Rmu_sc0001512.1_g000008

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001512.1
OG0000877
Physical Location & Seq
Forward (+)
35386 .. 38608
3223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001512.1_g000008.1.cds

Sequence Viewer

Length: 576 bp
atggtggtctccaacgatggcaggagaaatggaagggagagagaacagagaattgagcgtgcggccgaggaagagagagagagaggttgggtttctagggcgtacaggattgctggcgtgctatcgatcctggttcggggattgcaaacaatctttcaatccctgctgtgtggccgatataggtctggccgaggtctcgaaacaactccgataaggctgaaatttggaggtcagatggaaaacacagagacgaacaactttgatgaagaaagggcagcagacatgcagcggtgctgcaggggcagcagggatgcgtgcacaggggcgcgtaggttacttaaaccctcaaaaccagttataatttcaatcacatattctttagaatgctataatcacatggagtattttcagggatctgatttgtggaaagatagagaccggtttaaaaagtttgcgaaatcctccttggaactctgcaaggtgtatatggagatttcttcatctactggcagccgtgatgaacttctctcagctgaaaggcacctaaggaacataatgaaacaggcaagatactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

191

Amino Acids

22.2

Weight (kDa)

9.55

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AccB1I GGYRCC 1 cut(s) 540
AccII CGCG 1 cut(s) 328
AciI CCGC 2 cut(s) 62, 289
AclWI GGATC 2 cut(s) 121, 421
AcoI YGGCCR 3 cut(s) 63, 172, 187
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 136
AgeI ACCGGT 1 cut(s) 438
AgsI TTSAA 2 cut(s) 158, 366
AjnI CCWGG 1 cut(s) 129
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AluBI AGCT 1 cut(s) 533
AluI AGCT 1 cut(s) 533
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 4 cut(s) 13, 200, 242, 429
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 2 cut(s) 121, 421
AoxI GGCC 3 cut(s) 63, 172, 187
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 5 cut(s) 275, 286, 294, 303, 510
ApoI RAATTY 1 cut(s) 221
AsiGI ACCGGT 1 cut(s) 438
AspLEI GCGC 1 cut(s) 328
AxyI CCTNAGG 1 cut(s) 545
BaeGI GKGCMC 1 cut(s) 320
BanI GGYRCC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 5 cut(s) 281, 287, 298, 315, 522
BccI CCATC 2 cut(s) 11, 229
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 4 cut(s) 13, 200, 242, 429
BfaI CTAG 2 cut(s) 96, 574
BfmI CTRYAG 1 cut(s) 295
BisI GCNGC 6 cut(s) 63, 276, 287, 295, 304, 511
BlsI GCNGC 6 cut(s) 64, 277, 288, 296, 305, 512
Bme1390I CCNGG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 542
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 125
BsaI GGTCTC 3 cut(s) 13, 200, 429
BsaJI CCNNGG 3 cut(s) 66, 190, 465
BsaWI WCCGGW 1 cut(s) 438
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 438
Bse1I ACTGG 2 cut(s) 353, 511
Bse21I CCTNAGG 1 cut(s) 545
BseBI CCWGG 1 cut(s) 131
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 3 cut(s) 66, 190, 465
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 2 cut(s) 353, 511
BseSI GKGCMC 1 cut(s) 320
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 5 cut(s) 281, 287, 298, 315, 522
Bsh1236I CGCG 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 65, 174, 189
BshNI GGYRCC 1 cut(s) 540
BshTI ACCGGT 1 cut(s) 438
BshVI ATCGAT 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 4 cut(s) 13, 200, 242, 429
BsmBI CGTCTC 1 cut(s) 242
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 3 cut(s) 65, 174, 189
Bso31I GGTCTC 3 cut(s) 13, 200, 429
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 126, 413
BspACI CCGC 2 cut(s) 62, 289
BspANI GGCC 3 cut(s) 65, 174, 189
BspCNI CTCAG 1 cut(s) 542
BspDI ATCGAT 1 cut(s) 125
BspFNI CGCG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 542
BspMAI CTGCAG 1 cut(s) 299
BspPI GGATC 2 cut(s) 121, 421
BspT107I GGYRCC 1 cut(s) 540
BspTNI GGTCTC 3 cut(s) 13, 200, 429
BsrFI RCCGGY 1 cut(s) 438
BsrI ACTGG 2 cut(s) 353, 511
BssAI RCCGGY 1 cut(s) 438
BssECI CCNNGG 3 cut(s) 66, 190, 465
BssMI GATC 2 cut(s) 126, 413
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 4 cut(s) 60, 115, 119, 316
BstDEI CTNAG 2 cut(s) 529, 545
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 129, 416
BstMAI GTCTC 4 cut(s) 13, 200, 242, 429
BstMBI GATC 2 cut(s) 126, 413
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 300, 303
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 5 cut(s) 281, 287, 298, 315, 522
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
BstZI CGGCCG 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 125
Bsu36I CCTNAGG 1 cut(s) 545
BsuRI GGCC 3 cut(s) 65, 174, 189
BsuTUI ATCGAT 1 cut(s) 125
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 4 cut(s) 60, 115, 119, 316
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 438
ClaI ATCGAT 1 cut(s) 125
Csp6I GTAC 1 cut(s) 103
CspAI ACCGGT 1 cut(s) 438
CviAII CATG 2 cut(s) 283, 397
CviJI RGCY 6 cut(s) 65, 174, 189, 217, 513, 533
CviKI_1 RGCY 6 cut(s) 65, 174, 189, 217, 513, 533
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 529, 545
DpnI GATC 2 cut(s) 128, 415
DpnII GATC 2 cut(s) 126, 413
DraI TTTAAA 1 cut(s) 445
EaeI YGGCCR 3 cut(s) 63, 172, 187
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 3 cut(s) 13, 200, 429
Eco52I CGGCCG 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 2 cut(s) 286, 400
FaiI YATR 9 cut(s) 180, 284, 359, 373, 390, 398, 486, 488, 554
FatI CATG 2 cut(s) 282, 396
Fnu4HI GCNGC 6 cut(s) 63, 276, 287, 295, 304, 511
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 6 cut(s) 63, 276, 287, 295, 304, 511
FspBI CTAG 2 cut(s) 96, 574
GlaI GCGC 1 cut(s) 327
GluI GCNGC 6 cut(s) 63, 276, 287, 295, 304, 511
HaeIII GGCC 3 cut(s) 65, 174, 189
HapII CCGG 1 cut(s) 439
HhaI GCGC 1 cut(s) 328
Hin1II CATG 2 cut(s) 286, 400
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HpaII CCGG 1 cut(s) 439
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 3 cut(s) 210, 234, 418
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 318
HpyAV CCTTC 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 145, 286, 297, 318, 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 303
HpyF3I CTNAG 2 cut(s) 529, 545
Hsp92II CATG 2 cut(s) 286, 400
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 2 cut(s) 126, 413
Lsp1109I GCAGC 5 cut(s) 281, 287, 298, 315, 522
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 96, 574
MaeIII GTNAC 1 cut(s) 333
MalI GATC 2 cut(s) 128, 415
MboI GATC 2 cut(s) 126, 413
MboII GAAGA 3 cut(s) 83, 278, 489
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 3 cut(s) 51, 221, 360
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 6 cut(s) 61, 77, 185, 221, 355, 472
MseI TTAA 2 cut(s) 339, 444
MspA1I CMGCKG 2 cut(s) 289, 533
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 2 cut(s) 300, 303
NdeII GATC 2 cut(s) 126, 413
NlaIII CATG 2 cut(s) 286, 400
NlaIV GGNNCC 1 cut(s) 542
NmeAIII GCCGAG 2 cut(s) 91, 215
NspI RCATGY 1 cut(s) 286
PctI GAATGC 1 cut(s) 389
PinAI ACCGGT 1 cut(s) 438
PkrI GCNGC 6 cut(s) 64, 277, 288, 296, 305, 512
PsiI TTATAA 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 542
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 339, 444
SatI GCNGC 6 cut(s) 63, 276, 287, 295, 304, 511
Sau3AI GATC 2 cut(s) 126, 413
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 320
SetI ASST 8 cut(s) 88, 185, 196, 232, 335, 483, 535, 546
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 295
Sse9I AATT 3 cut(s) 51, 221, 360
SsiI CCGC 2 cut(s) 62, 289
SspMI CTAG 2 cut(s) 96, 574
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 2 cut(s) 125, 198
TasI AATT 3 cut(s) 51, 221, 360
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 339, 444
Tru9I TTAA 2 cut(s) 339, 444
TseI GCWGC 5 cut(s) 275, 286, 294, 303, 510
TspDTI ATGAA 4 cut(s) 279, 489, 534, 572
VneI GTGCAC 1 cut(s) 316
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 286
XspI CTAG 2 cut(s) 96, 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.