Rh1AG042000

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000877
Physical Location & Seq
Reverse (-)
7289667 .. 7291576
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG042000.1

Sequence Viewer

Length: 306 bp
ATGACAGCTATTCTGGAGGTTATATCAGATGGCATTCAAGTTGGTGGTACTGCTACTGACCCTCTGAGTGGAATCCATCAGGCAGTGATCCTGGCTAAATGCCCTCTCATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCACACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACAACGATGCTGTGATGTCCCACGTATTCGATGGGAGTCAACACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATTGGTGTTCATTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

101

Amino Acids

11.43

Weight (kDa)

5.73

Isoelectric Point (pI)

56.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 124
AclWI GGATC 1 cut(s) 82
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 2 cut(s) 8, 184
AluI AGCT 2 cut(s) 8, 184
Alw21I GWGCWC 1 cut(s) 122
AlwI GGATC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 122
BccI CCATC 5 cut(s) 23, 84, 138, 228, 274
BciT130I CCWGG 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 35
BsaAI YACGTR 2 cut(s) 227, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 92
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 56, 194
Bsh1236I CGCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 57, 193
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 156
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 110
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 1 cut(s) 110
BstBAI YACGTR 2 cut(s) 227, 248
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 65, 180
BstFNI CGCG 1 cut(s) 124
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 48
CviAII CATG 2 cut(s) 128, 136
CviJI RGCY 4 cut(s) 8, 95, 155, 184
CviKI_1 RGCY 4 cut(s) 8, 95, 155, 184
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 2 cut(s) 65, 180
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 131, 139
FaiI YATR 5 cut(s) 23, 129, 137, 193, 203
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 127, 135
GsuI CTGGAG 1 cut(s) 35
Hin1II CATG 2 cut(s) 131, 139
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 3 cut(s) 72, 176, 239
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 2 cut(s) 28, 66
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 243
HpyCH4IV ACGT 3 cut(s) 226, 247, 265
HpyCH4V TGCA 2 cut(s) 139, 269
HpyF3I CTNAG 2 cut(s) 65, 180
HpySE526I ACGT 3 cut(s) 226, 247, 265
Hsp92II CATG 2 cut(s) 131, 139
Kzo9I GATC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 65, 77, 104
LweI GCATC 1 cut(s) 200
MaeII ACGT 3 cut(s) 226, 247, 265
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 127
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 1 cut(s) 171
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 4 cut(s) 10, 72, 114, 160
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 171
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 124
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 131, 139
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 251
NspI RCATGY 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 110
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 72, 176
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
Ppu21I YACGTR 2 cut(s) 227, 248
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 156
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 122
SetI ASST 6 cut(s) 10, 21, 186, 229, 250, 268
SfaNI GCATC 1 cut(s) 200
Sse9I AATT 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 3 cut(s) 229, 250, 268
TaqI TCGA 2 cut(s) 165, 232
TasI AATT 1 cut(s) 171
TfiI GAWTC 2 cut(s) 72, 176
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 286
TspRI CASTG 1 cut(s) 90
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.