Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000877

Physical Location & Seq

Genomic Coordinates Reverse (-)

8059062 .. 8061030

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG049500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTCTGAACCGTCGCCGGACCTCGCTATCCTCCGCCGCTACGAGCTCCGTCTCCTCCGCTGCACCTTCCTCTCTCCTCCTCCGCCGTCCGATCCTGAACAACCGTCCGATCAAACTTCGCCCACTCACCCCCTCTCCCCTCTAATCTCCGCCCTCCTCACTTCCATCGAGTCCGGCCGATACCTCGAAGCCCTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAACTCACCGATTCCGACTCGCTCGGCGACCACGACGCCGACCGAGTCTACTCCGAGTTGCTCCGCCGCGTGGAGTCGTTCATATGCGAAGAAGCTGATGATAATGGGAAGGACCAGGCCCATAGAGTCGTCGTCGTGCTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTTTGGAAGTGCCCTTATTTGATGAATGGGACAATTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTTGCTAGGGTCACCTTTCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTCTGTTCAACCTTTTGCATGTCTTTACAAGTGAAACTTTGAATCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACACTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

262

Amino Acids

29.42

Weight (kDa)

4.98

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17270 AT5G17270 AT5G37130
fragaria_vesca	FvH4_7g02460
malus_domestica	MD10G1031900.v1.1
prunus_persica	Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1
pyrus_communis	pycom10g02020
rosa_chinensis	RchiOBHm_Chr1g0319751 RchiOBHm_Chr1g0319761 RchiOBHm_Chr1g0319801 RchiOBHm_Chr1g0319811 RchiOBHm_Chr1g0319861 RchiOBHm_Chr1g0320041 RchiOBHm_Chr1g0320601 RchiOBHm_Chr1g0320761 RchiOBHm_Chr1g0320781 RchiOBHm_Chr1g0320901 RchiOBHm_Chr1g0320911 RchiOBHm_Chr1g0321111
rosa_laevigata	RLG00000030451 RLG00000030455 RLG00000030458
rosa_multiflora	Rmu_sc0001512.1_g000008 Rmu_sc0001722.1_g000001 Rmu_sc0002745.1_g000001 Rmu_sc0002745.1_g000003 Rmu_sc0003446.1_g000001 Rmu_sc0004660.1_g000001 Rmu_sc0004660.1_g000005 Rmu_sc0004820.1_g000017 Rmu_sc0004820.1_g000018 Rmu_sc0007977.1_g000013
rosa_roxburghii	Rroxscaffold_160G00433640 Rroxscaffold_160G00433720 Rroxscaffold_2G00104290 Rroxscaffold_4G00328090 Rroxscaffold_4G00328120
rosa_rugosa	Rorug01G0030000 Rorug01G0030900 Rorug01G0055500
rosa_samantha	Rh1AG042000 Rh1AG043000 Rh1BG039700 Rh1CG043000 Rh1CG044900 Rh1CG045000 Rh1CG045100 Rh1DG022800 Rh1DG026100 Rh1DG047800 Rh1DG048100 Rh1DG048200 Rh1DG048900 Rh1DG049000 Rh1DG049400 Rh1DG049500 Rh1DG049700
rosa_wichuraiana	Rw0G001090 Rw0G001120 Rw1G003620 Rw1G003650 Rw1G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	658
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	2 cut(s)	294, 460
AclWI	GGATC	2 cut(s)	86, 781
AcoI	YGGCCR	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	4 cut(s)	226, 569, 676, 709
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	4 cut(s)	46, 320, 380, 469
AluI	AGCT	4 cut(s)	46, 320, 380, 469
Alw21I	GWGCWC	2 cut(s)	48, 366
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	86, 781
AoxI	GGCC	2 cut(s)	175, 342
ApeKI	GCWGC	3 cut(s)	60, 380, 476
AspLEI	GCGC	2 cut(s)	460, 645
AspS9I	GGNCC	4 cut(s)	19, 337, 343, 416
AsuHPI	GGTGA	4 cut(s)	119, 187, 223, 619
AvaII	GGWCC	3 cut(s)	19, 337, 416
BaeGI	GKGCMC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	214, 654
Bbv12I	GWGCWC	2 cut(s)	48, 366
BbvI	GCAGC	3 cut(s)	47, 367, 463
BccI	CCATC	2 cut(s)	173, 645
BceAI	ACGGC	2 cut(s)	70, 359
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	621
BisI	GCNGC	5 cut(s)	37, 61, 292, 381, 477
BlsI	GCNGC	5 cut(s)	38, 62, 293, 382, 478
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	3 cut(s)	19, 337, 416
BmgT120I	GGNCC	4 cut(s)	19, 337, 343, 416
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	1 cut(s)	341
BoxI	GACNNNNGTC	1 cut(s)	782
BpiI	GAAGAC	2 cut(s)	214, 654
BsaHI	GRCGYC	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	4 cut(s)	44, 66, 69, 146
BseSI	GKGCMC	1 cut(s)	432
BseX3I	CGGCCG	1 cut(s)	175
BseXI	GCAGC	3 cut(s)	47, 367, 463
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	294, 460
Bsh1285I	CGRYCG	2 cut(s)	178, 268
BshFI	GGCC	2 cut(s)	177, 344
BsiEI	CGRYCG	2 cut(s)	178, 268
BsiHKAI	GWGCWC	2 cut(s)	48, 366
BsiSI	CCGG	4 cut(s)	17, 174, 214, 414
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	2 cut(s)	177, 344
Bsp1286I	GDGCHC	3 cut(s)	48, 366, 432
Bsp143I	GATC	3 cut(s)	91, 109, 773
BspANI	GGCC	2 cut(s)	177, 344
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	2 cut(s)	294, 460
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	86, 781
BsrBI	CCGCTC	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	213
BssMI	GATC	3 cut(s)	91, 109, 773
BssNI	GRCGYC	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	2 cut(s)	12, 105
BstACI	GRCGYC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	481, 618
BstDEI	CTNAG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	294, 460
BstHHI	GCGC	2 cut(s)	460, 645
BstKTI	GATC	3 cut(s)	94, 112, 776
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	3 cut(s)	91, 109, 773
BstMCI	CGRYCG	2 cut(s)	178, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 389, 466
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	689
BstPAI	GACNNNNGTC	1 cut(s)	782
BstPI	GGTNACC	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	2 cut(s)	294, 460
BstV1I	GCAGC	3 cut(s)	47, 367, 463
BstV2I	GAAGAC	2 cut(s)	214, 654
BstZI	CGGCCG	1 cut(s)	175
BsuRI	GGCC	2 cut(s)	177, 344
Cac8I	GCNNGC	2 cut(s)	481, 618
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	2 cut(s)	460, 645
Cfr10I	RCCGGY	1 cut(s)	213
Cfr13I	GGNCC	4 cut(s)	19, 337, 343, 416
CseI	GACGC	2 cut(s)	215, 269
CviAII	CATG	3 cut(s)	544, 609, 686
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	3 cut(s)	93, 111, 775
DpnII	GATC	3 cut(s)	91, 109, 773
EaeI	YGGCCR	1 cut(s)	175
EagI	CGGCCG	1 cut(s)	175
EciI	GGCGGA	5 cut(s)	23, 72, 139, 190, 278
Ecl136II	GAGCTC	1 cut(s)	46
EclXI	CGGCCG	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	3 cut(s)	19, 337, 416
Eco52I	CGGCCG	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	46
EcoO65I	GGTNACC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	3 cut(s)	547, 612, 689
FalI	AAGNNNNNCTT	4 cut(s)	565, 597, 688, 720
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	3 cut(s)	543, 608, 685
FauNDI	CATATG	2 cut(s)	308, 589
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	5 cut(s)	37, 61, 292, 381, 477
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	5 cut(s)	37, 61, 292, 381, 477
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	2 cut(s)	459, 644
GluI	GCNGC	5 cut(s)	37, 61, 292, 381, 477
HaeIII	GGCC	2 cut(s)	177, 344
HapII	CCGG	4 cut(s)	17, 174, 214, 414
HgaI	GACGC	2 cut(s)	215, 269
HhaI	GCGC	2 cut(s)	460, 645
Hin1I	GRCGYC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	547, 612, 689
Hin6I	GCGC	2 cut(s)	458, 643
HinP1I	GCGC	2 cut(s)	458, 643
HinfI	GANTC	8 cut(s)	170, 236, 242, 270, 299, 351, 463, 709
HpaII	CCGG	4 cut(s)	17, 174, 214, 414
HphI	GGTGA	4 cut(s)	119, 187, 223, 619
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	7 cut(s)	7, 91, 109, 241, 280, 487, 788
Hpy188III	TCNNGA	3 cut(s)	95, 544, 650
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	5 cut(s)	16, 209, 263, 359, 362
HpyAV	CCTTC	3 cut(s)	76, 328, 563
HpyCH4III	ACNGT	2 cut(s)	12, 105
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	5 cut(s)	63, 369, 530, 587, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 389, 466
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	722
Hsp92I	GRCGYC	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	547, 612, 689
HspAI	GCGC	2 cut(s)	458, 643
Kzo9I	GATC	3 cut(s)	91, 109, 773
LmnI	GCTCC	3 cut(s)	51, 291, 600
LpnPI	CCDG	8 cut(s)	30, 108, 187, 227, 326, 353, 427, 465
Lsp1109I	GCAGC	3 cut(s)	47, 367, 463
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	722
MaeIII	GTNAC	3 cut(s)	625, 733, 749
MalI	GATC	3 cut(s)	93, 111, 775
MbiI	CCGCTC	1 cut(s)	658
MboI	GATC	3 cut(s)	91, 109, 773
MboII	GAAGA	4 cut(s)	214, 326, 559, 654
MfeI	CAATTG	1 cut(s)	451
MhlI	GDGCHC	3 cut(s)	48, 366, 432
MluCI	AATT	3 cut(s)	451, 522, 594
MlyI	GAGTC	5 cut(s)	179, 236, 279, 308, 360
MmeI	TCCRAC	2 cut(s)	264, 705
MslI	CAYNNNNRTG	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	4 cut(s)	17, 174, 214, 414
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	451
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	2 cut(s)	294, 460
MwoI	GCNNNNNNNGC	3 cut(s)	380, 389, 466
NdeI	CATATG	2 cut(s)	308, 589
NdeII	GATC	3 cut(s)	91, 109, 773
NlaIII	CATG	3 cut(s)	547, 612, 689
NlaIV	GGNNCC	1 cut(s)	602
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	625
NspI	RCATGY	1 cut(s)	689
PagI	TCATGA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	645
PfeI	GAWTC	3 cut(s)	236, 463, 709
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	38, 62, 293, 382, 478
PleI	GAGTC	5 cut(s)	178, 236, 278, 307, 359
PpsI	GAGTC	5 cut(s)	178, 236, 278, 307, 359
PshAI	GACNNNNGTC	1 cut(s)	782
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	339
PspEI	GGTNACC	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	4 cut(s)	19, 337, 343, 416
PsyI	GACNNNGTC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	48
SatI	GCNGC	5 cut(s)	37, 61, 292, 381, 477
Sau3AI	GATC	3 cut(s)	91, 109, 773
Sau96I	GGNCC	4 cut(s)	19, 337, 343, 416
SchI	GAGTC	5 cut(s)	179, 236, 279, 308, 360
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	3 cut(s)	48, 366, 432
SinI	GGWCC	3 cut(s)	19, 337, 416
SmiMI	CAYNNNNRTG	1 cut(s)	548
Sse9I	AATT	3 cut(s)	451, 522, 594
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	621
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	12, 105
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	4 cut(s)	168, 186, 651, 776
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	451, 522, 594
TauI	GCSGC	2 cut(s)	39, 294
TfiI	GAWTC	3 cut(s)	236, 463, 709
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	3 cut(s)	60, 380, 476
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	6 cut(s)	295, 456, 560, 566, 597, 654
TspGWI	ACGGA	1 cut(s)	38
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	3 cut(s)	19, 337, 416
XceI	RCATGY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.