Rh1DG026100

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Forward (+)
4047008 .. 4049639
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG026100.1

Sequence Viewer

Length: 825 bp
ATGGCTACTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCGCTAGGGTCACCTTTCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTCTGTTCAACCTTTTGCATGTCTTTACAAGTGAAACTTTGAATCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACACTCGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCATGCAGGTTGCATTTTGAATCAGCTGAAGCAGCAGCTGGTGTTAAGCTTTCAGTTACCGGGGTTCTTGGCTTCCGTACCATACATCAGGTTGAACCAAAGGCACAAATGGTACTTTTAGCAAACACAACTTCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACAATTCTATTGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCAGCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

274

Amino Acids

30.29

Weight (kDa)

5.8

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 366
AccBSI CCGCTC 1 cut(s) 187
AccII CGCG 1 cut(s) 766
AciI CCGC 1 cut(s) 187
AclWI GGATC 2 cut(s) 310, 724
AcuI CTGAAG 1 cut(s) 417
AcvI CACGTG 1 cut(s) 362
AfaI GTAC 3 cut(s) 448, 483, 691
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 6 cut(s) 98, 205, 238, 389, 464, 680
AjnI CCWGG 2 cut(s) 538, 732
AluBI AGCT 4 cut(s) 335, 395, 407, 418
AluI AGCT 4 cut(s) 335, 395, 407, 418
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 2 cut(s) 310, 724
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 1 cut(s) 541
ApeKI GCWGC 3 cut(s) 401, 404, 695
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 542
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 148
BanII GRGCYC 1 cut(s) 520
BbrPI CACGTG 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 3 cut(s) 413, 416, 682
BccI CCATC 4 cut(s) 174, 337, 598, 780
BceAI ACGGC 1 cut(s) 688
BciT130I CCWGG 2 cut(s) 540, 734
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 366
BisI GCNGC 3 cut(s) 402, 405, 696
BlsI GCNGC 3 cut(s) 403, 406, 697
Bme1390I CCNGG 3 cut(s) 430, 540, 734
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 2 cut(s) 131, 798
BmrFI CCNGG 3 cut(s) 430, 540, 734
BmsI GCATC 1 cut(s) 595
BoxI GACNNNNGTC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 1 cut(s) 678
BpuMI CCSGG 1 cut(s) 430
BsaAI YACGTR 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 429, 538
Bse1I ACTGG 1 cut(s) 13
BseBI CCWGG 2 cut(s) 540, 734
BseDI CCNNGG 2 cut(s) 429, 538
BseGI GGATG 1 cut(s) 586
BseMII CTCAG 2 cut(s) 330, 585
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 3 cut(s) 413, 416, 682
Bsh1236I CGCG 1 cut(s) 766
BshFI GGCC 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 764
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 583
BsmI GAATGC 2 cut(s) 174, 675
BsnI GGCC 1 cut(s) 543
Bsp1286I GDGCHC 2 cut(s) 520, 764
Bsp143I GATC 2 cut(s) 302, 729
BspACI CCGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 543
BspCNI CTCAG 2 cut(s) 329, 586
BspFNI CGCG 1 cut(s) 766
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 131, 798
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 2 cut(s) 310, 724
BspQI GCTCTTC 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 429, 538
BssMI GATC 2 cut(s) 302, 729
Bst2UI CCWGG 2 cut(s) 540, 734
Bst6I CTCTTC 1 cut(s) 752
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 147, 723, 764
BstDEI CTNAG 3 cut(s) 316, 582, 594
BstEII GGTNACC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 586
BstFNI CGCG 1 cut(s) 766
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 305, 732
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 2 cut(s) 302, 729
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 2 cut(s) 540, 734
BstNSI RCATGY 2 cut(s) 218, 781
BstPAI GACNNNNGTC 1 cut(s) 311
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 3 cut(s) 428, 538, 732
BstUI CGCG 1 cut(s) 766
BstV1I GCAGC 3 cut(s) 413, 416, 682
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 543
BtsCI GGATG 1 cut(s) 586
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 2 cut(s) 324, 732
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 3 cut(s) 147, 723, 764
CaiI CAGNNNCTG 1 cut(s) 407
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 3 cut(s) 447, 482, 690
CviAII CATG 7 cut(s) 73, 138, 215, 372, 602, 770, 778
CviQI GTAC 3 cut(s) 447, 482, 690
DdeI CTNAG 3 cut(s) 316, 582, 594
DpnI GATC 2 cut(s) 304, 731
DpnII GATC 2 cut(s) 302, 729
Eam1104I CTCTTC 1 cut(s) 752
EarI CTCTTC 1 cut(s) 752
Eco24I GRGCYC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 417
Eco72I CACGTG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 538, 732
EcoT38I GRGCYC 1 cut(s) 520
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 7 cut(s) 76, 141, 218, 375, 605, 773, 781
FalI AAGNNNNNCTT 4 cut(s) 94, 126, 217, 249
FaqI GGGAC 1 cut(s) 583
FatI CATG 7 cut(s) 72, 137, 214, 371, 601, 769, 777
FauNDI CATATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 402, 405, 696
FokI GGATG 1 cut(s) 573
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 3 cut(s) 402, 405, 696
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 173
GluI GCNGC 3 cut(s) 402, 405, 696
GsuI CTGGAG 1 cut(s) 678
HaeIII GGCC 1 cut(s) 543
HapII CCGG 1 cut(s) 429
HhaI GCGC 1 cut(s) 174
Hin1II CATG 7 cut(s) 76, 141, 218, 375, 605, 773, 781
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 7 cut(s) 238, 322, 368, 389, 596, 625, 653
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 5 cut(s) 16, 532, 595, 613, 670
Hpy188III TCNNGA 4 cut(s) 73, 179, 329, 657
HpyAV CCTTC 2 cut(s) 92, 755
HpyCH4IV ACGT 2 cut(s) 251, 361
HpyCH4V TGCA 8 cut(s) 59, 116, 214, 359, 375, 382, 713, 781
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 3 cut(s) 316, 582, 594
HpySE526I ACGT 2 cut(s) 251, 361
Hsp92II CATG 7 cut(s) 76, 141, 218, 375, 605, 773, 781
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 302, 729
LguI GCTCTTC 1 cut(s) 752
LmnI GCTCC 2 cut(s) 129, 802
Lsp1109I GCAGC 3 cut(s) 413, 416, 682
LweI GCATC 1 cut(s) 595
MaeI CTAG 1 cut(s) 150
MaeII ACGT 2 cut(s) 251, 361
MaeIII GTNAC 4 cut(s) 154, 262, 278, 424
MalI GATC 2 cut(s) 304, 731
MbiI CCGCTC 1 cut(s) 187
MboI GATC 2 cut(s) 302, 729
MboII GAAGA 3 cut(s) 88, 183, 769
MfeI CAATTG 1 cut(s) 813
MhlI GDGCHC 2 cut(s) 520, 764
MluCI AATT 5 cut(s) 51, 123, 556, 750, 813
MlyI GAGTC 2 cut(s) 605, 619
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 5 cut(s) 292, 538, 555, 598, 802
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 77
MspA1I CMGCKG 2 cut(s) 395, 407
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 3 cut(s) 430, 540, 734
MunI CAATTG 1 cut(s) 813
Mva1269I GAATGC 2 cut(s) 174, 675
MvaI CCWGG 2 cut(s) 540, 734
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 1 cut(s) 401
NciI CCSGG 1 cut(s) 430
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 302, 729
NlaIII CATG 7 cut(s) 76, 141, 218, 375, 605, 773, 781
NlaIV GGNNCC 2 cut(s) 131, 798
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 2 cut(s) 218, 781
PagI TCATGA 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 752
PctI GAATGC 2 cut(s) 174, 675
PfeI GAWTC 5 cut(s) 238, 322, 368, 389, 653
PkrI GCNGC 3 cut(s) 403, 406, 697
PleI GAGTC 2 cut(s) 604, 619
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 2 cut(s) 604, 619
Ppu21I YACGTR 1 cut(s) 362
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 538, 732
PspCI CACGTG 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 538, 732
PspN4I GGNNCC 2 cut(s) 131, 798
PspPI GGNCC 1 cut(s) 542
PstNI CAGNNNCTG 1 cut(s) 407
PvuII CAGCTG 2 cut(s) 395, 407
RsaI GTAC 3 cut(s) 448, 483, 691
RsaNI GTAC 3 cut(s) 447, 482, 690
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 752
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 3 cut(s) 402, 405, 696
Sau3AI GATC 2 cut(s) 302, 729
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 2 cut(s) 605, 619
ScrFI CCNGG 3 cut(s) 430, 540, 734
SduI GDGCHC 2 cut(s) 520, 764
SfaNI GCATC 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 5 cut(s) 51, 123, 556, 750, 813
SsiI CCGC 1 cut(s) 187
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 428, 538, 732
TaiI ACGT 2 cut(s) 254, 364
TaqI TCGA 3 cut(s) 180, 305, 807
TasI AATT 5 cut(s) 51, 123, 556, 750, 813
TfiI GAWTC 5 cut(s) 238, 322, 368, 389, 653
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 324, 732
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 3 cut(s) 401, 404, 695
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 7 cut(s) 89, 95, 126, 183, 314, 360, 492
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 2 cut(s) 324, 732
XceI RCATGY 2 cut(s) 218, 781
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.