, 334
BpmI CTGGAG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 141, 392
BseXI GCAGC 1 cut(s) 238
Bsh1236I CGCG 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 320
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsmI GAATGC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 75, 320
Bsp143I GATC 1 cut(s) 285
Bsp68I TCGCGA 1 cut(s) 322
BspCNI CTCAG 2 cut(s) 142, 391
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 308
BssMI GATC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 58, 308
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 138, 150, 378
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 322
BstKTI GATC 1 cut(s) 288
BstMBI GATC 1 cut(s) 285
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 288
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 2 cut(s) 246, 288
BtsIMutI CAGTG 3 cut(s) 83, 246, 288
BtuMI TCGCGA 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 320
CviAII CATG 3 cut(s) 158, 326, 334
CviJI RGCY 8 cut(s) 5, 73, 92, 164, 293, 318, 353, 382
CviKI_1 RGCY 8 cut(s) 5, 73, 92, 164, 293, 318, 353, 382
DdeI CTNAG 3 cut(s) 138, 150, 378
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 58, 308
EarI CTCTTC 2 cut(s) 58, 308
Ecl136II GAGCTC 1 cut(s) 318
Eco24I GRGCYC 2 cut(s) 75, 320
Eco53kI GAGCTC 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 75, 320
FaeI CATG 3 cut(s) 161, 329, 337
FaqI GGGAC 1 cut(s) 139
FatI CATG 3 cut(s) 157, 325, 333
Fnu4HI GCNGC 3 cut(s) 6, 9, 252
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 2 cut(s) 75, 320
Fsp4HI GCNGC 3 cut(s) 6, 9, 252
GluI GCNGC 3 cut(s) 6, 9, 252
GsuI CTGGAG 1 cut(s) 234
Hin1II CATG 3 cut(s) 161, 329, 337
HinfI GANTC 5 cut(s) 113, 152, 181, 209, 374
Hpy188I TCNGA 4 cut(s) 16, 151, 169, 226
Hpy188III TCNNGA 2 cut(s) 213, 321
HpyAV CCTTC 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 269, 337
HpyF3I CTNAG 3 cut(s) 138, 150, 378
Hsp92II CATG 3 cut(s) 161, 329, 337
Kzo9I GATC 1 cut(s) 285
LguI GCTCTTC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 4 cut(s) 198, 263, 275, 302
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 151
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 2 cut(s) 75, 325
MfeI CAATTG 1 cut(s) 369
MhlI GDGCHC 2 cut(s) 75, 320
MluCI AATT 2 cut(s) 306, 369
MlyI GAGTC 2 cut(s) 161, 175
MnlI CCTC 4 cut(s) 22, 154, 209, 358
MslI CAYNNNNRTG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 290
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 231
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 322
NdeII GATC 1 cut(s) 285
NlaIII CATG 3 cut(s) 161, 329, 337
NlaIV GGNNCC 1 cut(s) 354
NruI TCGCGA 1 cut(s) 322
NspI RCATGY 1 cut(s) 337
PciSI GCTCTTC 1 cut(s) 308
PctI GAATGC 1 cut(s) 231
PfeI GAWTC 3 cut(s) 113, 209, 374
PkrI GCNGC 3 cut(s) 7, 10, 253
PleI GAGTC 2 cut(s) 160, 175
PpsI GAGTC 2 cut(s) 160, 175
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 354
RruI TCGCGA 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 320
SapI GCTCTTC 1 cut(s) 308
SatI GCNGC 3 cut(s) 6, 9, 252
Sau3AI GATC 1 cut(s) 285
SchI GAGTC 2 cut(s) 161, 175
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 2 cut(s) 75, 320
SetI ASST 4 cut(s) 94, 220, 320, 384
SfaNI GCATC 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 2 cut(s) 306, 369
SspI AATATT 1 cut(s) 40
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 1 cut(s) 288
TaqI TCGA 2 cut(s) 61, 363
TasI AATT 2 cut(s) 306, 369
TfiI GAWTC 3 cut(s) 113, 209, 374
TscAI CASTG 3 cut(s) 90, 253, 288
TseI GCWGC 3 cut(s) 5, 8, 251
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 3 cut(s) 90, 253, 288
XceI RCATGY 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.