Rmu_sc0002745.1_g000003

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002745.1
OG0000877
Physical Location & Seq
Forward (+)
15055 .. 21867
6813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002745.1_g000003.1.cds

Sequence Viewer

Length: 1575 bp
atgtttgcaattgaagcactgctgtacgacgcggaggaggaaaagcaaagcgtcgtcgtattctgcattgccgtagctgccttcgagtccgaacctctggaggggctgccaaggtgttcgttgccactggaagtgcccttatgtgatgagtgggacaattgggcgcggaatcagcttatggctgctgcctctgacttgcttggaaaagtctataatattcagtatataatttatgcaaagatattggtcatgaagatgaaagatttgttatttgaaggaagtttgtcttgtacatatggaattaggagcctttcatggtggctcactagggtcacccttctccatcagcgcattctcgatgagaggtcttcatctttgtttgaccttttgcatggattgacacttgtctcagtgattcatctggaagctggaatgatggaacacatctatgcacgtgttgattcctgcaggttgcattttgaatcagctgaagcagcgctggtgttaagctttcagttacaggggttcttggcttccgtactatacatcagtcacacaaaggaacgtgcattgatgatgatggaaacattggttcagggtatcaaggagccctctccaggagtgacagacaggattcctttctgctgtgggatttatatccctacagtttcagccttgcggaaggaatacggtgaactttgtgtccgctgtggtctgataggagaggcagtcaaaatttttgaggacttggaattatgggataatctgatattctgctataatctattggagaaaaaagcagcagctgttgaactgatcaagacacggctttctgaaacacctaatgaccccaggttatggtgttcattcggtgacgttactaatgatgatgcctgctttaaaaaagccctagaagtttcaaacgataagtcggctcgggctaagcggtctcttgcacgcagtgcatacaacaggggggaatataaaacatctaaacttctgtggcagtctgcaatggccttgaattctctgtatcctgatggctggtttgccctaggggctgctgcattaaagtatggggatattgagaaggcactagatggcttcactcgggctgttcagctcgatcctgaaaatggggaggcatggaataatattgcttgtttgcatatgataaaagggaagcgtaaagaagcttttattgcatttaaagaagcattgaagttcaaacgaaacagctaccaactgtgggagaactacagccatgttgctttagatgttggcaatgttgctcaggcaagtgctttcctccaaaaagctacacgtaaggtgttggatcttactaataataagagaattgatgctgagttgttggaaagaattatgacagaggtggaaagcatggcttcacctactaattcagcaatgactgatgatggagataactttcccgtcagtgggaccacaaatgcagaatctgatgtgggaaaatctcgggaagctgagcacttagtagagtttcttggaaaagttctacaacagggagcggacaaggagtctgctttaatgatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

524

Amino Acids

58.76

Weight (kDa)

5.31

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 459
AccB7I CCANNNNNTGG 1 cut(s) 858
AccBSI CCGCTC 1 cut(s) 1547
AccII CGCG 2 cut(s) 32, 166
AciI CCGC 6 cut(s) 32, 166, 679, 706, 946, 1547
AclWI GGATC 2 cut(s) 1121, 1344
AcsI RAATTY 2 cut(s) 735, 1024
AcuI CTGAAG 1 cut(s) 510
AcvI CACGTG 1 cut(s) 455
AdeI CACNNNGTG 1 cut(s) 962
AfaI GTAC 3 cut(s) 26, 292, 540
AfeI AGCGCT 1 cut(s) 498
AfiI CCNNNNNNNGG 7 cut(s) 101, 617, 858, 1136, 1249, 1457, 1458
AflIII ACRYGT 2 cut(s) 454, 1322
AgsI TTSAA 8 cut(s) 14, 275, 482, 812, 921, 1024, 1222, 1228
AhdI GACNNNNNGTC 1 cut(s) 1555
AjnI CCWGG 2 cut(s) 616, 851
AloI GAACNNNNNNTCC 2 cut(s) 687, 719
Alw21I GWGCWC 1 cut(s) 1509
Alw26I GTCTC 2 cut(s) 412, 954
AlwI GGATC 2 cut(s) 1121, 1344
AlwNI CAGNNNCTG 2 cut(s) 806, 1478
Ama87I CYCGRG 3 cut(s) 936, 1110, 1494
Aor51HI AGCGCT 1 cut(s) 498
AoxI GGCC 1 cut(s) 1017
ApeKI GCWGC 9 cut(s) 77, 106, 182, 185, 494, 800, 803, 1061, 1064
ApoI RAATTY 2 cut(s) 735, 1024
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AspA2I CCTAGG 1 cut(s) 1054
AspLEI GCGC 3 cut(s) 166, 351, 499
AspS9I GGNCC 1 cut(s) 1461
AsuHPI GGTGA 4 cut(s) 325, 704, 884, 1401
AvaI CYCGRG 3 cut(s) 936, 1110, 1494
AvaII GGWCC 1 cut(s) 1461
AvrII CCTAGG 1 cut(s) 1054
BaeGI GKGCMC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 612
BbrPI CACGTG 1 cut(s) 455
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 1509
BbvI GCAGC 9 cut(s) 64, 93, 169, 172, 506, 812, 815, 1048, 1051
BccI CCATC 6 cut(s) 351, 430, 574, 1034, 1094, 1430
BceAI ACGGC 2 cut(s) 56, 842
BciT130I CCWGG 2 cut(s) 618, 853
BciVI GTATCC 1 cut(s) 1044
BclI TGATCA 1 cut(s) 816
BcoDI GTCTC 2 cut(s) 412, 954
BfaI CTAG 4 cut(s) 327, 911, 1055, 1097
BfmI CTRYAG 3 cut(s) 466, 663, 1258
BfoI RGCGCY 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 459
BfuI GTATCC 1 cut(s) 1044
BglI GCCNNNNNGGC 1 cut(s) 1058
BisI GCNGC 9 cut(s) 78, 107, 183, 186, 495, 801, 804, 1062, 1065
BlnI CCTAGG 1 cut(s) 1054
BlpI GCTNAGC 2 cut(s) 942, 1503
BlsI GCNGC 9 cut(s) 79, 108, 184, 187, 496, 802, 805, 1063, 1066
Bme1390I CCNGG 2 cut(s) 618, 853
Bme18I GGWCC 1 cut(s) 1461
BmeRI GACNNNNNGTC 1 cut(s) 1555
BmeT110I CYCGRG 3 cut(s) 936, 1110, 1494
BmgT120I GGNCC 1 cut(s) 1461
BmiI GGNNCC 3 cut(s) 308, 609, 1462
BmrFI CCNGG 2 cut(s) 618, 853
BmsI GCATC 2 cut(s) 880, 1351
BoxI GACNNNNGTC 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 2 cut(s) 119, 600
Bpu10I CCTNAGC 1 cut(s) 1293
Bpu1102I GCTNAGC 2 cut(s) 942, 1503
BsaAI YACGTR 2 cut(s) 455, 1325
BsaBI GATNNNNATC 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 954
BsaJI CCNNGG 3 cut(s) 110, 851, 1054
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 7 cut(s) 101, 617, 858, 1136, 1249, 1457, 1458
Bse1I ACTGG 1 cut(s) 132
Bse3DI GCAATG 4 cut(s) 66, 1020, 1291, 1431
Bse8I GATNNNNATC 1 cut(s) 656
BseBI CCWGG 2 cut(s) 618, 853
BseDI CCNNGG 3 cut(s) 110, 851, 1054
BseJI GATNNNNATC 1 cut(s) 656
BseLI CCNNNNNNNGG 7 cut(s) 101, 617, 858, 1136, 1249, 1457, 1458
BseMI GCAATG 4 cut(s) 66, 1020, 1291, 1431
BseMII CTCAG 4 cut(s) 423, 1307, 1356, 1494
BseNI ACTGG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 9 cut(s) 64, 93, 169, 172, 506, 812, 815, 1048, 1051
Bsh1236I CGCG 2 cut(s) 32, 166
BshFI GGCC 1 cut(s) 1019
BsiHKAI GWGCWC 1 cut(s) 1509
BsiHKCI CYCGRG 3 cut(s) 936, 1110, 1494
BslFI GGGAC 2 cut(s) 167, 1474
BslI CCNNNNNNNGG 7 cut(s) 101, 617, 858, 1136, 1249, 1457, 1458
BsmAI GTCTC 2 cut(s) 412, 954
BsmFI GGGAC 2 cut(s) 167, 1474
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 1019
Bso31I GGTCTC 1 cut(s) 954
BsoBI CYCGRG 3 cut(s) 936, 1110, 1494
Bsp1286I GDGCHC 3 cut(s) 138, 612, 1509
Bsp1407I TGTACA 1 cut(s) 290
Bsp143I GATC 4 cut(s) 816, 1126, 1336, 1569
Bsp1720I GCTNAGC 2 cut(s) 942, 1503
BspACI CCGC 6 cut(s) 32, 166, 679, 706, 946, 1547
BspANI GGCC 1 cut(s) 1019
BspCNI CTCAG 4 cut(s) 422, 1306, 1357, 1495
BspFNI CGCG 2 cut(s) 32, 166
BspHI TCATGA 1 cut(s) 249
BspLI GGNNCC 3 cut(s) 308, 609, 1462
BspMAI CTGCAG 1 cut(s) 470
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 2 cut(s) 1121, 1344
BspTNI GGTCTC 1 cut(s) 954
BsrBI CCGCTC 1 cut(s) 1547
BsrDI GCAATG 4 cut(s) 66, 1020, 1291, 1431
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 110, 851, 1054
BssMI GATC 4 cut(s) 816, 1126, 1336, 1569
BssT1I CCWWGG 2 cut(s) 110, 1054
Bst2UI CCWGG 2 cut(s) 618, 853
Bst4CI ACNGT 3 cut(s) 667, 692, 1248
BstAPI GCANNNNNTGC 1 cut(s) 962
BstAUI TGTACA 1 cut(s) 290
BstBAI YACGTR 2 cut(s) 455, 1325
BstC8I GCNNGC 2 cut(s) 895, 958
BstDEI CTNAG 6 cut(s) 409, 942, 1293, 1365, 1503, 1510
BstEII GGTNACC 1 cut(s) 331
BstFNI CGCG 2 cut(s) 32, 166
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 3 cut(s) 166, 351, 499
BstKTI GATC 4 cut(s) 819, 1129, 1339, 1572
BstMAI GTCTC 2 cut(s) 412, 954
BstMBI GATC 4 cut(s) 816, 1126, 1336, 1569
BstMWI GCNNNNNNNGC 7 cut(s) 14, 77, 172, 494, 962, 1058, 1202
BstNI CCWGG 2 cut(s) 618, 853
BstPAI GACNNNNGTC 1 cut(s) 404
BstPI GGTNACC 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 616, 851
BstSFI CTRYAG 3 cut(s) 466, 663, 1258
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 2 cut(s) 32, 166
BstV1I GCAGC 9 cut(s) 64, 93, 169, 172, 506, 812, 815, 1048, 1051
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 1 cut(s) 1336
BstYI RGATCY 1 cut(s) 1336
BsuI GTATCC 1 cut(s) 1044
BsuRI GGCC 1 cut(s) 1019
BtsI GCAGTG 2 cut(s) 17, 967
BtsIMutI CAGTG 5 cut(s) 17, 125, 417, 967, 1462
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 2 cut(s) 895, 958
CaiI CAGNNNCTG 2 cut(s) 806, 1478
CciI TCATGA 1 cut(s) 249
CfoI GCGC 3 cut(s) 166, 351, 499
Cfr13I GGNCC 1 cut(s) 1461
CseI GACGC 2 cut(s) 38, 40
Csp6I GTAC 3 cut(s) 25, 291, 539
CviAII CATG 6 cut(s) 250, 315, 392, 1146, 1265, 1402
CviQI GTAC 3 cut(s) 25, 291, 539
DdeI CTNAG 6 cut(s) 409, 942, 1293, 1365, 1503, 1510
DpnI GATC 4 cut(s) 818, 1128, 1338, 1571
DpnII GATC 4 cut(s) 816, 1126, 1336, 1569
DraI TTTAAA 2 cut(s) 901, 1210
DraIII CACNNNGTG 1 cut(s) 962
DriI GACNNNNNGTC 1 cut(s) 1555
Eam1105I GACNNNNNGTC 1 cut(s) 1555
Eco130I CCWWGG 2 cut(s) 110, 1054
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 954
Eco47I GGWCC 1 cut(s) 1461
Eco47III AGCGCT 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 510
Eco72I CACGTG 1 cut(s) 455
Eco88I CYCGRG 3 cut(s) 936, 1110, 1494
Eco91I GGTNACC 1 cut(s) 331
EcoO65I GGTNACC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 1024
EcoRII CCWGG 2 cut(s) 616, 851
EcoT14I CCWWGG 2 cut(s) 110, 1054
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 2 cut(s) 110, 1054
FaeI CATG 6 cut(s) 253, 318, 395, 1149, 1268, 1405
FalI AAGNNNNNCTT 4 cut(s) 271, 303, 1390, 1422
FaqI GGGAC 2 cut(s) 167, 1474
FatI CATG 6 cut(s) 249, 314, 391, 1145, 1264, 1401
FauNDI CATATG 2 cut(s) 295, 1170
FbaI TGATCA 1 cut(s) 816
Fnu4HI GCNGC 9 cut(s) 78, 107, 183, 186, 495, 801, 804, 1062, 1065
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 9 cut(s) 78, 107, 183, 186, 495, 801, 804, 1062, 1065
FspBI CTAG 4 cut(s) 327, 911, 1055, 1097
GlaI GCGC 3 cut(s) 165, 350, 498
GluI GCNGC 9 cut(s) 78, 107, 183, 186, 495, 801, 804, 1062, 1065
GsuI CTGGAG 2 cut(s) 119, 600
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 1 cut(s) 1019
HgaI GACGC 2 cut(s) 38, 40
HhaI GCGC 3 cut(s) 166, 351, 499
Hin1II CATG 6 cut(s) 253, 318, 395, 1149, 1268, 1405
Hin6I GCGC 3 cut(s) 164, 349, 497
HinP1I GCGC 3 cut(s) 164, 349, 497
HindIII AAGCTT 2 cut(s) 508, 1194
HinfI GANTC 8 cut(s) 86, 169, 415, 461, 482, 634, 1475, 1556
HphI GGTGA 4 cut(s) 325, 704, 884, 1401
Hpy166II GTNNAC 1 cut(s) 695
Hpy188I TCNGA 6 cut(s) 91, 193, 717, 768, 835, 1480
Hpy188III TCNNGA 8 cut(s) 98, 250, 356, 422, 820, 1037, 1130, 1496
Hpy8I GTNNAC 1 cut(s) 695
Hpy99I CGWCG 3 cut(s) 32, 56, 59
HpyAV CCTTC 5 cut(s) 91, 269, 347, 676, 1084
HpyCH4III ACNGT 3 cut(s) 667, 692, 1248
HpyCH4IV ACGT 4 cut(s) 454, 565, 876, 1324
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 77, 172, 494, 962, 1058, 1202
HpyF3I CTNAG 6 cut(s) 409, 942, 1293, 1365, 1503, 1510
HpySE526I ACGT 4 cut(s) 454, 565, 876, 1324
Hsp92II CATG 6 cut(s) 253, 318, 395, 1149, 1268, 1405
HspAI GCGC 3 cut(s) 164, 349, 497
Ksp22I TGATCA 1 cut(s) 816
Kzo9I GATC 4 cut(s) 816, 1126, 1336, 1569
LmnI GCTCC 3 cut(s) 306, 607, 1544
Lsp1109I GCAGC 9 cut(s) 64, 93, 169, 172, 506, 812, 815, 1048, 1051
LweI GCATC 2 cut(s) 880, 1351
MaeI CTAG 4 cut(s) 327, 911, 1055, 1097
MaeII ACGT 4 cut(s) 454, 565, 876, 1324
MaeIII GTNAC 6 cut(s) 331, 516, 551, 622, 872, 877
MalI GATC 4 cut(s) 818, 1128, 1338, 1571
MbiI CCGCTC 1 cut(s) 1547
MboI GATC 4 cut(s) 816, 1126, 1336, 1569
MboII GAAGA 2 cut(s) 265, 360
MfeI CAATTG 2 cut(s) 9, 157
MflI RGATCY 1 cut(s) 1336
MhlI GDGCHC 3 cut(s) 138, 612, 1509
MlyI GAGTC 2 cut(s) 95, 1565
MmeI TCCRAC 2 cut(s) 1314, 1353
MseI TTAA 5 cut(s) 506, 900, 1070, 1209, 1565
MslI CAYNNNNRTG 2 cut(s) 254, 447
MspA1I CMGCKG 3 cut(s) 488, 708, 806
MspR9I CCNGG 2 cut(s) 618, 853
MunI CAATTG 2 cut(s) 9, 157
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 2 cut(s) 618, 853
MvnI CGCG 2 cut(s) 32, 166
MwoI GCNNNNNNNGC 7 cut(s) 14, 77, 172, 494, 962, 1058, 1202
NdeI CATATG 2 cut(s) 295, 1170
NdeII GATC 4 cut(s) 816, 1126, 1336, 1569
NlaIII CATG 6 cut(s) 253, 318, 395, 1149, 1268, 1405
NlaIV GGNNCC 3 cut(s) 308, 609, 1462
NmuCI GTSAC 4 cut(s) 331, 551, 622, 872
PagI TCATGA 1 cut(s) 249
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 6 cut(s) 169, 415, 461, 482, 634, 1475
PflMI CCANNNNNTGG 1 cut(s) 858
PfoI TCCNGGA 1 cut(s) 616
PkrI GCNGC 9 cut(s) 79, 108, 184, 187, 496, 802, 805, 1063, 1066
PleI GAGTC 2 cut(s) 94, 1564
PmaCI CACGTG 1 cut(s) 455
PmlI CACGTG 1 cut(s) 455
PpsI GAGTC 2 cut(s) 94, 1564
Ppu21I YACGTR 2 cut(s) 455, 1325
PshAI GACNNNNGTC 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 616, 851
PspCI CACGTG 1 cut(s) 455
PspEI GGTNACC 1 cut(s) 331
PspGI CCWGG 2 cut(s) 616, 851
PspN4I GGNNCC 3 cut(s) 308, 609, 1462
PspPI GGNCC 1 cut(s) 1461
PstI CTGCAG 1 cut(s) 470
PstNI CAGNNNCTG 2 cut(s) 806, 1478
PsuI RGATCY 1 cut(s) 1336
PvuII CAGCTG 2 cut(s) 488, 806
RsaI GTAC 3 cut(s) 26, 292, 540
RsaNI GTAC 3 cut(s) 25, 291, 539
RseI CAYNNNNRTG 2 cut(s) 254, 447
SaqAI TTAA 5 cut(s) 506, 900, 1070, 1209, 1565
SatI GCNGC 9 cut(s) 78, 107, 183, 186, 495, 801, 804, 1062, 1065
Sau3AI GATC 4 cut(s) 816, 1126, 1336, 1569
Sau96I GGNCC 1 cut(s) 1461
SbfI CCTGCAGG 1 cut(s) 470
SchI GAGTC 2 cut(s) 95, 1565
ScrFI CCNGG 2 cut(s) 618, 853
SdaI CCTGCAGG 1 cut(s) 470
SduI GDGCHC 3 cut(s) 138, 612, 1509
SfaNI GCATC 2 cut(s) 880, 1351
SfcI CTRYAG 3 cut(s) 466, 663, 1258
SinI GGWCC 1 cut(s) 1461
SmiMI CAYNNNNRTG 2 cut(s) 254, 447
Sse8387I CCTGCAGG 1 cut(s) 470
SsiI CCGC 6 cut(s) 32, 166, 679, 706, 946, 1547
SspI AATATT 2 cut(s) 217, 1156
SspMI CTAG 4 cut(s) 327, 911, 1055, 1097
StyD4I CCNGG 2 cut(s) 616, 851
StyI CCWWGG 2 cut(s) 110, 1054
TaaI ACNGT 3 cut(s) 667, 692, 1248
TaiI ACGT 4 cut(s) 457, 568, 879, 1327
TaqI TCGA 3 cut(s) 84, 357, 1125
TatI WGTACW 1 cut(s) 290
TfiI GAWTC 6 cut(s) 169, 415, 461, 482, 634, 1475
Tru1I TTAA 5 cut(s) 506, 900, 1070, 1209, 1565
Tru9I TTAA 5 cut(s) 506, 900, 1070, 1209, 1565
TscAI CASTG 5 cut(s) 24, 132, 417, 967, 1462
TseFI GTSAC 4 cut(s) 331, 551, 622, 872
TseI GCWGC 9 cut(s) 77, 106, 182, 185, 494, 800, 803, 1061, 1064
Tsp45I GTSAC 4 cut(s) 331, 551, 622, 872
TspDTI ATGAA 6 cut(s) 266, 272, 303, 360, 407, 855
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 5 cut(s) 24, 132, 417, 967, 1462
Van91I CCANNNNNTGG 1 cut(s) 858
VpaK11BI GGWCC 1 cut(s) 1461
XapI RAATTY 2 cut(s) 735, 1024
XmaJI CCTAGG 1 cut(s) 1054
XspI CTAG 4 cut(s) 327, 911, 1055, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.