RchiOBHm_Chr1g0319811

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000877
Physical Location & Seq
Reverse (-)
7451702 .. 7454867
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55002

Sequence Viewer

Length: 1071 bp
ATGAATTTTCCTGCTATCATTGTACCTTCCATCGAGTCCGGCCGATACCTCGAAGCCTTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAACTCACCGATTCCGACTCACTCGGCGACCACGACGCCGACCGAGTCTACTCCGAGTTGCTCCGCCGCGTGGAGTCGTTCATATGCGAAGAAGCTGAGGATAATGGGAAGGACCAGGCCTATAGAGTCGTCGTCATACTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACCGGATGGGAGTATTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCGCTAGGGTCACCTTTCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTCTGTTCAACCTTTTGCATGTCTTTACAAGTGAAACTTTGAATCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACACTCGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCATGCAGGTTGCATTTTGAATCAGCCGAAGCAGCAGCTGGTGTTAAGCTTTCAGTTACCGGGGTTCTTGGCTTCCGTACCATACATCAGGTTGAACCAAAGGCACAAATGGTACTTTTAGCAAACACAACTTCATCAAAGAGTGGGGCTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACAATTCTATTGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGAGTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCAGCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

356

Amino Acids

39.45

Weight (kDa)

5.18

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 612
AccBSI CCGCTC 1 cut(s) 433
AccI GTMKAC 1 cut(s) 138
AccII CGCG 2 cut(s) 159, 1012
AciI CCGC 4 cut(s) 66, 154, 157, 433
AclWI GGATC 2 cut(s) 556, 970
AcoI YGGCCR 1 cut(s) 40
AcsI RAATTY 1 cut(s) 4
AcvI CACGTG 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 4 cut(s) 24, 694, 729, 937
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 7 cut(s) 91, 344, 451, 484, 635, 710, 926
AjnI CCWGG 3 cut(s) 204, 784, 978
AluBI AGCT 5 cut(s) 185, 245, 581, 653, 664
AluI AGCT 5 cut(s) 185, 245, 581, 653, 664
Alw21I GWGCWC 1 cut(s) 1010
Alw26I GTCTC 1 cut(s) 565
AlwI GGATC 2 cut(s) 556, 970
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 3 cut(s) 40, 207, 787
ApeKI GCWGC 4 cut(s) 245, 647, 650, 941
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 202, 788
AsuC2I CCSGG 1 cut(s) 676
AsuHPI GGTGA 3 cut(s) 52, 88, 394
AvaII GGWCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 766
BbrPI CACGTG 1 cut(s) 608
BbsI GAAGAC 2 cut(s) 79, 429
Bbv12I GWGCWC 1 cut(s) 1010
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 232, 659, 662, 928
BccI CCATC 6 cut(s) 38, 276, 420, 583, 844, 1026
BceAI ACGGC 2 cut(s) 224, 934
BciT130I CCWGG 3 cut(s) 206, 786, 980
BcnI CCSGG 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 565
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 612
BisI GCNGC 5 cut(s) 157, 246, 648, 651, 942
BlsI GCNGC 5 cut(s) 158, 247, 649, 652, 943
Bme1390I CCNGG 4 cut(s) 206, 676, 786, 980
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 202, 788
BmiI GGNNCC 2 cut(s) 377, 1044
BmrFI CCNGG 4 cut(s) 206, 676, 786, 980
BmsI GCATC 1 cut(s) 841
BoxI GACNNNNGTC 1 cut(s) 557
BpiI GAAGAC 2 cut(s) 79, 429
BplI GAGNNNNNCTC 2 cut(s) 748, 780
BpmI CTGGAG 1 cut(s) 924
Bpu10I CCTNAGC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 676
BsaAI YACGTR 1 cut(s) 608
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 675, 784
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 3 cut(s) 206, 786, 980
BseDI CCNNGG 2 cut(s) 675, 784
BseGI GGATG 2 cut(s) 287, 832
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 4 cut(s) 177, 278, 576, 831
BseX3I CGGCCG 1 cut(s) 40
BseXI GCAGC 4 cut(s) 232, 659, 662, 928
Bsh1236I CGCG 2 cut(s) 159, 1012
Bsh1285I CGRYCG 2 cut(s) 43, 133
BshFI GGCC 3 cut(s) 42, 209, 789
BsiEI CGRYCG 2 cut(s) 43, 133
BsiHKAI GWGCWC 1 cut(s) 1010
BsiSI CCGG 4 cut(s) 39, 79, 279, 675
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 565
BsmBI CGTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 829
BsmI GAATGC 2 cut(s) 420, 921
BsnI GGCC 3 cut(s) 42, 209, 789
Bsp1286I GDGCHC 2 cut(s) 766, 1010
Bsp143I GATC 2 cut(s) 548, 975
BspACI CCGC 4 cut(s) 66, 154, 157, 433
BspANI GGCC 3 cut(s) 42, 209, 789
BspCNI CTCAG 4 cut(s) 178, 277, 575, 832
BspFNI CGCG 2 cut(s) 159, 1012
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 377, 1044
BspMI ACCTGC 1 cut(s) 612
BspPI GGATC 2 cut(s) 556, 970
BspQI GCTCTTC 1 cut(s) 998
BsrBI CCGCTC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 675, 784
BssMI GATC 2 cut(s) 548, 975
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 3 cut(s) 206, 786, 980
Bst6I CTCTTC 1 cut(s) 998
BstACI GRCGYC 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 3 cut(s) 393, 969, 1010
BstDEI CTNAG 6 cut(s) 186, 264, 562, 828, 840, 1068
BstEII GGTNACC 1 cut(s) 400
BstF5I GGATG 2 cut(s) 287, 832
BstFNI CGCG 2 cut(s) 159, 1012
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 2 cut(s) 551, 978
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 2 cut(s) 548, 975
BstMCI CGRYCG 2 cut(s) 43, 133
BstMWI GCNNNNNNNGC 3 cut(s) 245, 254, 647
BstNI CCWGG 3 cut(s) 206, 786, 980
BstNSI RCATGY 2 cut(s) 464, 1027
BstPAI GACNNNNGTC 1 cut(s) 557
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 4 cut(s) 204, 674, 784, 978
BstSFI CTRYAG 1 cut(s) 211
BstUI CGCG 2 cut(s) 159, 1012
BstV1I GCAGC 4 cut(s) 232, 659, 662, 928
BstV2I GAAGAC 2 cut(s) 79, 429
BstZI CGGCCG 1 cut(s) 40
BsuRI GGCC 3 cut(s) 42, 209, 789
BtsCI GGATG 2 cut(s) 287, 832
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 2 cut(s) 570, 978
BveI ACCTGC 1 cut(s) 612
Cac8I GCNNGC 3 cut(s) 393, 969, 1010
CaiI CAGNNNCTG 1 cut(s) 653
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 420
Cfr10I RCCGGY 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 202, 788
CseI GACGC 2 cut(s) 80, 134
Csp6I GTAC 4 cut(s) 23, 693, 728, 936
CviAII CATG 7 cut(s) 319, 384, 461, 618, 848, 1016, 1024
CviQI GTAC 4 cut(s) 23, 693, 728, 936
DdeI CTNAG 6 cut(s) 186, 264, 562, 828, 840, 1068
DpnI GATC 2 cut(s) 550, 977
DpnII GATC 2 cut(s) 548, 975
EaeI YGGCCR 1 cut(s) 40
EagI CGGCCG 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 998
EarI CTCTTC 1 cut(s) 998
EciI GGCGGA 2 cut(s) 55, 143
EclXI CGGCCG 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 202
Eco52I CGGCCG 1 cut(s) 40
Eco72I CACGTG 1 cut(s) 608
Eco91I GGTNACC 1 cut(s) 400
EcoO65I GGTNACC 1 cut(s) 400
EcoRII CCWGG 3 cut(s) 204, 784, 978
EcoT38I GRGCYC 1 cut(s) 766
Esp3I CGTCTC 1 cut(s) 565
FaeI CATG 7 cut(s) 322, 387, 464, 621, 851, 1019, 1027
FalI AAGNNNNNCTT 4 cut(s) 340, 372, 463, 495
FaqI GGGAC 1 cut(s) 829
FatI CATG 7 cut(s) 318, 383, 460, 617, 847, 1015, 1023
FauNDI CATATG 2 cut(s) 173, 364
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 5 cut(s) 157, 246, 648, 651, 942
FokI GGATG 2 cut(s) 294, 819
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 5 cut(s) 157, 246, 648, 651, 942
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 419
GluI GCNGC 5 cut(s) 157, 246, 648, 651, 942
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 3 cut(s) 42, 209, 789
HapII CCGG 4 cut(s) 39, 79, 279, 675
HgaI GACGC 2 cut(s) 80, 134
HhaI GCGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 7 cut(s) 322, 387, 464, 621, 851, 1019, 1027
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 662
HpaII CCGG 4 cut(s) 39, 79, 279, 675
HphI GGTGA 3 cut(s) 52, 88, 394
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 6 cut(s) 106, 145, 778, 841, 859, 916
Hpy188III TCNNGA 4 cut(s) 319, 425, 575, 903
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 3 cut(s) 74, 128, 224
HpyAV CCTTC 5 cut(s) 36, 67, 193, 338, 1001
HpyCH4IV ACGT 2 cut(s) 497, 607
HpyCH4V TGCA 9 cut(s) 234, 305, 362, 460, 605, 621, 628, 959, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 254, 647
HpyF3I CTNAG 6 cut(s) 186, 264, 562, 828, 840, 1068
HpySE526I ACGT 2 cut(s) 497, 607
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 7 cut(s) 322, 387, 464, 621, 851, 1019, 1027
HspAI GCGC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 548, 975
LguI GCTCTTC 1 cut(s) 998
LmnI GCTCC 3 cut(s) 156, 375, 1048
Lsp1109I GCAGC 4 cut(s) 232, 659, 662, 928
LweI GCATC 1 cut(s) 841
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 497, 607
MaeIII GTNAC 4 cut(s) 400, 508, 524, 670
MalI GATC 2 cut(s) 550, 977
MbiI CCGCTC 1 cut(s) 433
MboI GATC 2 cut(s) 548, 975
MboII GAAGA 5 cut(s) 79, 191, 334, 429, 1015
MfeI CAATTG 1 cut(s) 1059
MhlI GDGCHC 2 cut(s) 766, 1010
MluCI AATT 6 cut(s) 4, 297, 369, 802, 996, 1059
MlyI GAGTC 8 cut(s) 44, 101, 144, 173, 225, 851, 865, 908
MmeI TCCRAC 2 cut(s) 129, 480
MnlI CCTC 8 cut(s) 59, 73, 181, 538, 784, 801, 844, 1048
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 4 cut(s) 39, 79, 279, 675
MspR9I CCNGG 4 cut(s) 206, 676, 786, 980
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 2 cut(s) 420, 921
MvaI CCWGG 3 cut(s) 206, 786, 980
MvnI CGCG 2 cut(s) 159, 1012
MwoI GCNNNNNNNGC 3 cut(s) 245, 254, 647
NciI CCSGG 1 cut(s) 676
NdeI CATATG 2 cut(s) 173, 364
NdeII GATC 2 cut(s) 548, 975
NlaIII CATG 7 cut(s) 322, 387, 464, 621, 851, 1019, 1027
NlaIV GGNNCC 2 cut(s) 377, 1044
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 2 cut(s) 464, 1027
PagI TCATGA 1 cut(s) 318
PceI AGGCCT 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 998
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 2 cut(s) 420, 921
PfeI GAWTC 6 cut(s) 101, 484, 568, 614, 635, 1064
PflFI GACNNNGTC 1 cut(s) 134
PkrI GCNGC 5 cut(s) 158, 247, 649, 652, 943
PleI GAGTC 8 cut(s) 43, 101, 143, 172, 224, 850, 865, 907
PmaCI CACGTG 1 cut(s) 608
PmlI CACGTG 1 cut(s) 608
PpsI GAGTC 8 cut(s) 43, 101, 143, 172, 224, 850, 865, 907
Ppu21I YACGTR 1 cut(s) 608
PshAI GACNNNNGTC 1 cut(s) 557
Psp6I CCWGG 3 cut(s) 204, 784, 978
PspCI CACGTG 1 cut(s) 608
PspEI GGTNACC 1 cut(s) 400
PspGI CCWGG 3 cut(s) 204, 784, 978
PspN4I GGNNCC 2 cut(s) 377, 1044
PspPI GGNCC 2 cut(s) 202, 788
PstNI CAGNNNCTG 1 cut(s) 653
PsyI GACNNNGTC 1 cut(s) 134
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 4 cut(s) 24, 694, 729, 937
RsaNI GTAC 4 cut(s) 23, 693, 728, 936
RseI CAYNNNNRTG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 998
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 5 cut(s) 157, 246, 648, 651, 942
Sau3AI GATC 2 cut(s) 548, 975
Sau96I GGNCC 2 cut(s) 202, 788
SchI GAGTC 8 cut(s) 44, 101, 144, 173, 225, 851, 865, 908
ScrFI CCNGG 4 cut(s) 206, 676, 786, 980
SduI GDGCHC 2 cut(s) 766, 1010
SfaNI GCATC 1 cut(s) 841
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 6 cut(s) 4, 297, 369, 802, 996, 1059
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 4 cut(s) 66, 154, 157, 433
SspMI CTAG 1 cut(s) 396
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 4 cut(s) 204, 674, 784, 978
TaiI ACGT 2 cut(s) 500, 610
TaqI TCGA 5 cut(s) 33, 51, 426, 551, 1053
TaqII GACCGA 1 cut(s) 147
TasI AATT 6 cut(s) 4, 297, 369, 802, 996, 1059
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 6 cut(s) 101, 484, 568, 614, 635, 1064
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 2 cut(s) 570, 978
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 4 cut(s) 245, 647, 650, 941
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 9 cut(s) 17, 160, 335, 341, 372, 429, 560, 606, 738
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 2 cut(s) 570, 978
Tth111I GACNNNGTC 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 4
XceI RCATGY 2 cut(s) 464, 1027
XmiI GTMKAC 1 cut(s) 138
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.