Rw0G001120

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00036
OG0000877
Physical Location & Seq
Forward (+)
104076 .. 118621
14546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001120.1

Sequence Viewer

Length: 2610 bp
ATGGAACCGGGCCAAAATAGCGGACTCGGTCCGTCCGGCAGATACCTCGAAGCCCTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAGCTCACCGATTCCGACTCGCTAGGCGACCACGACGGCGACCGAGTCTACTACGAGTTGCTCCGCCGCGTGGAGTCGTTCATAAGCGAAGAAGCTGAGGATAATGGGAAGGACCAGGCCTATAGAGTCGTCGTCGTACTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTTTGGAGGGGCTGCCAAGGTGTCCGTTGCCAGTGGAAGTGCCCTTATGTGATGAGTGGGACAGTTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCACTAGGGTCACCCTCCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTTTGTTTGACCTTTTGCATGTCTTCACAAGTGAAACTTTGAACCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACACTTGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCCTGCAGGTTGCATTTTGAATCAGCTGAAGCAGCGGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGGTTGAACCAAAGGCACAAATGGTACTTTTAGCAACTGCAACTTCGTCAGAGAGTGGGGCTCTCTGCTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCACGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATACATCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGACACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATCGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATATGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAATATGGTATGTATTGGGCTTCCTTTCAACTTTTTTACGCAAAAGAATTATTTGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTTTCAAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATTGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTACATGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATCACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGTAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGATCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGATAGTCCGAAGTGGAAATGGAGCAGATATTTGGGGCATGTATGCTAGATGGCAAAAAATGAAAGGAGACCTTGCGATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGAGCTGATTTGTGGAAAGATAGAGATCGGTTTAAAAAGTTTGCAAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCGTCTACTGGCAGCCGTGATGAACTTCTCTCAGCTGAAAGGCACCTAAGGAACATAATTAAACAGGCGGGGAGTTTCTCAGACATGGAAGAACTTCAACATCTTAAAGCCTGCCTTGATGAAGTGAAGTTAAATCTTGATTCTGATAGTGCATCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

869

Amino Acids

97.08

Weight (kDa)

5.37

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 729
AccB1I GGYRCC 1 cut(s) 2490
AccBSI CCGCTC 1 cut(s) 550
AccI GTMKAC 3 cut(s) 135, 1247, 2453
AccII CGCG 3 cut(s) 156, 352, 1129
AclWI GGATC 4 cut(s) 673, 1087, 1838, 2049
AcsI RAATTY 2 cut(s) 1440, 1741
AcuI CTGAAG 2 cut(s) 780, 1958
AcvI CACGTG 1 cut(s) 725
AdeI CACNNNGTG 1 cut(s) 1679
AfaI GTAC 4 cut(s) 225, 811, 846, 1054
AfiI CCNNNNNNNGG 7 cut(s) 157, 287, 1322, 1853, 1966, 2159, 2160
AflIII ACRYGT 2 cut(s) 724, 1250
AhdI GACNNNNNGTC 1 cut(s) 1254
AjnI CCWGG 5 cut(s) 201, 901, 1095, 1321, 2358
AleI CACNNNNGTG 1 cut(s) 2096
AloI GAACNNNNNNTCC 2 cut(s) 1392, 1424
Alw21I GWGCWC 1 cut(s) 1127
Alw26I GTCTC 3 cut(s) 682, 1671, 2304
AlwI GGATC 4 cut(s) 673, 1087, 1838, 2049
AlwNI CAGNNNCTG 3 cut(s) 770, 1511, 2180
Ama87I CYCGRG 3 cut(s) 1653, 1827, 2196
AoxI GGCC 4 cut(s) 10, 204, 904, 1734
ApoI RAATTY 2 cut(s) 1440, 1741
ArsI GACNNNNNNTTYG 2 cut(s) 1631, 1663
Asp700I GAANNNNTTC 1 cut(s) 2541
AspA2I CCTAGG 1 cut(s) 1771
AspLEI GCGC 2 cut(s) 352, 537
AspS9I GGNCC 6 cut(s) 10, 29, 199, 278, 905, 2163
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 6 cut(s) 49, 85, 511, 1409, 1601, 2106
AvaI CYCGRG 3 cut(s) 1653, 1827, 2196
AvaII GGWCC 4 cut(s) 29, 199, 278, 2163
AvrII CCTAGG 1 cut(s) 1771
AxyI CCTNAGG 1 cut(s) 2495
BaeGI GKGCMC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 2490
BanII GRGCYC 2 cut(s) 883, 1317
BauI CACGAG 1 cut(s) 965
BbrPI CACGTG 1 cut(s) 725
BbsI GAAGAC 3 cut(s) 76, 546, 574
Bbv12I GWGCWC 1 cut(s) 1127
BbvCI CCTCAGC 1 cut(s) 183
BccI CCATC 9 cut(s) 537, 700, 961, 1143, 1279, 1751, 1811, 2135, 2286
BceAI ACGGC 4 cut(s) 139, 221, 1051, 2448
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 5 cut(s) 203, 903, 1097, 1323, 2360
BciVI GTATCC 1 cut(s) 1761
BclI TGATCA 2 cut(s) 1521, 2206
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 3 cut(s) 682, 1671, 2304
BfaI CTAG 7 cut(s) 110, 513, 1628, 1772, 1814, 2018, 2289
BfmI CTRYAG 5 cut(s) 208, 736, 1368, 1483, 1975
BfuAI ACCTGC 1 cut(s) 729
BfuI GTATCC 1 cut(s) 1761
BglI GCCNNNNNGGC 1 cut(s) 1775
BlnI CCTAGG 1 cut(s) 1771
BlpI GCTNAGC 1 cut(s) 1659
Bme1390I CCNGG 6 cut(s) 9, 203, 903, 1097, 1323, 2360
Bme18I GGWCC 4 cut(s) 29, 199, 278, 2163
BmeRI GACNNNNNGTC 1 cut(s) 1254
BmeT110I CYCGRG 3 cut(s) 1653, 1827, 2196
BmgT120I GGNCC 6 cut(s) 10, 29, 199, 278, 905, 2163
BmiI GGNNCC 6 cut(s) 6, 494, 1161, 1314, 2164, 2492
BmrFI CCNGG 6 cut(s) 9, 203, 903, 1097, 1323, 2360
BmsI GCATC 4 cut(s) 958, 1205, 1597, 2056
BoxI GACNNNNGTC 1 cut(s) 674
BpiI GAAGAC 3 cut(s) 76, 546, 574
BplI GAGNNNNNCTC 2 cut(s) 865, 897
BpmI CTGGAG 2 cut(s) 1041, 1305
Bpu10I CCTNAGC 2 cut(s) 183, 2010
Bpu1102I GCTNAGC 1 cut(s) 1659
BpuMI CCSGG 1 cut(s) 9
BsaAI YACGTR 3 cut(s) 725, 1232, 1253
BsaBI GATNNNNATC 2 cut(s) 1361, 2385
BsaI GGTCTC 2 cut(s) 1671, 2304
BsaJI CCNNGG 5 cut(s) 296, 901, 1771, 2359, 2415
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 1419, 1449
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 287, 1322, 1853, 1966, 2159, 2160
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 311, 2461
Bse21I CCTNAGG 1 cut(s) 2495
Bse3DI GCAATG 4 cut(s) 231, 1737, 2008, 2136
Bse8I GATNNNNATC 2 cut(s) 1361, 2385
BseBI CCWGG 5 cut(s) 203, 903, 1097, 1323, 2360
BseDI CCNNGG 5 cut(s) 296, 901, 1771, 2359, 2415
BseGI GGATG 1 cut(s) 949
BseJI GATNNNNATC 2 cut(s) 1361, 2385
BseLI CCNNNNNNNGG 7 cut(s) 157, 287, 1322, 1853, 1966, 2159, 2160
BseMI GCAATG 4 cut(s) 231, 1737, 2008, 2136
BseMII CTCAG 9 cut(s) 174, 275, 693, 948, 1199, 2024, 2061, 2493, 2541
BseNI ACTGG 2 cut(s) 311, 2461
BseRI GAGGAG 2 cut(s) 515, 880
BseSI GKGCMC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 2344
Bsh1236I CGCG 3 cut(s) 156, 352, 1129
Bsh1285I CGRYCG 1 cut(s) 130
BshFI GGCC 4 cut(s) 12, 206, 906, 1736
BshNI GGYRCC 1 cut(s) 2490
BsiEI CGRYCG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 1127
BsiHKCI CYCGRG 3 cut(s) 1653, 1827, 2196
BsiSI CCGG 4 cut(s) 8, 36, 76, 276
BslFI GGGAC 3 cut(s) 353, 946, 2176
BslI CCNNNNNNNGG 7 cut(s) 157, 287, 1322, 1853, 1966, 2159, 2160
BsmAI GTCTC 3 cut(s) 682, 1671, 2304
BsmFI GGGAC 3 cut(s) 353, 946, 2176
BsmI GAATGC 2 cut(s) 537, 1038
BsnI GGCC 4 cut(s) 12, 206, 906, 1736
Bso31I GGTCTC 2 cut(s) 1671, 2304
BsoBI CYCGRG 3 cut(s) 1653, 1827, 2196
Bsp1286I GDGCHC 4 cut(s) 324, 883, 1127, 1317
Bsp143I GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
Bsp1720I GCTNAGC 1 cut(s) 1659
BspANI GGCC 4 cut(s) 12, 206, 906, 1736
BspCNI CTCAG 9 cut(s) 175, 274, 692, 949, 1198, 2023, 2062, 2492, 2540
BspFNI CGCG 3 cut(s) 156, 352, 1129
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 6 cut(s) 6, 494, 1161, 1314, 2164, 2492
BspMAI CTGCAG 1 cut(s) 740
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 4 cut(s) 673, 1087, 1838, 2049
BspQI GCTCTTC 1 cut(s) 1115
BspT107I GGYRCC 1 cut(s) 2490
BspTNI GGTCTC 2 cut(s) 1671, 2304
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 4 cut(s) 231, 1737, 2008, 2136
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 2 cut(s) 311, 2461
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 5 cut(s) 296, 901, 1771, 2359, 2415
BssMI GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
BssSI CACGAG 1 cut(s) 965
BssT1I CCWWGG 3 cut(s) 296, 1771, 2415
Bst2BI CACGAG 1 cut(s) 965
Bst2UI CCWGG 5 cut(s) 203, 903, 1097, 1323, 2360
Bst4CI ACNGT 3 cut(s) 344, 1372, 1965
Bst6I CTCTTC 2 cut(s) 1115, 1895
BstAPI GCANNNNNTGC 1 cut(s) 1679
BstBAI YACGTR 3 cut(s) 725, 1232, 1253
BstC8I GCNNGC 5 cut(s) 373, 1127, 1612, 1675, 2560
BstEII GGTNACC 1 cut(s) 517
BstF5I GGATG 1 cut(s) 949
BstFNI CGCG 3 cut(s) 156, 352, 1129
BstHHI GCGC 2 cut(s) 352, 537
BstKTI GATC 8 cut(s) 668, 1095, 1524, 1846, 2044, 2209, 2354, 2389
BstMAI GTCTC 3 cut(s) 682, 1671, 2304
BstMBI GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
BstMCI CGRYCG 1 cut(s) 130
BstMWI GCNNNNNNNGC 9 cut(s) 18, 242, 251, 358, 764, 1679, 1775, 1919, 2021
BstNI CCWGG 5 cut(s) 203, 903, 1097, 1323, 2360
BstNSI RCATGY 3 cut(s) 581, 1144, 2284
BstPAI GACNNNNGTC 1 cut(s) 674
BstPI GGTNACC 1 cut(s) 517
BstSCI CCNGG 6 cut(s) 7, 201, 901, 1095, 1321, 2358
BstSFI CTRYAG 5 cut(s) 208, 736, 1368, 1483, 1975
BstSLI GKGCMC 1 cut(s) 324
BstSNI TACGTA 1 cut(s) 1232
BstUI CGCG 3 cut(s) 156, 352, 1129
BstV2I GAAGAC 3 cut(s) 76, 546, 574
BstX2I RGATCY 1 cut(s) 2041
BstYI RGATCY 1 cut(s) 2041
Bsu36I CCTNAGG 1 cut(s) 2495
BsuI GTATCC 1 cut(s) 1761
BsuRI GGCC 4 cut(s) 12, 206, 906, 1736
BtgZI GCGATG 1 cut(s) 2333
BtsCI GGATG 1 cut(s) 949
BtsI GCAGTG 2 cut(s) 1095, 1684
BtsIMutI CAGTG 6 cut(s) 318, 687, 1095, 1684, 1934, 2164
BveI ACCTGC 1 cut(s) 729
Cac8I GCNNGC 5 cut(s) 373, 1127, 1612, 1675, 2560
CaiI CAGNNNCTG 3 cut(s) 770, 1511, 2180
CciI TCATGA 1 cut(s) 435
CfoI GCGC 2 cut(s) 352, 537
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 6 cut(s) 10, 29, 199, 278, 905, 2163
CpoI CGGWCCG 1 cut(s) 29
CseI GACGC 1 cut(s) 77
Csp6I GTAC 4 cut(s) 224, 810, 845, 1053
CspI CGGWCCG 1 cut(s) 29
CviQI GTAC 4 cut(s) 224, 810, 845, 1053
DpnI GATC 8 cut(s) 667, 1094, 1523, 1845, 2043, 2208, 2353, 2388
DpnII GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
DraI TTTAAA 1 cut(s) 2395
DraIII CACNNNGTG 1 cut(s) 1679
DriI GACNNNNNGTC 1 cut(s) 1254
Eam1104I CTCTTC 2 cut(s) 1115, 1895
Eam1105I GACNNNNNGTC 1 cut(s) 1254
EarI CTCTTC 2 cut(s) 1115, 1895
EciI GGCGGA 2 cut(s) 52, 140
Eco105I TACGTA 1 cut(s) 1232
Eco130I CCWWGG 3 cut(s) 296, 1771, 2415
Eco147I AGGCCT 1 cut(s) 206
Eco24I GRGCYC 2 cut(s) 883, 1317
Eco31I GGTCTC 2 cut(s) 1671, 2304
Eco47I GGWCC 4 cut(s) 29, 199, 278, 2163
Eco57I CTGAAG 2 cut(s) 780, 1958
Eco72I CACGTG 1 cut(s) 725
Eco81I CCTNAGG 1 cut(s) 2495
Eco88I CYCGRG 3 cut(s) 1653, 1827, 2196
Eco91I GGTNACC 1 cut(s) 517
EcoO65I GGTNACC 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 1741
EcoRII CCWGG 5 cut(s) 201, 901, 1095, 1321, 2358
EcoT14I CCWWGG 3 cut(s) 296, 1771, 2415
EcoT38I GRGCYC 2 cut(s) 883, 1317
ErhI CCWWGG 3 cut(s) 296, 1771, 2415
FaqI GGGAC 3 cut(s) 353, 946, 2176
FauI CCCGC 1 cut(s) 2509
FauNDI CATATG 2 cut(s) 481, 1887
FbaI TGATCA 2 cut(s) 1521, 2206
FblI GTMKAC 3 cut(s) 135, 1247, 2453
FokI GGATG 1 cut(s) 936
FriOI GRGCYC 2 cut(s) 883, 1317
FspBI CTAG 7 cut(s) 110, 513, 1628, 1772, 1814, 2018, 2289
GlaI GCGC 2 cut(s) 351, 536
GsuI CTGGAG 2 cut(s) 1041, 1305
HaeIII GGCC 4 cut(s) 12, 206, 906, 1736
HapII CCGG 4 cut(s) 8, 36, 76, 276
HgaI GACGC 1 cut(s) 77
HhaI GCGC 2 cut(s) 352, 537
Hin6I GCGC 2 cut(s) 350, 535
HinP1I GCGC 2 cut(s) 350, 535
HincII GTYRAC 1 cut(s) 1248
HindII GTYRAC 1 cut(s) 1248
HindIII AAGCTT 3 cut(s) 779, 1911, 2331
HpaII CCGG 4 cut(s) 8, 36, 76, 276
HphI GGTGA 6 cut(s) 49, 85, 511, 1409, 1601, 2106
Hpy166II GTNNAC 4 cut(s) 136, 1248, 1400, 2454
Hpy188III TCNNGA 9 cut(s) 436, 542, 692, 1020, 1754, 1847, 2018, 2198, 2585
Hpy8I GTNNAC 4 cut(s) 136, 1248, 1400, 2454
Hpy99I CGWCG 5 cut(s) 71, 125, 221, 224, 1215
HpyAV CCTTC 6 cut(s) 190, 455, 1118, 1381, 1801, 2026
HpyCH4III ACNGT 3 cut(s) 344, 1372, 1965
HpyCH4IV ACGT 6 cut(s) 614, 724, 1231, 1252, 1270, 1593
HpyF10VI GCNNNNNNNGC 9 cut(s) 18, 242, 251, 358, 764, 1679, 1775, 1919, 2021
HpySE526I ACGT 6 cut(s) 614, 724, 1231, 1252, 1270, 1593
HspAI GCGC 2 cut(s) 350, 535
Ksp22I TGATCA 2 cut(s) 1521, 2206
Kzo9I GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
LguI GCTCTTC 1 cut(s) 1115
LmnI GCTCC 7 cut(s) 153, 492, 893, 1165, 1312, 2264, 2363
LweI GCATC 4 cut(s) 958, 1205, 1597, 2056
MaeI CTAG 7 cut(s) 110, 513, 1628, 1772, 1814, 2018, 2289
MaeII ACGT 6 cut(s) 614, 724, 1231, 1252, 1270, 1593
MaeIII GTNAC 8 cut(s) 517, 625, 641, 787, 1256, 1589, 1594, 2144
MalI GATC 8 cut(s) 667, 1094, 1523, 1845, 2043, 2208, 2353, 2388
MbiI CCGCTC 1 cut(s) 550
MboI GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
MboII GAAGA 9 cut(s) 76, 188, 451, 546, 574, 1132, 1912, 2439, 2549
MfeI CAATTG 1 cut(s) 1176
MflI RGATCY 1 cut(s) 2041
MhlI GDGCHC 4 cut(s) 324, 883, 1127, 1317
MlyI GAGTC 8 cut(s) 18, 98, 141, 170, 222, 968, 982, 1253
MmeI TCCRAC 3 cut(s) 126, 597, 2019
MroXI GAANNNNTTC 1 cut(s) 2541
MseI TTAA 8 cut(s) 777, 1787, 2339, 2394, 2508, 2553, 2579, 2608
MslI CAYNNNNRTG 2 cut(s) 440, 2096
MspA1I CMGCKG 5 cut(s) 758, 767, 1413, 1511, 2483
MspI CCGG 4 cut(s) 8, 36, 76, 276
MspR9I CCNGG 6 cut(s) 9, 203, 903, 1097, 1323, 2360
MunI CAATTG 1 cut(s) 1176
Mva1269I GAATGC 2 cut(s) 537, 1038
MvaI CCWGG 5 cut(s) 203, 903, 1097, 1323, 2360
MvnI CGCG 3 cut(s) 156, 352, 1129
MwoI GCNNNNNNNGC 9 cut(s) 18, 242, 251, 358, 764, 1679, 1775, 1919, 2021
NciI CCSGG 1 cut(s) 9
NdeI CATATG 2 cut(s) 481, 1887
NdeII GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
NlaIV GGNNCC 6 cut(s) 6, 494, 1161, 1314, 2164, 2492
NmuCI GTSAC 3 cut(s) 517, 1256, 1589
NspI RCATGY 3 cut(s) 581, 1144, 2284
OliI CACNNNNGTG 1 cut(s) 2096
PagI TCATGA 1 cut(s) 435
PceI AGGCCT 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 1115
PctI GAATGC 2 cut(s) 537, 1038
PdmI GAANNNNTTC 1 cut(s) 2541
PflFI GACNNNGTC 2 cut(s) 27, 131
PfoI TCCNGGA 1 cut(s) 1321
PleI GAGTC 8 cut(s) 18, 98, 140, 169, 221, 967, 982, 1252
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 8 cut(s) 18, 98, 140, 169, 221, 967, 982, 1252
Ppu21I YACGTR 3 cut(s) 725, 1232, 1253
PshAI GACNNNNGTC 1 cut(s) 674
Psp6I CCWGG 5 cut(s) 201, 901, 1095, 1321, 2358
PspCI CACGTG 1 cut(s) 725
PspEI GGTNACC 1 cut(s) 517
PspGI CCWGG 5 cut(s) 201, 901, 1095, 1321, 2358
PspN4I GGNNCC 6 cut(s) 6, 494, 1161, 1314, 2164, 2492
PspPI GGNCC 6 cut(s) 10, 29, 199, 278, 905, 2163
PstI CTGCAG 1 cut(s) 740
PstNI CAGNNNCTG 3 cut(s) 770, 1511, 2180
PsuI RGATCY 1 cut(s) 2041
PsyI GACNNNGTC 2 cut(s) 27, 131
PvuII CAGCTG 3 cut(s) 758, 1511, 2483
RsaI GTAC 4 cut(s) 225, 811, 846, 1054
RsaNI GTAC 4 cut(s) 224, 810, 845, 1053
RseI CAYNNNNRTG 2 cut(s) 440, 2096
Rsr2I CGGWCCG 1 cut(s) 29
RsrII CGGWCCG 1 cut(s) 29
SalI GTCGAC 1 cut(s) 1246
SapI GCTCTTC 1 cut(s) 1115
SaqAI TTAA 8 cut(s) 777, 1787, 2339, 2394, 2508, 2553, 2579, 2608
Sau3AI GATC 8 cut(s) 665, 1092, 1521, 1843, 2041, 2206, 2351, 2386
Sau96I GGNCC 6 cut(s) 10, 29, 199, 278, 905, 2163
SbfI CCTGCAGG 1 cut(s) 740
SchI GAGTC 8 cut(s) 18, 98, 141, 170, 222, 968, 982, 1253
ScrFI CCNGG 6 cut(s) 9, 203, 903, 1097, 1323, 2360
SdaI CCTGCAGG 1 cut(s) 740
SduI GDGCHC 4 cut(s) 324, 883, 1127, 1317
SfaNI GCATC 4 cut(s) 958, 1205, 1597, 2056
SfcI CTRYAG 5 cut(s) 208, 736, 1368, 1483, 1975
SinI GGWCC 4 cut(s) 29, 199, 278, 2163
SmiMI CAYNNNNRTG 2 cut(s) 440, 2096
SnaBI TACGTA 1 cut(s) 1232
Sse8387I CCTGCAGG 1 cut(s) 740
SseBI AGGCCT 1 cut(s) 206
SspI AATATT 3 cut(s) 403, 1476, 1873
SspMI CTAG 7 cut(s) 110, 513, 1628, 1772, 1814, 2018, 2289
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 6 cut(s) 7, 201, 901, 1095, 1321, 2358
StyI CCWWGG 3 cut(s) 296, 1771, 2415
TaaI ACNGT 3 cut(s) 344, 1372, 1965
TaiI ACGT 6 cut(s) 617, 727, 1234, 1255, 1273, 1596
TaqI TCGA 5 cut(s) 48, 543, 668, 1170, 1247
TaqII GACCGA 2 cut(s) 17, 144
TauI GCSGC 2 cut(s) 156, 770
Tru1I TTAA 8 cut(s) 777, 1787, 2339, 2394, 2508, 2553, 2579, 2608
Tru9I TTAA 8 cut(s) 777, 1787, 2339, 2394, 2508, 2553, 2579, 2608
TscAI CASTG 6 cut(s) 318, 687, 1095, 1684, 1941, 2164
TseFI GTSAC 3 cut(s) 517, 1256, 1589
Tsp45I GTSAC 3 cut(s) 517, 1256, 1589
TspGWI ACGGA 3 cut(s) 21, 294, 797
TspRI CASTG 6 cut(s) 318, 687, 1095, 1684, 1941, 2164
Tth111I GACNNNGTC 2 cut(s) 27, 131
VpaK11BI GGWCC 4 cut(s) 29, 199, 278, 2163
XapI RAATTY 2 cut(s) 1440, 1741
XbaI TCTAGA 1 cut(s) 2017
XceI RCATGY 3 cut(s) 581, 1144, 2284
XmaJI CCTAGG 1 cut(s) 1771
XmiI GTMKAC 3 cut(s) 135, 1247, 2453
XmnI GAANNNNTTC 1 cut(s) 2541
XspI CTAG 7 cut(s) 110, 513, 1628, 1772, 1814, 2018, 2289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.