RchiOBHm_Chr1g0320781

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000877
Physical Location & Seq
Reverse (-)
8343755 .. 8348162
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55090

Sequence Viewer

Length: 876 bp
ATGCAGAGATGGGAAATGGCTTCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCTGCTATGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAATATGGTTCATTCACTACAAATCTATAATATGTGCATGAAAAAATTTAGAGCAAACCATATCGTTTACTTGAAAAAGTTTTGTAGGTGTTCATTGGGTGACATTACTAATGATGATGCCTGCTTTGAAAAAGCCCCAGAAGTTTCAAACGATAGGTCGGCTCGGGCTAAGAGGTCTCTTGCACGCAGTGCATACAACAGGGGGCAATATAGAACATCAAAACTTCTGTGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTTGATCCAGAAAATGGGGAGGCACGGAATAATATTGCCTGTTTGCATATGATAAAAGGGAAGAGTAAGGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAGCTCACGAAACTAAAGAATTTTGTAATAGTAATTGACTTCAATCTATTTTACATTGTGCCAAGTCTTACAACATATATACAGTTTACATATGATACGATCCACTATTCTAGGACCTATTCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

291

Amino Acids

33.39

Weight (kDa)

8.6

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 656
AciI CCGC 1 cut(s) 154
AclWI GGATC 2 cut(s) 641, 841
AcsI RAATTY 4 cut(s) 210, 338, 544, 766
AcuI CTGAAG 1 cut(s) 761
AdeI CACNNNGTG 1 cut(s) 482
AfiI CCNNNNNNNGG 3 cut(s) 92, 656, 870
AgsI TTSAA 7 cut(s) 287, 367, 422, 441, 544, 748, 790
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 5 cut(s) 49, 281, 643, 716, 751
AluI AGCT 5 cut(s) 49, 281, 643, 716, 751
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 2 cut(s) 641, 841
AlwNI CAGNNNCTG 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 456
AoxI GGCC 1 cut(s) 537
ApeKI GCWGC 4 cut(s) 275, 278, 581, 584
ApoI RAATTY 4 cut(s) 210, 338, 544, 766
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AspA2I CCTAGG 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 861
AsuHPI GGTGA 2 cut(s) 179, 404
AvaI CYCGRG 1 cut(s) 456
AvaII GGWCC 1 cut(s) 861
AvrII CCTAGG 1 cut(s) 574
BanII GRGCYC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 287, 290, 568, 571
BccI CCATC 3 cut(s) 3, 554, 614
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 564
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 4 cut(s) 575, 617, 858, 870
BfmI CTRYAG 2 cut(s) 138, 253
BfuI GTATCC 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 578
BisI GCNGC 4 cut(s) 276, 279, 582, 585
BlnI CCTAGG 1 cut(s) 574
BlsI GCNGC 4 cut(s) 277, 280, 583, 586
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 861
BmeT110I CYCGRG 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 861
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 1 cut(s) 400
BpmI CTGGAG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 574
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 656, 870
Bse3DI GCAATG 2 cut(s) 540, 720
Bse8I GATNNNNATC 1 cut(s) 131
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 574
BseJI GATNNNNATC 1 cut(s) 131
BseLI CCNNNNNNNGG 3 cut(s) 92, 656, 870
BseMI GCAATG 2 cut(s) 540, 720
BseMII CTCAG 1 cut(s) 59
BseXI GCAGC 4 cut(s) 287, 290, 568, 571
BshFI GGCC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 92, 656, 870
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 1 cut(s) 539
Bso31I GGTCTC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 3 cut(s) 291, 646, 846
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 539
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 2 cut(s) 641, 841
BspTNI GGTCTC 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 540, 720
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 3 cut(s) 291, 646, 846
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 142, 167, 831
Bst6I CTCTTC 1 cut(s) 698
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 415, 478
BstDEI CTNAG 2 cut(s) 45, 462
BstENI CCTNNNNNAGG 1 cut(s) 868
BstKTI GATC 3 cut(s) 294, 649, 849
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 3 cut(s) 291, 646, 846
BstMWI GCNNNNNNNGC 3 cut(s) 482, 578, 722
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 2 cut(s) 138, 253
BstV1I GCAGC 4 cut(s) 287, 290, 568, 571
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 1 cut(s) 539
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 2 cut(s) 487, 737
Cac8I GCNNGC 2 cut(s) 415, 478
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 861
CviAII CATG 1 cut(s) 331
DdeI CTNAG 2 cut(s) 45, 462
DpnI GATC 3 cut(s) 293, 648, 848
DpnII GATC 3 cut(s) 291, 646, 846
DraIII CACNNNGTG 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 574
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 861
Eco57I CTGAAG 1 cut(s) 761
Eco88I CYCGRG 1 cut(s) 456
EcoNI CCTNNNNNAGG 1 cut(s) 868
EcoO109I RGGNCCY 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 1 cut(s) 334
FatI CATG 1 cut(s) 330
FauNDI CATATG 2 cut(s) 690, 838
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 276, 279, 582, 585
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 276, 279, 582, 585
FspBI CTAG 4 cut(s) 575, 617, 858, 870
GluI GCNGC 4 cut(s) 276, 279, 582, 585
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 1 cut(s) 539
Hin1II CATG 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 714
HinfI GANTC 3 cut(s) 41, 109, 527
HphI GGTGA 2 cut(s) 179, 404
Hpy166II GTNNAC 3 cut(s) 170, 361, 834
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 3 cut(s) 557, 650, 754
Hpy8I GTNNAC 3 cut(s) 170, 361, 834
HpyAV CCTTC 2 cut(s) 151, 604
HpyCH4III ACNGT 3 cut(s) 142, 167, 831
HpyCH4V TGCA 8 cut(s) 4, 330, 476, 485, 533, 587, 688, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 578, 722
HpyF3I CTNAG 2 cut(s) 45, 462
Hsp92II CATG 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 3 cut(s) 291, 646, 846
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 4 cut(s) 287, 290, 568, 571
LweI GCATC 1 cut(s) 400
MaeI CTAG 4 cut(s) 575, 617, 858, 870
MaeIII GTNAC 1 cut(s) 392
MalI GATC 3 cut(s) 293, 648, 848
MboI GATC 3 cut(s) 291, 646, 846
MboII GAAGA 1 cut(s) 715
MfeI CAATTG 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 7 cut(s) 36, 210, 227, 338, 544, 766, 780
MlyI GAGTC 1 cut(s) 536
MnlI CCTC 6 cut(s) 25, 97, 193, 211, 459, 655
MseI TTAA 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 93
MunI CAATTG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 482, 578, 722
NdeI CATATG 2 cut(s) 690, 838
NdeII GATC 3 cut(s) 291, 646, 846
NlaIII CATG 1 cut(s) 334
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 41, 109
PflMI CCANNNNNTGG 1 cut(s) 656
PfoI TCCNGGA 1 cut(s) 91
PkrI GCNGC 4 cut(s) 277, 280, 583, 586
PleI GAGTC 1 cut(s) 535
PpsI GAGTC 1 cut(s) 535
PpuMI RGGWCCY 1 cut(s) 861
Psp5II RGGWCCY 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 861
PspPPI RGGWCCY 1 cut(s) 861
PstNI CAGNNNCTG 1 cut(s) 281
PvuII CAGCTG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 4 cut(s) 276, 279, 582, 585
Sau3AI GATC 3 cut(s) 291, 646, 846
Sau96I GGNCC 1 cut(s) 861
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 2 cut(s) 138, 253
SinI GGWCC 1 cut(s) 861
Sse9I AATT 7 cut(s) 36, 210, 227, 338, 544, 766, 780
SsiI CCGC 1 cut(s) 154
SspI AATATT 2 cut(s) 246, 676
SspMI CTAG 4 cut(s) 575, 617, 858, 870
StyD4I CCNGG 1 cut(s) 91
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 3 cut(s) 142, 167, 831
TaqI TCGA 1 cut(s) 30
TasI AATT 7 cut(s) 36, 210, 227, 338, 544, 766, 780
TfiI GAWTC 2 cut(s) 41, 109
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 2 cut(s) 487, 744
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 4 cut(s) 275, 278, 581, 584
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 5 cut(s) 12, 293, 347, 375, 709
TspGWI ACGGA 1 cut(s) 682
TspRI CASTG 2 cut(s) 487, 744
Van91I CCANNNNNTGG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 861
XagI CCTNNNNNAGG 1 cut(s) 868
XapI RAATTY 4 cut(s) 210, 338, 544, 766
XmaJI CCTAGG 1 cut(s) 574
XspI CTAG 4 cut(s) 575, 617, 858, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.