RchiOBHm_Chr1g0320041

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000877
Physical Location & Seq
Reverse (-)
7659531 .. 7666227
6697 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55022

Sequence Viewer

Length: 1344 bp
ATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCACTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGGTTCATTCACCTACAAGTCTATAATATGTGCATGAAAAAATTTAGAGCAAACCATATCACTTACTTGAAAAAGTTTTGTAGGTGTTCATTGGGTGACATTACTAATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTTTCAAACGATAGGTCGGCTCAGGCTAAGAGGTCTCTTGCACGCAGTGCATACAACAGGGGGCAATATAGAACATCAAAACTTCTATGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTTACAGGGGCTGTTCAGCTTGATCCAGAAAATGGGGAGGCACGGAATAATATTGCCTGTTTGCATATGATAAAAGGGAAGAGTAAGGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAGCTCGTTCCTTCTCCATTAATAAAACTACGAAACAGCTATCAACTGTGGGAGAACTACAGCCAAGTTGCTTTAGATGTTGGCAATGTTGCTCAGTCAAGTGCTTTCCTCCAAAGAACTGCACGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCCACTAATTCATCAATGACTGATGATGAAGATAACTTTCTCGTTAGTGGGACCACAAATGCAGCATCTGAGGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTATACAACAGATTACACTGGCAACGGATGTTATGGTTTTCTCTGTGAGACCTCTCAATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGAATGCTATAATCACATGGAGTATTTTCAGGGATCTGATTTGTGGAAAGATAGAGATCAGTTTAAAAAGTTTGTGAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCATCTACTGGCAGCCGTGATGAACTTCTCTCAGCTGATCGGCACCTATGGAACATAATGAAACAGGCAAGACTTGGCATTTCAGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

447

Amino Acids

50.77

Weight (kDa)

6.43

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1293
AccB7I CCANNNNNTGG 1 cut(s) 614
AciI CCGC 1 cut(s) 154
AclWI GGATC 3 cut(s) 599, 849, 1174
AcsI RAATTY 3 cut(s) 210, 296, 502
AcuI CTGAAG 1 cut(s) 719
AdeI CACNNNGTG 1 cut(s) 440
AfiI CCNNNNNNNGG 2 cut(s) 92, 614
AgsI TTSAA 5 cut(s) 325, 380, 399, 502, 706
AjnI CCWGG 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 1202, 1234
AloI GAACNNNNNNTCC 2 cut(s) 162, 194
AluBI AGCT 8 cut(s) 49, 601, 674, 709, 744, 1007, 1107, 1286
AluI AGCT 8 cut(s) 49, 601, 674, 709, 744, 1007, 1107, 1286
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 2 cut(s) 432, 1078
AlwI GGATC 3 cut(s) 599, 849, 1174
AlwNI CAGNNNCTG 2 cut(s) 593, 983
Ama87I CYCGRG 1 cut(s) 999
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 4 cut(s) 539, 542, 977, 1263
ApoI RAATTY 3 cut(s) 210, 296, 502
ArsI GACNNNNNNTTYG 2 cut(s) 392, 424
AseI ATTAAT 1 cut(s) 725
AspA2I CCTAGG 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 966
AsuHPI GGTGA 4 cut(s) 179, 257, 362, 906
AvaI CYCGRG 1 cut(s) 999
AvaII GGWCC 1 cut(s) 966
AvrII CCTAGG 1 cut(s) 532
BanI GGYRCC 1 cut(s) 1293
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 4 cut(s) 526, 529, 989, 1275
BccI CCATC 3 cut(s) 3, 512, 572
BceAI ACGGC 1 cut(s) 1251
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 522
BcoDI GTCTC 2 cut(s) 432, 1078
BfaI CTAG 3 cut(s) 389, 533, 575
BfmI CTRYAG 3 cut(s) 138, 253, 763
BfuI GTATCC 1 cut(s) 522
BglI GCCNNNNNGGC 1 cut(s) 536
BisI GCNGC 4 cut(s) 540, 543, 978, 1264
BlnI CCTAGG 1 cut(s) 532
BlpI GCTNAGC 1 cut(s) 1008
BlsI GCNGC 4 cut(s) 541, 544, 979, 1265
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 966
BmeT110I CYCGRG 1 cut(s) 999
BmgT120I GGNCC 1 cut(s) 966
BmiI GGNNCC 4 cut(s) 21, 84, 967, 1295
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 3 cut(s) 358, 856, 989
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 414
Bpu1102I GCTNAGC 1 cut(s) 1008
BsaBI GATNNNNATC 2 cut(s) 131, 1188
BsaI GGTCTC 2 cut(s) 432, 1078
BsaJI CCNNGG 3 cut(s) 532, 1027, 1218
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 614
Bse1I ACTGG 2 cut(s) 1059, 1264
Bse3DI GCAATG 3 cut(s) 498, 678, 796
Bse8I GATNNNNATC 2 cut(s) 131, 1188
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 3 cut(s) 532, 1027, 1218
BseGI GGATG 1 cut(s) 1069
BseJI GATNNNNATC 2 cut(s) 131, 1188
BseLI CCNNNNNNNGG 2 cut(s) 92, 614
BseMI GCAATG 3 cut(s) 498, 678, 796
BseMII CTCAG 7 cut(s) 59, 428, 812, 861, 975, 999, 1296
BseNI ACTGG 2 cut(s) 1059, 1264
BseXI GCAGC 4 cut(s) 526, 529, 989, 1275
BsgI GTGCAG 2 cut(s) 810, 1118
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 1293
BsiHKAI GWGCWC 1 cut(s) 1014
BsiHKCI CYCGRG 1 cut(s) 999
BslFI GGGAC 1 cut(s) 979
BslI CCNNNNNNNGG 2 cut(s) 92, 614
BsmAI GTCTC 2 cut(s) 432, 1078
BsmFI GGGAC 1 cut(s) 979
BsmI GAATGC 1 cut(s) 1142
BsnI GGCC 1 cut(s) 497
Bso31I GGTCTC 2 cut(s) 432, 1078
BsoBI CYCGRG 1 cut(s) 999
Bsp1286I GDGCHC 2 cut(s) 87, 1014
Bsp143I GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
Bsp1720I GCTNAGC 1 cut(s) 1008
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 7 cut(s) 58, 427, 811, 862, 976, 1000, 1295
BspLI GGNNCC 4 cut(s) 21, 84, 967, 1295
BspPI GGATC 3 cut(s) 599, 849, 1174
BspT107I GGYRCC 1 cut(s) 1293
BspTNI GGTCTC 2 cut(s) 432, 1078
BsrDI GCAATG 3 cut(s) 498, 678, 796
BsrI ACTGG 2 cut(s) 1059, 1264
BssECI CCNNGG 3 cut(s) 532, 1027, 1218
BssMI GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
BssT1I CCWWGG 3 cut(s) 532, 1027, 1218
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 4 cut(s) 142, 167, 185, 753
Bst6I CTCTTC 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 373, 436
BstDEI CTNAG 9 cut(s) 45, 414, 420, 798, 870, 984, 1008, 1015, 1282
BstF5I GGATG 1 cut(s) 1069
BstKTI GATC 6 cut(s) 607, 844, 1128, 1169, 1192, 1291
BstMAI GTCTC 2 cut(s) 432, 1078
BstMBI GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
BstMWI GCNNNNNNNGC 3 cut(s) 440, 536, 680
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 3 cut(s) 138, 253, 763
BstV1I GCAGC 4 cut(s) 526, 529, 989, 1275
BstX2I RGATCY 2 cut(s) 841, 1166
BstYI RGATCY 2 cut(s) 841, 1166
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 1 cut(s) 1069
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 4 cut(s) 181, 445, 695, 1052
Cac8I GCNNGC 2 cut(s) 373, 436
CaiI CAGNNNCTG 2 cut(s) 593, 983
Cfr13I GGNCC 1 cut(s) 966
CviAII CATG 3 cut(s) 289, 907, 1150
DdeI CTNAG 9 cut(s) 45, 414, 420, 798, 870, 984, 1008, 1015, 1282
DpnI GATC 6 cut(s) 606, 843, 1127, 1168, 1191, 1290
DpnII GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
DraI TTTAAA 1 cut(s) 1198
DraIII CACNNNGTG 1 cut(s) 440
Eam1104I CTCTTC 1 cut(s) 656
EarI CTCTTC 1 cut(s) 656
Eco130I CCWWGG 3 cut(s) 532, 1027, 1218
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 2 cut(s) 432, 1078
Eco47I GGWCC 1 cut(s) 966
Eco57I CTGAAG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 999
EcoRI GAATTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 532, 1027, 1218
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 532, 1027, 1218
FaeI CATG 3 cut(s) 292, 910, 1153
FalI AAGNNNNNCTT 2 cut(s) 895, 927
FaqI GGGAC 1 cut(s) 979
FatI CATG 3 cut(s) 288, 906, 1149
FauNDI CATATG 1 cut(s) 648
Fnu4HI GCNGC 4 cut(s) 540, 543, 978, 1264
FokI GGATG 1 cut(s) 1076
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 540, 543, 978, 1264
FspBI CTAG 3 cut(s) 389, 533, 575
GluI GCNGC 4 cut(s) 540, 543, 978, 1264
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 497
Hin1II CATG 3 cut(s) 292, 910, 1153
HindIII AAGCTT 2 cut(s) 672, 1105
HinfI GANTC 3 cut(s) 41, 109, 485
HphI GGTGA 4 cut(s) 179, 257, 362, 906
Hpy166II GTNNAC 2 cut(s) 170, 181
Hpy188I TCNGA 5 cut(s) 192, 985, 1125, 1171, 1336
Hpy188III TCNNGA 3 cut(s) 515, 608, 1001
Hpy8I GTNNAC 2 cut(s) 170, 181
HpyAV CCTTC 4 cut(s) 151, 562, 726, 826
HpyCH4III ACNGT 4 cut(s) 142, 167, 185, 753
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 536, 680
HpyF3I CTNAG 9 cut(s) 45, 414, 420, 798, 870, 984, 1008, 1015, 1282
Hsp92II CATG 3 cut(s) 292, 910, 1153
Kzo9I GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
LmnI GCTCC 2 cut(s) 25, 82
Lsp1109I GCAGC 4 cut(s) 526, 529, 989, 1275
LweI GCATC 3 cut(s) 358, 856, 989
MaeI CTAG 3 cut(s) 389, 533, 575
MaeIII GTNAC 1 cut(s) 350
MalI GATC 6 cut(s) 606, 843, 1127, 1168, 1191, 1290
MboI GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
MboII GAAGA 3 cut(s) 673, 956, 1242
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 2 cut(s) 841, 1166
MhlI GDGCHC 2 cut(s) 87, 1014
MluCI AATT 8 cut(s) 36, 210, 227, 296, 502, 861, 885, 922
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 1 cut(s) 819
MseI TTAA 5 cut(s) 548, 725, 1113, 1197, 1342
MspA1I CMGCKG 1 cut(s) 1286
MspR9I CCNGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 1142
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 440, 536, 680
NdeI CATATG 1 cut(s) 648
NdeII GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
NlaIII CATG 3 cut(s) 292, 910, 1153
NlaIV GGNNCC 4 cut(s) 21, 84, 967, 1295
NmuCI GTSAC 1 cut(s) 350
PctI GAATGC 1 cut(s) 1142
PfeI GAWTC 2 cut(s) 41, 109
PflMI CCANNNNNTGG 1 cut(s) 614
PfoI TCCNGGA 1 cut(s) 91
PkrI GCNGC 4 cut(s) 541, 544, 979, 1265
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 4 cut(s) 21, 84, 967, 1295
PspPI GGNCC 1 cut(s) 966
PstNI CAGNNNCTG 2 cut(s) 593, 983
PsuI RGATCY 2 cut(s) 841, 1166
PvuII CAGCTG 1 cut(s) 1286
SaqAI TTAA 5 cut(s) 548, 725, 1113, 1197, 1342
SatI GCNGC 4 cut(s) 540, 543, 978, 1264
Sau3AI GATC 6 cut(s) 604, 841, 1125, 1166, 1189, 1288
Sau96I GGNCC 1 cut(s) 966
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 2 cut(s) 87, 1014
SfaNI GCATC 3 cut(s) 358, 856, 989
SfcI CTRYAG 3 cut(s) 138, 253, 763
SinI GGWCC 1 cut(s) 966
Sse9I AATT 8 cut(s) 36, 210, 227, 296, 502, 861, 885, 922
SsiI CCGC 1 cut(s) 154
SspI AATATT 2 cut(s) 246, 634
SspMI CTAG 3 cut(s) 389, 533, 575
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 3 cut(s) 532, 1027, 1218
TaaI ACNGT 4 cut(s) 142, 167, 185, 753
TaqI TCGA 1 cut(s) 30
TasI AATT 8 cut(s) 36, 210, 227, 296, 502, 861, 885, 922
TfiI GAWTC 2 cut(s) 41, 109
Tru1I TTAA 5 cut(s) 548, 725, 1113, 1197, 1342
Tru9I TTAA 5 cut(s) 548, 725, 1113, 1197, 1342
TscAI CASTG 4 cut(s) 188, 445, 702, 1059
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 4 cut(s) 539, 542, 977, 1263
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 9 cut(s) 250, 305, 333, 667, 915, 957, 1242, 1287, 1325
TspGWI ACGGA 3 cut(s) 640, 844, 1076
TspRI CASTG 4 cut(s) 188, 445, 702, 1059
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 966
VspI ATTAAT 1 cut(s) 725
XapI RAATTY 3 cut(s) 210, 296, 502
XmaJI CCTAGG 1 cut(s) 532
XspI CTAG 3 cut(s) 389, 533, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.