Rmu_sc0004660.1_g000001

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004660.1
OG0000877
Physical Location & Seq
Reverse (-)
1531 .. 7526
5996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004660.1_g000001.1.cds

Sequence Viewer

Length: 1386 bp
atgaagaatttaggtgtttacaagtacttattgcagatccctcaaacccctcagactaaaactcagaataaatcgttatttcaggttcagggtatcaaggagccctctccaggagtggcagacaggattcctttctgctatgggatttatatccctacagtttcagccttgcggaaggaatatggtgaactttgtgtccgctgtggtctgataggagaggcagtcaaaatttttgaggacttggaattatgggataatctgatattctgctatagcctattggagaaaaaagcagcagctgttgaactgatcaagacacggctttctgaaacacctaatgaccccaggttatggtgttcattaggtgacgttactaatgatgatgcctgctttgaaaaagccctagaagtttcaaacgataggtcggctcgggctatgcggtctcttgcaagcagtgcatacaacaggggggaatatagaacatcaaaacttctgtggcagtctgcaatggccttgaattctctgtatcctgatggctggtttgccctaggggctgctgcattaaaggatagggatattgagaaggcactagatggcttcactcgggctgttcagcttgatcctgaaaatggggaggcatggaataatattgcttgtttgcatatgataaaagggaagcgtaaagaagcttttattgcatttaaagaagcattgaagttcaaacgaaacagctaccaactgtgggagaactacagccatgttgctttagatgttggcaatgttgctcaggctctagaagctacatggaaggtgttggatcttactaataataagagaattgatgctgagttattggaaagaattatcacagaggtggaaagcatggcttcacctactaattcagcaatgactgatgatggtaactttcccgtcagtgggaccacaaatgcagaatctgatgtgggaaaatctcgggaagctgagcacttagtagagtttcttggaaaagttctacaacagatagtccgaagtggaaatggagcagatatttggggcatgtatgctagatggcaaaaaataaaaggagaccttgcgatgtgcagagaagcttggttaaagcaagtcagatcataccagggagctgatttgtggaaagatagagatcggtttaaaaagtttgcaaaatcctccttggaactctgcaaggtgtatatggagatttcttcgtctactggcagccgtgatgaacttctctcagctgaaaggcacctaaggaacataattaaacaggcggggagtttctcagacatggaagaacttcaacatcttaaagcctgccttgatgaagtgaagttaaatcttgattctgatagtgcatctacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

461

Amino Acids

51.95

Weight (kDa)

6.11

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1266
AccB7I CCANNNNNTGG 1 cut(s) 351
AccI GTMKAC 1 cut(s) 1229
AciI CCGC 4 cut(s) 172, 199, 439, 1292
AclWI GGATC 3 cut(s) 31, 614, 825
AcsI RAATTY 3 cut(s) 7, 228, 517
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 6 cut(s) 110, 351, 629, 742, 935, 936
AgsI TTSAA 7 cut(s) 305, 395, 414, 517, 715, 721, 1322
AjnI CCWGG 3 cut(s) 109, 344, 1134
AleI CACNNNNGTG 1 cut(s) 872
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 9 cut(s) 299, 616, 689, 732, 800, 980, 1109, 1142, 1259
AluI AGCT 9 cut(s) 299, 616, 689, 732, 800, 980, 1109, 1142, 1259
Alw21I GWGCWC 1 cut(s) 987
Alw26I GTCTC 2 cut(s) 447, 1080
AlwI GGATC 3 cut(s) 31, 614, 825
AlwNI CAGNNNCTG 2 cut(s) 299, 956
Ama87I CYCGRG 3 cut(s) 429, 603, 972
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 5 cut(s) 293, 296, 554, 557, 1236
ApoI RAATTY 3 cut(s) 7, 228, 517
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
Asp700I GAANNNNTTC 1 cut(s) 1317
AspA2I CCTAGG 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 939
AsuHPI GGTGA 3 cut(s) 197, 377, 882
AvaI CYCGRG 3 cut(s) 429, 603, 972
AvaII GGWCC 1 cut(s) 939
AvrII CCTAGG 1 cut(s) 547
AxyI CCTNAGG 1 cut(s) 1271
BanI GGYRCC 1 cut(s) 1266
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 987
BbvI GCAGC 5 cut(s) 305, 308, 541, 544, 1248
BccI CCATC 4 cut(s) 527, 587, 911, 1062
BceAI ACGGC 2 cut(s) 335, 1224
BciT130I CCWGG 3 cut(s) 111, 346, 1136
BciVI GTATCC 1 cut(s) 537
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 447, 1080
BfaI CTAG 5 cut(s) 404, 548, 590, 794, 1065
BfmI CTRYAG 3 cut(s) 156, 271, 751
BfuI GTATCC 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 551
BisI GCNGC 5 cut(s) 294, 297, 555, 558, 1237
BlnI CCTAGG 1 cut(s) 547
BlpI GCTNAGC 1 cut(s) 981
BlsI GCNGC 5 cut(s) 295, 298, 556, 559, 1238
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 3 cut(s) 111, 346, 1136
Bme18I GGWCC 1 cut(s) 939
BmeT110I CYCGRG 3 cut(s) 429, 603, 972
BmgT120I GGNCC 1 cut(s) 939
BmiI GGNNCC 3 cut(s) 102, 940, 1268
BmrFI CCNGG 3 cut(s) 111, 346, 1136
BmsI GCATC 2 cut(s) 373, 832
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 786
Bpu1102I GCTNAGC 1 cut(s) 981
BsaBI GATNNNNATC 2 cut(s) 149, 1161
BsaI GGTCTC 2 cut(s) 447, 1080
BsaJI CCNNGG 4 cut(s) 344, 547, 1135, 1191
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bsc4I CCNNNNNNNGG 6 cut(s) 110, 351, 629, 742, 935, 936
Bse1I ACTGG 1 cut(s) 1237
Bse21I CCTNAGG 1 cut(s) 1271
Bse3DI GCAATG 3 cut(s) 513, 784, 912
Bse8I GATNNNNATC 2 cut(s) 149, 1161
BseBI CCWGG 3 cut(s) 111, 346, 1136
BseDI CCNNGG 4 cut(s) 344, 547, 1135, 1191
BseJI GATNNNNATC 2 cut(s) 149, 1161
BseLI CCNNNNNNNGG 6 cut(s) 110, 351, 629, 742, 935, 936
BseMI GCAATG 3 cut(s) 513, 784, 912
BseMII CTCAG 7 cut(s) 65, 77, 800, 837, 972, 1269, 1317
BseNI ACTGG 1 cut(s) 1237
BseXI GCAGC 5 cut(s) 305, 308, 541, 544, 1248
BsgI GTGCAG 1 cut(s) 1120
BshFI GGCC 1 cut(s) 512
BshNI GGYRCC 1 cut(s) 1266
BsiHKAI GWGCWC 1 cut(s) 987
BsiHKCI CYCGRG 3 cut(s) 429, 603, 972
BslFI GGGAC 1 cut(s) 952
BslI CCNNNNNNNGG 6 cut(s) 110, 351, 629, 742, 935, 936
BsmAI GTCTC 2 cut(s) 447, 1080
BsmFI GGGAC 1 cut(s) 952
BsnI GGCC 1 cut(s) 512
Bso31I GGTCTC 2 cut(s) 447, 1080
BsoBI CYCGRG 3 cut(s) 429, 603, 972
Bsp1286I GDGCHC 2 cut(s) 105, 987
Bsp143I GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
Bsp1720I GCTNAGC 1 cut(s) 981
BspACI CCGC 4 cut(s) 172, 199, 439, 1292
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 7 cut(s) 64, 76, 799, 838, 973, 1268, 1316
BspLI GGNNCC 3 cut(s) 102, 940, 1268
BspPI GGATC 3 cut(s) 31, 614, 825
BspT107I GGYRCC 1 cut(s) 1266
BspTNI GGTCTC 2 cut(s) 447, 1080
BsrDI GCAATG 3 cut(s) 513, 784, 912
BsrI ACTGG 1 cut(s) 1237
BssECI CCNNGG 4 cut(s) 344, 547, 1135, 1191
BssMI GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
BssT1I CCWWGG 2 cut(s) 547, 1191
Bst2UI CCWGG 3 cut(s) 111, 346, 1136
Bst4CI ACNGT 2 cut(s) 160, 741
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 388, 451, 1336
BstDEI CTNAG 9 cut(s) 51, 63, 786, 846, 981, 988, 1255, 1271, 1303
BstKTI GATC 6 cut(s) 39, 312, 622, 820, 1130, 1165
BstMAI GTCTC 2 cut(s) 447, 1080
BstMBI GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
BstMWI GCNNNNNNNGC 4 cut(s) 455, 551, 695, 797
BstNI CCWGG 3 cut(s) 111, 346, 1136
BstNSI RCATGY 1 cut(s) 1060
BstSCI CCNGG 3 cut(s) 109, 344, 1134
BstSFI CTRYAG 3 cut(s) 156, 271, 751
BstV1I GCAGC 5 cut(s) 305, 308, 541, 544, 1248
BstX2I RGATCY 2 cut(s) 36, 817
BstYI RGATCY 2 cut(s) 36, 817
Bsu36I CCTNAGG 1 cut(s) 1271
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 512
BtgZI GCGATG 1 cut(s) 1109
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 2 cut(s) 460, 940
Cac8I GCNNGC 3 cut(s) 388, 451, 1336
CaiI CAGNNNCTG 2 cut(s) 299, 956
Cfr13I GGNCC 1 cut(s) 939
Csp6I GTAC 1 cut(s) 25
CviAII CATG 6 cut(s) 639, 758, 804, 883, 1057, 1309
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 9 cut(s) 51, 63, 786, 846, 981, 988, 1255, 1271, 1303
DpnI GATC 6 cut(s) 38, 311, 621, 819, 1129, 1164
DpnII GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
DraI TTTAAA 2 cut(s) 703, 1171
Eco130I CCWWGG 2 cut(s) 547, 1191
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 447, 1080
Eco47I GGWCC 1 cut(s) 939
Eco81I CCTNAGG 1 cut(s) 1271
Eco88I CYCGRG 3 cut(s) 429, 603, 972
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 3 cut(s) 109, 344, 1134
EcoT14I CCWWGG 2 cut(s) 547, 1191
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 547, 1191
FaeI CATG 6 cut(s) 642, 761, 807, 886, 1060, 1312
FalI AAGNNNNNCTT 6 cut(s) 871, 903, 1074, 1106, 1323, 1355
FaqI GGGAC 1 cut(s) 952
FatI CATG 6 cut(s) 638, 757, 803, 882, 1056, 1308
FauI CCCGC 1 cut(s) 1285
FauNDI CATATG 1 cut(s) 663
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 1 cut(s) 1229
Fnu4HI GCNGC 5 cut(s) 294, 297, 555, 558, 1237
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 5 cut(s) 294, 297, 555, 558, 1237
FspBI CTAG 5 cut(s) 404, 548, 590, 794, 1065
GluI GCNGC 5 cut(s) 294, 297, 555, 558, 1237
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 512
Hin1II CATG 6 cut(s) 642, 761, 807, 886, 1060, 1312
HindIII AAGCTT 2 cut(s) 687, 1107
HinfI GANTC 3 cut(s) 127, 953, 1364
HphI GGTGA 3 cut(s) 197, 377, 882
Hpy166II GTNNAC 3 cut(s) 19, 188, 1230
Hpy188III TCNNGA 6 cut(s) 313, 530, 623, 794, 974, 1361
Hpy8I GTNNAC 3 cut(s) 19, 188, 1230
HpyAV CCTTC 3 cut(s) 169, 577, 802
HpyCH4III ACNGT 2 cut(s) 160, 741
HpyCH4IV ACGT 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 551, 695, 797
HpyF3I CTNAG 9 cut(s) 51, 63, 786, 846, 981, 988, 1255, 1271, 1303
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 6 cut(s) 642, 761, 807, 886, 1060, 1312
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
LmnI GCTCC 3 cut(s) 100, 1040, 1139
Lsp1109I GCAGC 5 cut(s) 305, 308, 541, 544, 1248
LweI GCATC 2 cut(s) 373, 832
MaeI CTAG 5 cut(s) 404, 548, 590, 794, 1065
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 3 cut(s) 365, 370, 920
MalI GATC 6 cut(s) 38, 311, 621, 819, 1129, 1164
MboI GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
MboII GAAGA 3 cut(s) 16, 1215, 1325
MflI RGATCY 2 cut(s) 36, 817
MhlI GDGCHC 2 cut(s) 105, 987
MluCI AATT 8 cut(s) 7, 228, 245, 517, 837, 861, 898, 1281
MmeI TCCRAC 1 cut(s) 795
MnlI CCTC 8 cut(s) 51, 60, 115, 211, 229, 628, 865, 1198
MroXI GAANNNNTTC 1 cut(s) 1317
MseI TTAA 8 cut(s) 563, 702, 1115, 1170, 1284, 1329, 1355, 1384
MslI CAYNNNNRTG 1 cut(s) 872
MspA1I CMGCKG 3 cut(s) 201, 299, 1259
MspR9I CCNGG 3 cut(s) 111, 346, 1136
MvaI CCWGG 3 cut(s) 111, 346, 1136
MwoI GCNNNNNNNGC 4 cut(s) 455, 551, 695, 797
NdeI CATATG 1 cut(s) 663
NdeII GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
NlaIII CATG 6 cut(s) 642, 761, 807, 886, 1060, 1312
NlaIV GGNNCC 3 cut(s) 102, 940, 1268
NmuCI GTSAC 1 cut(s) 365
NspI RCATGY 1 cut(s) 1060
OliI CACNNNNGTG 1 cut(s) 872
PdmI GAANNNNTTC 1 cut(s) 1317
PfeI GAWTC 3 cut(s) 127, 953, 1364
PflMI CCANNNNNTGG 1 cut(s) 351
PfoI TCCNGGA 1 cut(s) 109
PkrI GCNGC 5 cut(s) 295, 298, 556, 559, 1238
Psp6I CCWGG 3 cut(s) 109, 344, 1134
PspGI CCWGG 3 cut(s) 109, 344, 1134
PspN4I GGNNCC 3 cut(s) 102, 940, 1268
PspPI GGNCC 1 cut(s) 939
PstNI CAGNNNCTG 2 cut(s) 299, 956
PsuI RGATCY 2 cut(s) 36, 817
PvuII CAGCTG 2 cut(s) 299, 1259
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 872
SaqAI TTAA 8 cut(s) 563, 702, 1115, 1170, 1284, 1329, 1355, 1384
SatI GCNGC 5 cut(s) 294, 297, 555, 558, 1237
Sau3AI GATC 6 cut(s) 36, 309, 619, 817, 1127, 1162
Sau96I GGNCC 1 cut(s) 939
ScaI AGTACT 1 cut(s) 26
ScrFI CCNGG 3 cut(s) 111, 346, 1136
SduI GDGCHC 2 cut(s) 105, 987
SfaNI GCATC 2 cut(s) 373, 832
SfcI CTRYAG 3 cut(s) 156, 271, 751
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 872
Sse9I AATT 8 cut(s) 7, 228, 245, 517, 837, 861, 898, 1281
SsiI CCGC 4 cut(s) 172, 199, 439, 1292
SspI AATATT 1 cut(s) 649
SspMI CTAG 5 cut(s) 404, 548, 590, 794, 1065
StyD4I CCNGG 3 cut(s) 109, 344, 1134
StyI CCWWGG 2 cut(s) 547, 1191
TaaI ACNGT 2 cut(s) 160, 741
TaiI ACGT 1 cut(s) 372
TasI AATT 8 cut(s) 7, 228, 245, 517, 837, 861, 898, 1281
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 3 cut(s) 127, 953, 1364
Tru1I TTAA 8 cut(s) 563, 702, 1115, 1170, 1284, 1329, 1355, 1384
Tru9I TTAA 8 cut(s) 563, 702, 1115, 1170, 1284, 1329, 1355, 1384
TscAI CASTG 2 cut(s) 460, 940
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 5 cut(s) 293, 296, 554, 557, 1236
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 4 cut(s) 17, 348, 1260, 1359
TspRI CASTG 2 cut(s) 460, 940
Van91I CCANNNNNTGG 1 cut(s) 351
VpaK11BI GGWCC 1 cut(s) 939
XapI RAATTY 3 cut(s) 7, 228, 517
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 1 cut(s) 1060
XmaJI CCTAGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 1229
XmnI GAANNNNTTC 1 cut(s) 1317
XspI CTAG 5 cut(s) 404, 548, 590, 794, 1065
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.