Rroxscaffold_160G00433720

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000160
OG0000877
Physical Location & Seq
Reverse (-)
164148 .. 196086
31939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_160G00433720.1

Sequence Viewer

Length: 2385 bp
ATGTCTGAACCGTCACCGGACCTCGCTATCCTCCGCGGCTACGAGCTCCGTCTCCTCCGCTGCACCTTCCTCTCTCCTCCTCCGCCGTCCGATCCTGAACAACCGTCCGATCAAACCTCGCCCACTCACCCCCTCTCCCCTCTAATCTCCGCCCTCCTCACTTCCATCGAGTCCGGCCGATACCTCGACGCCCTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAACTCACCGATTCCGACTCGCTCGGCGACCACGACGCCGACCGAGTCTACTCCGAGTTGCTCCGCCGCGTAGAGTCGTTCATATGCGAAGAAGCTGAGGATAATGGCAAGGATCAGGCCTATAGAGTCGTCGTCGTGCTCTGCATTGCCGTAGCTGCGTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTTTGGAGGGGCTGCCAAGGTGTCCGTTGCCAATGGAAGTGCCCTTATGTGATGAATGGGACAATTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCGCTAGGGTCACCTTTCTCCATCAGCACATTCTCGATGAGCGATCTTCATCTCTGTTCGACCTTTTGCATGTCTTTACAAGTGAAACTTTGAATCATTTTGGCACGTTGGAGAAAGTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACAGTTGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCATGCAGGTTGTATTTTGAATCAGCTGAAGCAGCAGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGGTTGAACCAAAGGCACAAATGGTACTTTTAGCAAACACAACTTCATCAAAGAGTGGGGTTCTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATTGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGGTTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGCAATCCAGCAGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACACGACATGATGACATGCAGAGATGGGAAATGGCTCCATATATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTGTTCAGGGCATCAACGATCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAACCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCCTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAGTTCGTTCCTTCTCCATTAATAAAACTGTCAATCACTCTCTCTCATCCCCCCCCCCCCCCCGGCTCCCCCCAAATCATTACTTCATTTTATTTATTGACACTTTCTATGCCTGGTGACAGACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGCTCTAGAAGCTGCACGGAAGGTGTTGGATCTTACTAATAATAATAGAATTGATGCTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGAAGATAACTTTCTCATTTGTGGGACCACAAATGCAGCATCAGAGGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTCTACAACAGATAGTTCGGAGTGGAAATGGAACAGATATTTGGGCCTTGTATGCTAGATGGCAAAAAATGAAAGGAGACCTCTCAATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGTCTCTAGTGCTGGGAAGTCTGTTCCACCCTTGGTTGATTGGCAGGTTTACGCTGTTAGCCTTCTAATGACAGCAACACTGGTGGCCTCCTACTGGATCTTCATTGAGTTCATATCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

794

Amino Acids

87.86

Weight (kDa)

5.15

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 867, 2296
AccBSI CCGCTC 1 cut(s) 1152
AccI GTMKAC 1 cut(s) 273
AccII CGCG 3 cut(s) 36, 294, 490
AclWI GGATC 8 cut(s) 86, 345, 811, 1225, 1355, 1625, 1947, 2366
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 1528
AcuI CTGAAG 2 cut(s) 918, 1745
AcvI CACGTG 1 cut(s) 863
AcyI GRCGYC 2 cut(s) 189, 261
AfaI GTAC 3 cut(s) 949, 984, 1192
AfiI CCNNNNNNNGG 5 cut(s) 425, 1370, 1640, 1793, 2355
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 9 cut(s) 226, 599, 739, 890, 965, 1181, 1466, 1528, 1732
AjnI CCWGG 6 cut(s) 1039, 1233, 1369, 1505, 1843, 2259
AjuI GAANNNNNNNTTGG 2 cut(s) 2158, 2190
Alw21I GWGCWC 4 cut(s) 48, 366, 1265, 2112
Alw26I GTCTC 4 cut(s) 56, 820, 2205, 2269
AlwI GGATC 8 cut(s) 86, 345, 811, 1225, 1355, 1625, 1947, 2366
AlwNI CAGNNNCTG 2 cut(s) 908, 1460
Ama87I CYCGRG 1 cut(s) 2097
AoxI GGCC 6 cut(s) 175, 342, 1042, 1521, 2178, 2346
ApoI RAATTY 1 cut(s) 1528
AseI ATTAAT 1 cut(s) 1751
AspA2I CCTAGG 1 cut(s) 1558
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 5 cut(s) 19, 416, 1043, 2064, 2178
AsuC2I CCSGG 1 cut(s) 1794
AsuHPI GGTGA 7 cut(s) 6, 119, 187, 223, 649, 1859, 2004
AvaI CYCGRG 1 cut(s) 2097
AvaII GGWCC 3 cut(s) 19, 416, 2064
AvrII CCTAGG 1 cut(s) 1558
BaeGI GKGCMC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 48
BbrPI CACGTG 1 cut(s) 863
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 4 cut(s) 48, 366, 1265, 2112
BbvCI CCTCAGC 1 cut(s) 321
BccI CCATC 8 cut(s) 173, 675, 838, 1099, 1281, 1538, 1598, 2187
BceAI ACGGC 4 cut(s) 70, 359, 1189, 1496
BciT130I CCWGG 6 cut(s) 1041, 1235, 1371, 1507, 1845, 2261
BciVI GTATCC 1 cut(s) 1548
BclI TGATCA 1 cut(s) 1470
BcnI CCSGG 1 cut(s) 1794
BcoDI GTCTC 4 cut(s) 56, 820, 2205, 2269
BfaI CTAG 6 cut(s) 651, 1559, 1601, 1916, 2190, 2268
BfmI CTRYAG 3 cut(s) 346, 1416, 1882
BfuAI ACCTGC 2 cut(s) 867, 2296
BfuI GTATCC 1 cut(s) 1548
BglI GCCNNNNNGGC 1 cut(s) 1562
BlnI CCTAGG 1 cut(s) 1558
BlpI GCTNAGC 1 cut(s) 2106
Bme1390I CCNGG 7 cut(s) 1041, 1235, 1371, 1507, 1794, 1845, 2261
Bme18I GGWCC 3 cut(s) 19, 416, 2064
BmeT110I CYCGRG 1 cut(s) 2097
BmgT120I GGNCC 5 cut(s) 19, 416, 1043, 2064, 2178
BmiI GGNNCC 5 cut(s) 632, 1299, 1436, 1798, 2065
BmrFI CCNGG 7 cut(s) 1041, 1235, 1371, 1507, 1794, 1845, 2261
BmsI GCATC 4 cut(s) 1096, 1362, 1954, 2087
BoxI GACNNNNGTC 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 214
BpmI CTGGAG 2 cut(s) 1179, 1353
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 1 cut(s) 2106
BpuMI CCSGG 1 cut(s) 1794
BsaAI YACGTR 1 cut(s) 863
BsaBI GATNNNNATC 2 cut(s) 694, 1409
BsaHI GRCGYC 2 cut(s) 189, 261
BsaI GGTCTC 2 cut(s) 2205, 2269
BsaJI CCNNGG 9 cut(s) 34, 434, 1039, 1505, 1506, 1558, 1792, 2125, 2292
BsaWI WCCGGW 2 cut(s) 16, 413
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 5 cut(s) 425, 1370, 1640, 1793, 2355
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 2 cut(s) 2346, 2360
Bse3DI GCAATG 5 cut(s) 369, 1524, 1704, 1915, 2034
Bse8I GATNNNNATC 2 cut(s) 694, 1409
BseBI CCWGG 6 cut(s) 1041, 1235, 1371, 1507, 1845, 2261
BseDI CCNNGG 9 cut(s) 34, 434, 1039, 1505, 1506, 1558, 1792, 2125, 2292
BseGI GGATG 2 cut(s) 1087, 1777
BseJI GATNNNNATC 2 cut(s) 694, 1409
BseLI CCNNNNNNNGG 5 cut(s) 425, 1370, 1640, 1793, 2355
BseMI GCAATG 5 cut(s) 369, 1524, 1704, 1915, 2034
BseMII CTCAG 7 cut(s) 312, 413, 831, 1086, 1337, 1959, 2097
BseNI ACTGG 2 cut(s) 2346, 2360
BseRI GAGGAG 4 cut(s) 44, 66, 69, 146
BseSI GKGCMC 1 cut(s) 462
BseX3I CGGCCG 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 2273
BsgI GTGCAG 3 cut(s) 46, 1908, 2245
Bsh1236I CGCG 3 cut(s) 36, 294, 490
Bsh1285I CGRYCG 2 cut(s) 178, 268
BshFI GGCC 6 cut(s) 177, 344, 1044, 1523, 2180, 2348
BsiEI CGRYCG 2 cut(s) 178, 268
BsiHKAI GWGCWC 4 cut(s) 48, 366, 1265, 2112
BsiHKCI CYCGRG 1 cut(s) 2097
BsiSI CCGG 5 cut(s) 17, 174, 214, 414, 1794
BslFI GGGAC 3 cut(s) 491, 1084, 2077
BslI CCNNNNNNNGG 5 cut(s) 425, 1370, 1640, 1793, 2355
BsmAI GTCTC 4 cut(s) 56, 820, 2205, 2269
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 3 cut(s) 491, 1084, 2077
BsmI GAATGC 1 cut(s) 1176
BsnI GGCC 6 cut(s) 177, 344, 1044, 1523, 2180, 2348
Bso31I GGTCTC 2 cut(s) 2205, 2269
BsoBI CYCGRG 1 cut(s) 2097
Bsp1286I GDGCHC 5 cut(s) 48, 366, 462, 1265, 2112
Bsp1720I GCTNAGC 1 cut(s) 2106
BspANI GGCC 6 cut(s) 177, 344, 1044, 1523, 2180, 2348
BspCNI CTCAG 7 cut(s) 313, 412, 830, 1087, 1336, 1960, 2098
BspFNI CGCG 3 cut(s) 36, 294, 490
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 5 cut(s) 632, 1299, 1436, 1798, 2065
BspMI ACCTGC 2 cut(s) 867, 2296
BspPI GGATC 8 cut(s) 86, 345, 811, 1225, 1355, 1625, 1947, 2366
BspQI GCTCTTC 1 cut(s) 1253
BspTNI GGTCTC 2 cut(s) 2205, 2269
BsrBI CCGCTC 1 cut(s) 1152
BsrDI GCAATG 5 cut(s) 369, 1524, 1704, 1915, 2034
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 2 cut(s) 2346, 2360
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 9 cut(s) 34, 434, 1039, 1505, 1506, 1558, 1792, 2125, 2292
BssNI GRCGYC 2 cut(s) 189, 261
BssT1I CCWWGG 4 cut(s) 434, 1558, 2125, 2292
Bst2UI CCWGG 6 cut(s) 1041, 1235, 1371, 1507, 1845, 2261
Bst4CI ACNGT 6 cut(s) 12, 105, 811, 1420, 1761, 1872
Bst6I CTCTTC 2 cut(s) 1253, 1682
BstACI GRCGYC 2 cut(s) 189, 261
BstBAI YACGTR 1 cut(s) 863
BstC8I GCNNGC 3 cut(s) 511, 648, 1224
BstDEI CTNAG 9 cut(s) 321, 399, 817, 1083, 1095, 1323, 1968, 2106, 2113
BstDSI CCRYGG 1 cut(s) 34
BstEII GGTNACC 1 cut(s) 655
BstF5I GGATG 2 cut(s) 1087, 1777
BstFNI CGCG 3 cut(s) 36, 294, 490
BstHHI GCGC 1 cut(s) 490
BstMAI GTCTC 4 cut(s) 56, 820, 2205, 2269
BstMCI CGRYCG 2 cut(s) 178, 268
BstMWI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1562, 1706, 1919, 2186
BstNI CCWGG 6 cut(s) 1041, 1235, 1371, 1507, 1845, 2261
BstNSI RCATGY 2 cut(s) 719, 1282
BstPAI GACNNNNGTC 1 cut(s) 812
BstPI GGTNACC 1 cut(s) 655
BstSCI CCNGG 7 cut(s) 1039, 1233, 1369, 1505, 1792, 1843, 2259
BstSFI CTRYAG 3 cut(s) 346, 1416, 1882
BstSLI GKGCMC 1 cut(s) 462
BstUI CGCG 3 cut(s) 36, 294, 490
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 1939, 2358
BstYI RGATCY 2 cut(s) 1939, 2358
BstZI CGGCCG 1 cut(s) 175
BsuI GTATCC 1 cut(s) 1548
BsuRI GGCC 6 cut(s) 177, 344, 1044, 1523, 2180, 2348
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 2 cut(s) 1087, 1777
BtsI GCAGTG 1 cut(s) 1233
BtsIMutI CAGTG 4 cut(s) 825, 1233, 1721, 2339
BveI ACCTGC 2 cut(s) 867, 2296
Cac8I GCNNGC 3 cut(s) 511, 648, 1224
CaiI CAGNNNCTG 2 cut(s) 908, 1460
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 5 cut(s) 19, 416, 1043, 2064, 2178
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 3 cut(s) 197, 215, 269
CsiI ACCWGGT 1 cut(s) 2259
Csp6I GTAC 3 cut(s) 948, 983, 1191
CspCI CAANNNNNGTGG 2 cut(s) 2325, 2360
CviQI GTAC 3 cut(s) 948, 983, 1191
DdeI CTNAG 9 cut(s) 321, 399, 817, 1083, 1095, 1323, 1968, 2106, 2113
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 1253, 1682
EarI CTCTTC 2 cut(s) 1253, 1682
EciI GGCGGA 4 cut(s) 72, 139, 190, 278
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 4 cut(s) 434, 1558, 2125, 2292
Eco147I AGGCCT 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 2 cut(s) 2205, 2269
Eco47I GGWCC 3 cut(s) 19, 416, 2064
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 918, 1745
Eco72I CACGTG 1 cut(s) 863
Eco88I CYCGRG 1 cut(s) 2097
Eco91I GGTNACC 1 cut(s) 655
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 1528
EcoRII CCWGG 6 cut(s) 1039, 1233, 1369, 1505, 1843, 2259
EcoT14I CCWWGG 4 cut(s) 434, 1558, 2125, 2292
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 4 cut(s) 434, 1558, 2125, 2292
Esp3I CGTCTC 1 cut(s) 56
FalI AAGNNNNNCTT 6 cut(s) 595, 627, 718, 750, 1993, 2025
FaqI GGGAC 3 cut(s) 491, 1084, 2077
FauNDI CATATG 3 cut(s) 308, 619, 1674
FbaI TGATCA 1 cut(s) 1470
FblI GTMKAC 1 cut(s) 273
FokI GGATG 2 cut(s) 1074, 1764
FriOI GRGCYC 1 cut(s) 48
FspBI CTAG 6 cut(s) 651, 1559, 1601, 1916, 2190, 2268
GlaI GCGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 2277
GsuI CTGGAG 2 cut(s) 1179, 1353
HaeIII GGCC 6 cut(s) 177, 344, 1044, 1523, 2180, 2348
HapII CCGG 5 cut(s) 17, 174, 214, 414, 1794
HgaI GACGC 3 cut(s) 197, 215, 269
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 2 cut(s) 189, 261
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 3 cut(s) 917, 1698, 2232
HpaII CCGG 5 cut(s) 17, 174, 214, 414, 1794
HphI GGTGA 7 cut(s) 6, 119, 187, 223, 649, 1859, 2004
Hpy166II GTNNAC 2 cut(s) 274, 2311
Hpy8I GTNNAC 2 cut(s) 274, 2311
Hpy99I CGWCG 5 cut(s) 191, 209, 263, 359, 362
HpyAV CCTTC 7 cut(s) 76, 593, 1256, 1588, 1752, 1924, 2333
HpyCH4III ACNGT 6 cut(s) 12, 105, 811, 1420, 1761, 1872
HpyCH4IV ACGT 2 cut(s) 752, 862
HpyF10VI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1562, 1706, 1919, 2186
HpyF3I CTNAG 9 cut(s) 321, 399, 817, 1083, 1095, 1323, 1968, 2106, 2113
HpySE526I ACGT 2 cut(s) 752, 862
Hsp92I GRCGYC 2 cut(s) 189, 261
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 1470
KspI CCGCGG 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 1253
LmnI GCTCC 5 cut(s) 51, 291, 630, 1303, 1802
LweI GCATC 4 cut(s) 1096, 1362, 1954, 2087
MabI ACCWGGT 1 cut(s) 2259
MaeI CTAG 6 cut(s) 651, 1559, 1601, 1916, 2190, 2268
MaeII ACGT 2 cut(s) 752, 862
MaeIII GTNAC 7 cut(s) 12, 384, 655, 763, 779, 925, 1847
MbiI CCGCTC 1 cut(s) 1152
MboII GAAGA 8 cut(s) 214, 326, 589, 684, 1270, 1699, 2054, 2353
MfeI CAATTG 2 cut(s) 481, 1314
MflI RGATCY 2 cut(s) 1939, 2358
MhlI GDGCHC 5 cut(s) 48, 366, 462, 1265, 2112
MluCI AATT 9 cut(s) 481, 552, 624, 1251, 1314, 1528, 1959, 1983, 2020
MlyI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1520
MmeI TCCRAC 3 cut(s) 264, 735, 1917
MseI TTAA 4 cut(s) 915, 1574, 1751, 2240
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 5 cut(s) 36, 60, 896, 908, 1460
MspI CCGG 5 cut(s) 17, 174, 214, 414, 1794
MspR9I CCNGG 7 cut(s) 1041, 1235, 1371, 1507, 1794, 1845, 2261
MunI CAATTG 2 cut(s) 481, 1314
Mva1269I GAATGC 1 cut(s) 1176
MvaI CCWGG 6 cut(s) 1041, 1235, 1371, 1507, 1845, 2261
MvnI CGCG 3 cut(s) 36, 294, 490
MwoI GCNNNNNNNGC 8 cut(s) 380, 389, 496, 902, 1562, 1706, 1919, 2186
NciI CCSGG 1 cut(s) 1794
NdeI CATATG 3 cut(s) 308, 619, 1674
NlaIV GGNNCC 5 cut(s) 632, 1299, 1436, 1798, 2065
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 3 cut(s) 12, 655, 1847
NspI RCATGY 2 cut(s) 719, 1282
PagI TCATGA 1 cut(s) 573
PasI CCCWGGG 1 cut(s) 1506
PceI AGGCCT 1 cut(s) 344
PciSI GCTCTTC 1 cut(s) 1253
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PctI GAATGC 1 cut(s) 1176
PfeI GAWTC 9 cut(s) 236, 493, 739, 823, 869, 890, 1058, 1319, 1387
PflFI GACNNNGTC 1 cut(s) 269
PfoI TCCNGGA 1 cut(s) 1369
PleI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1519
PmaCI CACGTG 1 cut(s) 863
PmlI CACGTG 1 cut(s) 863
PpsI GAGTC 8 cut(s) 178, 236, 278, 307, 359, 1105, 1120, 1519
Ppu21I YACGTR 1 cut(s) 863
PshAI GACNNNNGTC 1 cut(s) 812
PshBI ATTAAT 1 cut(s) 1751
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 6 cut(s) 1039, 1233, 1369, 1505, 1843, 2259
PspCI CACGTG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 655
PspFI CCCAGC 1 cut(s) 2273
PspGI CCWGG 6 cut(s) 1039, 1233, 1369, 1505, 1843, 2259
PspN4I GGNNCC 5 cut(s) 632, 1299, 1436, 1798, 2065
PspPI GGNCC 5 cut(s) 19, 416, 1043, 2064, 2178
PstNI CAGNNNCTG 2 cut(s) 908, 1460
PsuI RGATCY 2 cut(s) 1939, 2358
PsyI GACNNNGTC 1 cut(s) 269
PvuII CAGCTG 3 cut(s) 896, 908, 1460
RsaI GTAC 3 cut(s) 949, 984, 1192
RsaNI GTAC 3 cut(s) 948, 983, 1191
RseI CAYNNNNRTG 1 cut(s) 578
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 1253
SaqAI TTAA 4 cut(s) 915, 1574, 1751, 2240
Sau96I GGNCC 5 cut(s) 19, 416, 1043, 2064, 2178
SchI GAGTC 8 cut(s) 179, 236, 279, 308, 360, 1106, 1120, 1520
ScrFI CCNGG 7 cut(s) 1041, 1235, 1371, 1507, 1794, 1845, 2261
SduI GDGCHC 5 cut(s) 48, 366, 462, 1265, 2112
SexAI ACCWGGT 1 cut(s) 2259
SfaNI GCATC 4 cut(s) 1096, 1362, 1954, 2087
SfcI CTRYAG 3 cut(s) 346, 1416, 1882
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 19, 416, 2064
SmiMI CAYNNNNRTG 1 cut(s) 578
Sse9I AATT 9 cut(s) 481, 552, 624, 1251, 1314, 1528, 1959, 1983, 2020
SseBI AGGCCT 1 cut(s) 344
SspI AATATT 2 cut(s) 541, 1660
SspMI CTAG 6 cut(s) 651, 1559, 1601, 1916, 2190, 2268
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 7 cut(s) 1039, 1233, 1369, 1505, 1792, 1843, 2259
StyI CCWWGG 4 cut(s) 434, 1558, 2125, 2292
TaaI ACNGT 6 cut(s) 12, 105, 811, 1420, 1761, 1872
TaiI ACGT 2 cut(s) 755, 865
TaqI TCGA 7 cut(s) 168, 186, 681, 705, 806, 1308, 2378
TaqII GACCGA 1 cut(s) 282
TasI AATT 9 cut(s) 481, 552, 624, 1251, 1314, 1528, 1959, 1983, 2020
TauI GCSGC 2 cut(s) 39, 294
TfiI GAWTC 9 cut(s) 236, 493, 739, 823, 869, 890, 1058, 1319, 1387
Tru1I TTAA 4 cut(s) 915, 1574, 1751, 2240
Tru9I TTAA 4 cut(s) 915, 1574, 1751, 2240
TscAI CASTG 4 cut(s) 825, 1233, 1728, 2346
TseFI GTSAC 3 cut(s) 12, 655, 1847
Tsp45I GTSAC 3 cut(s) 12, 655, 1847
TspGWI ACGGA 4 cut(s) 38, 432, 935, 1942
TspRI CASTG 4 cut(s) 825, 1233, 1728, 2346
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 19, 416, 2064
VspI ATTAAT 1 cut(s) 1751
XapI RAATTY 1 cut(s) 1528
XbaI TCTAGA 1 cut(s) 1915
XceI RCATGY 2 cut(s) 719, 1282
XmaJI CCTAGG 1 cut(s) 1558
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 6 cut(s) 651, 1559, 1601, 1916, 2190, 2268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.