Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000877

Physical Location & Seq

Genomic Coordinates Reverse (-)

8428524 .. 8434032

Gene Structure 5509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55100

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATATTTTCTGCTTTTCATTCAGTGCTCATCTTTCTTGTTTTCTAAATACATCCAGCTTGGGTGAATTATTTAAGTCTAAGAATCCCATTTTAATTAGTAGCTTAGAAATGTTAGAAGGCAACAACACAGGGTTTGAGGCAAGCTCTCTTAAGTACTTAAGAAGCTCTTTCTTATTGGCAAATGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTGTGGGGTTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAATCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACATGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTAAAAAAGCCCTAGAAGTTTCAAACGATAAGTCGGCTCGGGCTAAGTCTGAAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAATGATGGGGATATTGAGAAGTCACTAGATGGCTTCACTCGGGCTGTTCAGCTCGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATGGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTACGCGTAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGGTGCTTGAGGCCAGTTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_2 TPR_8

Protein Analysis

361

Amino Acids

39.88

Weight (kDa)

4.82

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17270 AT5G17270 AT5G37130
fragaria_vesca	FvH4_7g02460
malus_domestica	MD10G1031900.v1.1
prunus_persica	Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1 Prupe.2G030300_v2.0.a1
pyrus_communis	pycom10g02020
rosa_chinensis	RchiOBHm_Chr1g0319751 RchiOBHm_Chr1g0319761 RchiOBHm_Chr1g0319801 RchiOBHm_Chr1g0319811 RchiOBHm_Chr1g0319861 RchiOBHm_Chr1g0320041 RchiOBHm_Chr1g0320601 RchiOBHm_Chr1g0320761 RchiOBHm_Chr1g0320781 RchiOBHm_Chr1g0320901 RchiOBHm_Chr1g0320911 RchiOBHm_Chr1g0321111
rosa_laevigata	RLG00000030451 RLG00000030455 RLG00000030458
rosa_multiflora	Rmu_sc0001512.1_g000008 Rmu_sc0001722.1_g000001 Rmu_sc0002745.1_g000001 Rmu_sc0002745.1_g000003 Rmu_sc0003446.1_g000001 Rmu_sc0004660.1_g000001 Rmu_sc0004660.1_g000005 Rmu_sc0004820.1_g000017 Rmu_sc0004820.1_g000018 Rmu_sc0007977.1_g000013
rosa_roxburghii	Rroxscaffold_160G00433640 Rroxscaffold_160G00433720 Rroxscaffold_2G00104290 Rroxscaffold_4G00328090 Rroxscaffold_4G00328120
rosa_rugosa	Rorug01G0030000 Rorug01G0030900 Rorug01G0055500
rosa_samantha	Rh1AG042000 Rh1AG043000 Rh1BG039700 Rh1CG043000 Rh1CG044900 Rh1CG045000 Rh1CG045100 Rh1DG022800 Rh1DG026100 Rh1DG047800 Rh1DG048100 Rh1DG048200 Rh1DG048900 Rh1DG049000 Rh1DG049400 Rh1DG049500 Rh1DG049700
rosa_wichuraiana	Rw0G001090 Rw0G001120 Rw1G003620 Rw1G003650 Rw1G003770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccII	CGCG	1 cut(s)	844
AciI	CCGC	2 cut(s)	274, 301
AclWI	GGATC	2 cut(s)	653, 864
AcsI	RAATTY	2 cut(s)	330, 556
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	6 cut(s)	212, 453, 668, 781, 977, 978
AflII	CTTAAG	2 cut(s)	152, 160
AflIII	ACRYGT	1 cut(s)	842
AgsI	TTSAA	4 cut(s)	407, 516, 556, 760
AjnI	CCWGG	2 cut(s)	211, 446
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
Alw21I	GWGCWC	2 cut(s)	31, 1029
AlwI	GGATC	2 cut(s)	653, 864
AlwNI	CAGNNNCTG	2 cut(s)	401, 998
Ama87I	CYCGRG	3 cut(s)	531, 642, 1014
AoxI	GGCC	2 cut(s)	549, 1071
ApeKI	GCWGC	4 cut(s)	395, 398, 593, 596
ApoI	RAATTY	2 cut(s)	330, 556
ArsI	GACNNNNNNTTYG	2 cut(s)	509, 541
AspA2I	CCTAGG	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	981
AsuHPI	GGTGA	4 cut(s)	77, 299, 479, 921
AvaI	CYCGRG	3 cut(s)	531, 642, 1014
AvaII	GGWCC	1 cut(s)	981
AvrII	CCTAGG	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	31, 1029
BbvI	GCAGC	4 cut(s)	407, 410, 580, 583
BccI	CCATC	4 cut(s)	566, 602, 626, 950
BciT130I	CCWGG	2 cut(s)	213, 448
BciVI	GTATCC	1 cut(s)	576
BclI	TGATCA	1 cut(s)	411
BfaI	CTAG	4 cut(s)	506, 587, 629, 833
BfmI	CTRYAG	3 cut(s)	258, 373, 790
BfrI	CTTAAG	2 cut(s)	152, 160
BfuI	GTATCC	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	4 cut(s)	396, 399, 594, 597
BlnI	CCTAGG	1 cut(s)	586
BlpI	GCTNAGC	1 cut(s)	1023
BlsI	GCNGC	4 cut(s)	397, 400, 595, 598
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	213, 448
Bme18I	GGWCC	1 cut(s)	981
BmeT110I	CYCGRG	3 cut(s)	531, 642, 1014
BmgT120I	GGNCC	1 cut(s)	981
BmiI	GGNNCC	2 cut(s)	204, 982
BmrFI	CCNGG	2 cut(s)	213, 448
BmsI	GCATC	2 cut(s)	475, 871
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	825
Bpu1102I	GCTNAGC	1 cut(s)	1023
BsaJI	CCNNGG	2 cut(s)	446, 586
Bsc4I	CCNNNNNNNGG	6 cut(s)	212, 453, 668, 781, 977, 978
Bse1I	ACTGG	1 cut(s)	1074
Bse3DI	GCAATG	2 cut(s)	823, 951
BseBI	CCWGG	2 cut(s)	213, 448
BseDI	CCNNGG	2 cut(s)	446, 586
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	6 cut(s)	212, 453, 668, 781, 977, 978
BseMI	GCAATG	2 cut(s)	823, 951
BseMII	CTCAG	3 cut(s)	839, 876, 1014
BseNI	ACTGG	1 cut(s)	1074
BseXI	GCAGC	4 cut(s)	407, 410, 580, 583
Bsh1236I	CGCG	1 cut(s)	844
BshFI	GGCC	2 cut(s)	551, 1073
BsiHKAI	GWGCWC	2 cut(s)	31, 1029
BsiHKCI	CYCGRG	3 cut(s)	531, 642, 1014
BslFI	GGGAC	1 cut(s)	994
BslI	CCNNNNNNNGG	6 cut(s)	212, 453, 668, 781, 977, 978
BsmFI	GGGAC	1 cut(s)	994
BsnI	GGCC	2 cut(s)	551, 1073
BsoBI	CYCGRG	3 cut(s)	531, 642, 1014
Bsp1286I	GDGCHC	3 cut(s)	31, 207, 1029
Bsp143I	GATC	3 cut(s)	411, 658, 856
Bsp1720I	GCTNAGC	1 cut(s)	1023
BspACI	CCGC	2 cut(s)	274, 301
BspANI	GGCC	2 cut(s)	551, 1073
BspCNI	CTCAG	3 cut(s)	838, 877, 1015
BspFNI	CGCG	1 cut(s)	844
BspLI	GGNNCC	2 cut(s)	204, 982
BspPI	GGATC	2 cut(s)	653, 864
BspTI	CTTAAG	2 cut(s)	152, 160
BsrDI	GCAATG	2 cut(s)	823, 951
BsrI	ACTGG	1 cut(s)	1074
BssECI	CCNNGG	2 cut(s)	446, 586
BssMI	GATC	3 cut(s)	411, 658, 856
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	2 cut(s)	213, 448
Bst4CI	ACNGT	3 cut(s)	262, 287, 780
Bst6I	CTCTTC	1 cut(s)	710
BstAFI	CTTAAG	2 cut(s)	152, 160
BstC8I	GCNNGC	2 cut(s)	145, 490
BstDEI	CTNAG	7 cut(s)	81, 106, 537, 825, 885, 1023, 1030
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	844
BstKTI	GATC	3 cut(s)	414, 661, 859
BstMBI	GATC	3 cut(s)	411, 658, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	590, 734, 836
BstNI	CCWGG	2 cut(s)	213, 448
BstSCI	CCNGG	2 cut(s)	211, 446
BstSFI	CTRYAG	3 cut(s)	258, 373, 790
BstUI	CGCG	1 cut(s)	844
BstV1I	GCAGC	4 cut(s)	407, 410, 580, 583
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	551, 1073
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	31, 749, 982
Cac8I	GCNNGC	2 cut(s)	145, 490
CaiI	CAGNNNCTG	2 cut(s)	401, 998
Cfr13I	GGNCC	1 cut(s)	981
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	4 cut(s)	420, 678, 797, 922
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	7 cut(s)	81, 106, 537, 825, 885, 1023, 1030
DpnI	GATC	3 cut(s)	413, 660, 858
DpnII	GATC	3 cut(s)	411, 658, 856
DraI	TTTAAA	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	981
Eco57I	CTGAAG	1 cut(s)	773
Eco88I	CYCGRG	3 cut(s)	531, 642, 1014
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	211, 446
EcoT14I	CCWWGG	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	586
FaeI	CATG	4 cut(s)	423, 681, 800, 925
FalI	AAGNNNNNCTT	4 cut(s)	154, 186, 910, 942
FaqI	GGGAC	1 cut(s)	994
FatI	CATG	4 cut(s)	419, 677, 796, 921
FauNDI	CATATG	1 cut(s)	702
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	396, 399, 594, 597
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	4 cut(s)	396, 399, 594, 597
FspBI	CTAG	4 cut(s)	506, 587, 629, 833
GluI	GCNGC	4 cut(s)	396, 399, 594, 597
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	551, 1073
Hin1II	CATG	4 cut(s)	423, 681, 800, 925
HindIII	AAGCTT	1 cut(s)	726
HinfI	GANTC	3 cut(s)	85, 229, 995
HphI	GGTGA	4 cut(s)	77, 299, 479, 921
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	4 cut(s)	312, 430, 544, 1000
Hpy188III	TCNNGA	5 cut(s)	415, 569, 662, 833, 1016
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	113, 271
HpyCH4III	ACNGT	3 cut(s)	262, 287, 780
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	3 cut(s)	599, 700, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	590, 734, 836
HpyF3I	CTNAG	7 cut(s)	81, 106, 537, 825, 885, 1023, 1030
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	423, 681, 800, 925
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	3 cut(s)	411, 658, 856
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	4 cut(s)	407, 410, 580, 583
LweI	GCATC	2 cut(s)	475, 871
MaeI	CTAG	4 cut(s)	506, 587, 629, 833
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	3 cut(s)	467, 472, 624
MalI	GATC	3 cut(s)	413, 660, 858
MboI	GATC	3 cut(s)	411, 658, 856
MboII	GAAGA	1 cut(s)	727
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	3 cut(s)	31, 207, 1029
MluCI	AATT	8 cut(s)	68, 96, 330, 347, 556, 876, 900, 937
MluI	ACGCGT	1 cut(s)	842
MmeI	TCCRAC	2 cut(s)	834, 873
MnlI	CCTC	7 cut(s)	133, 217, 313, 331, 667, 904, 1063
MseI	TTAA	6 cut(s)	75, 95, 153, 161, 495, 602
MspA1I	CMGCKG	2 cut(s)	303, 401
MspCI	CTTAAG	2 cut(s)	152, 160
MspR9I	CCNGG	2 cut(s)	213, 448
MvaI	CCWGG	2 cut(s)	213, 448
MvnI	CGCG	1 cut(s)	844
MwoI	GCNNNNNNNGC	3 cut(s)	590, 734, 836
NdeI	CATATG	1 cut(s)	702
NdeII	GATC	3 cut(s)	411, 658, 856
NlaIII	CATG	4 cut(s)	423, 681, 800, 925
NlaIV	GGNNCC	2 cut(s)	204, 982
NmuCI	GTSAC	2 cut(s)	467, 624
PfeI	GAWTC	3 cut(s)	85, 229, 995
PflMI	CCANNNNNTGG	1 cut(s)	453
PfoI	TCCNGGA	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	397, 400, 595, 598
Psp6I	CCWGG	2 cut(s)	211, 446
PspGI	CCWGG	2 cut(s)	211, 446
PspN4I	GGNNCC	2 cut(s)	204, 982
PspPI	GGNCC	1 cut(s)	981
PstNI	CAGNNNCTG	2 cut(s)	401, 998
PsuI	RGATCY	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	6 cut(s)	75, 95, 153, 161, 495, 602
SatI	GCNGC	4 cut(s)	396, 399, 594, 597
Sau3AI	GATC	3 cut(s)	411, 658, 856
Sau96I	GGNCC	1 cut(s)	981
ScaI	AGTACT	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	213, 448
SduI	GDGCHC	3 cut(s)	31, 207, 1029
SfaNI	GCATC	2 cut(s)	475, 871
SfcI	CTRYAG	3 cut(s)	258, 373, 790
SinI	GGWCC	1 cut(s)	981
SmlI	CTYRAG	3 cut(s)	152, 160, 1067
SmoI	CTYRAG	3 cut(s)	152, 160, 1067
Sse9I	AATT	8 cut(s)	68, 96, 330, 347, 556, 876, 900, 937
SsiI	CCGC	2 cut(s)	274, 301
SspI	AATATT	2 cut(s)	366, 688
SspMI	CTAG	4 cut(s)	506, 587, 629, 833
StyD4I	CCNGG	2 cut(s)	211, 446
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	262, 287, 780
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	1 cut(s)	657
TasI	AATT	8 cut(s)	68, 96, 330, 347, 556, 876, 900, 937
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	3 cut(s)	85, 229, 995
Tru1I	TTAA	6 cut(s)	75, 95, 153, 161, 495, 602
Tru9I	TTAA	6 cut(s)	75, 95, 153, 161, 495, 602
TscAI	CASTG	3 cut(s)	31, 756, 982
TseFI	GTSAC	2 cut(s)	467, 624
TseI	GCWGC	4 cut(s)	395, 398, 593, 596
Tsp45I	GTSAC	2 cut(s)	467, 624
TspDTI	ATGAA	2 cut(s)	9, 450
TspRI	CASTG	3 cut(s)	31, 756, 982
Van91I	CCANNNNNTGG	1 cut(s)	453
Vha464I	CTTAAG	2 cut(s)	152, 160
VpaK11BI	GGWCC	1 cut(s)	981
XapI	RAATTY	2 cut(s)	330, 556
XbaI	TCTAGA	1 cut(s)	832
XmaJI	CCTAGG	1 cut(s)	586
XspI	CTAG	4 cut(s)	506, 587, 629, 833
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.