Rh1CG045000

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000877
Physical Location & Seq
Reverse (-)
8593631 .. 8606645
13015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG045000.1

Sequence Viewer

Length: 1659 bp
ATGCAGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTTCAGGGCATCAACGATCCCTCTCCAGGAGTGGCAGACAGGATTCATTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCAGAAGGAATACGGTGAACTTTGTGTCTGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTGACAAAGCCCTAGAAGTTTCTAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAAGGATATTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCCTGTTTACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTGCACGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGTATGGCTTCACCTACTAATTCAGCAATGACTGATGATGAAGATAACTTTCTCGTTTGTGGGACCACAAATGCAGCATCTGAGGTGGGACAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTCTACAACAGATAGTTCGGAGTGGAAATGGAACAGATATTTGGGGCTTGTATGCTAGATGGCAAAAAATGAAAGGAGACCTCTCAATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGATCTGATTTGTGGAAAGATAGAGATCGGTTTAAAAAGTTTGCGAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCATCTATTGGCAGCCGTGATGAACTTCTCTCAGCTGAAAGGCACCTAAGGAACATAATGAAACAGGCGGGGAGTTTCGCAGACATGGAAGAACTTCAACATCTTAAAGCCTGCCTTGATGAAGTGAAGTTAAAACTTGATTGTGATACTTTTCATGATCACATGTCAAACTATAAAAATCTTAAGTGGGACTGGAAGTCTGTTCCACCCTTGGTTGATTGGCAGGTGGTTTCTCCGTGTTTGCTGGTGTTGGAGAACGCACTCGTGAGGGCTAACTCTGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCCGTCGGATACCAACCTACTTTAGCTACTGATCTTGGAGGTCTTCAAGAGCGTATCACAACCACCAAGAAGGGTTCCATTACTTCTGTCCAAGCTATTTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCAACTACTTTTGCTCACTTGGATACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

552

Amino Acids

61.69

Weight (kDa)

5.11

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_ab PF00006 482 - 551 1.5e-17 ATP synthase alpha/beta family, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1393
Acc36I ACCTGC 1 cut(s) 1393
AccB1I GGYRCC 1 cut(s) 1221
AccB7I CCANNNNNTGG 1 cut(s) 366
AciI CCGC 2 cut(s) 454, 1247
AclWI GGATC 5 cut(s) 110, 629, 777, 1102, 1610
AcsI RAATTY 2 cut(s) 243, 532
AdeI CACNNNGTG 1 cut(s) 470
AfiI CCNNNNNNNGG 3 cut(s) 125, 366, 644
AflII CTTAAG 1 cut(s) 1361
AflIII ACRYGT 1 cut(s) 1341
AgsI TTSAA 5 cut(s) 26, 320, 532, 1277, 1538
AhdI GACNNNNNGTC 1 cut(s) 1375
AjnI CCWGG 3 cut(s) 124, 359, 1089
AjuI GAANNNNNNNTTGG 4 cut(s) 988, 1020, 1130, 1162
Alw21I GWGCWC 2 cut(s) 40, 942
Alw26I GTCTC 2 cut(s) 462, 1035
Alw44I GTGCAC 1 cut(s) 36
AlwI GGATC 5 cut(s) 110, 629, 777, 1102, 1610
AlwNI CAGNNNCTG 3 cut(s) 314, 911, 1619
Ama87I CYCGRG 2 cut(s) 444, 927
AoxI GGCC 1 cut(s) 525
ApaLI GTGCAC 1 cut(s) 36
ApeKI GCWGC 7 cut(s) 308, 311, 569, 572, 752, 905, 1191
ApoI RAATTY 2 cut(s) 243, 532
Asp700I GAANNNNTTC 1 cut(s) 1272
AspA2I CCTAGG 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 894
AsuHPI GGTGA 3 cut(s) 212, 392, 834
AvaI CYCGRG 2 cut(s) 444, 927
AvaII GGWCC 1 cut(s) 894
AvrII CCTAGG 1 cut(s) 562
AxyI CCTNAGG 1 cut(s) 1226
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 1221
BauI CACGAG 1 cut(s) 1442
BbsI GAAGAC 1 cut(s) 1526
Bbv12I GWGCWC 2 cut(s) 40, 942
BbvI GCAGC 7 cut(s) 320, 323, 556, 559, 739, 917, 1203
BccI CCATC 5 cut(s) 83, 542, 602, 1017, 1495
BceAI ACGGC 4 cut(s) 18, 350, 1179, 1478
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 3 cut(s) 126, 361, 1091
BciVI GTATCC 4 cut(s) 552, 1493, 1493, 1642
BclI TGATCA 2 cut(s) 324, 1336
BcoDI GTCTC 2 cut(s) 462, 1035
BfaI CTAG 5 cut(s) 419, 563, 605, 746, 1020
BfmI CTRYAG 3 cut(s) 171, 286, 703
BfrI CTTAAG 1 cut(s) 1361
BfuAI ACCTGC 1 cut(s) 1393
BfuI GTATCC 4 cut(s) 552, 1493, 1493, 1642
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 7 cut(s) 309, 312, 570, 573, 753, 906, 1192
BlnI CCTAGG 1 cut(s) 562
BlpI GCTNAGC 2 cut(s) 450, 936
BlsI GCNGC 7 cut(s) 310, 313, 571, 574, 754, 907, 1193
Bme1390I CCNGG 3 cut(s) 126, 361, 1091
Bme18I GGWCC 1 cut(s) 894
BmeRI GACNNNNNGTC 1 cut(s) 1375
BmeT110I CYCGRG 2 cut(s) 444, 927
BmgT120I GGNCC 1 cut(s) 894
BmiI GGNNCC 3 cut(s) 895, 1223, 1567
BmrFI CCNGG 3 cut(s) 126, 361, 1091
BmsI GCATC 4 cut(s) 117, 388, 784, 917
BpiI GAAGAC 1 cut(s) 1526
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 2 cut(s) 450, 936
BsaBI GATNNNNATC 2 cut(s) 164, 1116
BsaI GGTCTC 2 cut(s) 462, 1035
BsaJI CCNNGG 6 cut(s) 359, 562, 955, 1090, 1146, 1389
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 366, 644
Bse1I ACTGG 1 cut(s) 1376
Bse21I CCTNAGG 1 cut(s) 1226
Bse3DI GCAATG 3 cut(s) 528, 736, 864
Bse8I GATNNNNATC 2 cut(s) 164, 1116
BseBI CCWGG 3 cut(s) 126, 361, 1091
BseDI CCNNGG 6 cut(s) 359, 562, 955, 1090, 1146, 1389
BseJI GATNNNNATC 2 cut(s) 164, 1116
BseLI CCNNNNNNNGG 3 cut(s) 125, 366, 644
BseMI GCAATG 3 cut(s) 528, 736, 864
BseMII CTCAG 6 cut(s) 752, 789, 903, 927, 1224, 1449
BseNI ACTGG 1 cut(s) 1376
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 7 cut(s) 320, 323, 556, 559, 739, 917, 1203
BsgI GTGCAG 2 cut(s) 738, 1075
BshFI GGCC 1 cut(s) 527
BshNI GGYRCC 1 cut(s) 1221
BsiHKAI GWGCWC 2 cut(s) 40, 942
BsiHKCI CYCGRG 2 cut(s) 444, 927
BslFI GGGAC 3 cut(s) 907, 933, 1382
BslI CCNNNNNNNGG 3 cut(s) 125, 366, 644
BsmAI GTCTC 2 cut(s) 462, 1035
BsmFI GGGAC 3 cut(s) 907, 933, 1382
BsnI GGCC 1 cut(s) 527
Bso31I GGTCTC 2 cut(s) 462, 1035
BsoBI CYCGRG 2 cut(s) 444, 927
Bsp1286I GDGCHC 2 cut(s) 40, 942
Bsp1720I GCTNAGC 2 cut(s) 450, 936
BspACI CCGC 2 cut(s) 454, 1247
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 6 cut(s) 751, 790, 904, 928, 1223, 1450
BspHI TCATGA 1 cut(s) 1333
BspLI GGNNCC 3 cut(s) 895, 1223, 1567
BspMI ACCTGC 1 cut(s) 1393
BspPI GGATC 5 cut(s) 110, 629, 777, 1102, 1610
BspT107I GGYRCC 1 cut(s) 1221
BspTI CTTAAG 1 cut(s) 1361
BspTNI GGTCTC 2 cut(s) 462, 1035
BsrDI GCAATG 3 cut(s) 528, 736, 864
BsrI ACTGG 1 cut(s) 1376
BssECI CCNNGG 6 cut(s) 359, 562, 955, 1090, 1146, 1389
BssSI CACGAG 1 cut(s) 1442
BssT1I CCWWGG 4 cut(s) 562, 955, 1146, 1389
Bst2BI CACGAG 1 cut(s) 1442
Bst2UI CCWGG 3 cut(s) 126, 361, 1091
Bst4CI ACNGT 3 cut(s) 175, 200, 693
BstAFI CTTAAG 1 cut(s) 1361
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 4 cut(s) 403, 466, 1291, 1599
BstDEI CTNAG 9 cut(s) 450, 738, 798, 912, 936, 943, 1210, 1226, 1458
BstMAI GTCTC 2 cut(s) 462, 1035
BstMWI GCNNNNNNNGC 3 cut(s) 470, 566, 749
BstNI CCWGG 3 cut(s) 126, 361, 1091
BstNSI RCATGY 1 cut(s) 1345
BstSCI CCNGG 3 cut(s) 124, 359, 1089
BstSFI CTRYAG 3 cut(s) 171, 286, 703
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 7 cut(s) 320, 323, 556, 559, 739, 917, 1203
BstV2I GAAGAC 1 cut(s) 1526
BstX2I RGATCY 3 cut(s) 769, 1094, 1615
BstYI RGATCY 3 cut(s) 769, 1094, 1615
Bsu36I CCTNAGG 1 cut(s) 1226
BsuI GTATCC 4 cut(s) 552, 1493, 1493, 1642
BsuRI GGCC 1 cut(s) 527
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 475
BveI ACCTGC 1 cut(s) 1393
Cac8I GCNNGC 4 cut(s) 403, 466, 1291, 1599
CaiI CAGNNNCTG 3 cut(s) 314, 911, 1619
CciI TCATGA 1 cut(s) 1333
Cfr13I GGNCC 1 cut(s) 894
CviAII CATG 7 cut(s) 41, 68, 654, 710, 1264, 1334, 1342
DdeI CTNAG 9 cut(s) 450, 738, 798, 912, 936, 943, 1210, 1226, 1458
DraI TTTAAA 1 cut(s) 1126
DraIII CACNNNGTG 1 cut(s) 470
DriI GACNNNNNGTC 1 cut(s) 1375
Eam1105I GACNNNNNGTC 1 cut(s) 1375
Eco130I CCWWGG 4 cut(s) 562, 955, 1146, 1389
Eco31I GGTCTC 2 cut(s) 462, 1035
Eco47I GGWCC 1 cut(s) 894
Eco81I CCTNAGG 1 cut(s) 1226
Eco88I CYCGRG 2 cut(s) 444, 927
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 3 cut(s) 124, 359, 1089
EcoT14I CCWWGG 4 cut(s) 562, 955, 1146, 1389
ErhI CCWWGG 4 cut(s) 562, 955, 1146, 1389
FaeI CATG 7 cut(s) 44, 71, 657, 713, 1267, 1337, 1345
FalI AAGNNNNNCTT 4 cut(s) 823, 855, 1278, 1310
FaqI GGGAC 3 cut(s) 907, 933, 1382
FatI CATG 7 cut(s) 40, 67, 653, 709, 1263, 1333, 1341
FauI CCCGC 1 cut(s) 1240
FbaI TGATCA 2 cut(s) 324, 1336
Fnu4HI GCNGC 7 cut(s) 309, 312, 570, 573, 753, 906, 1192
Fsp4HI GCNGC 7 cut(s) 309, 312, 570, 573, 753, 906, 1192
FspBI CTAG 5 cut(s) 419, 563, 605, 746, 1020
GluI GCNGC 7 cut(s) 309, 312, 570, 573, 753, 906, 1192
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 527
Hin1II CATG 7 cut(s) 44, 71, 657, 713, 1267, 1337, 1345
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 2 cut(s) 142, 515
HphI GGTGA 3 cut(s) 212, 392, 834
Hpy166II GTNNAC 4 cut(s) 38, 83, 203, 674
Hpy188I TCNGA 9 cut(s) 16, 225, 343, 913, 984, 1082, 1099, 1459, 1499
Hpy188III TCNNGA 8 cut(s) 328, 545, 638, 746, 929, 1334, 1444, 1538
Hpy8I GTNNAC 4 cut(s) 38, 83, 203, 674
Hpy99I CGWCG 1 cut(s) 1499
HpyAV CCTTC 4 cut(s) 184, 592, 754, 1555
HpyCH4III ACNGT 3 cut(s) 175, 200, 693
HpyCH4IV ACGT 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 566, 749
HpyF3I CTNAG 9 cut(s) 450, 738, 798, 912, 936, 943, 1210, 1226, 1458
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 7 cut(s) 44, 71, 657, 713, 1267, 1337, 1345
Ksp22I TGATCA 2 cut(s) 324, 1336
LmnI GCTCC 1 cut(s) 1627
Lsp1109I GCAGC 7 cut(s) 320, 323, 556, 559, 739, 917, 1203
LweI GCATC 4 cut(s) 117, 388, 784, 917
MaeI CTAG 5 cut(s) 419, 563, 605, 746, 1020
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 2 cut(s) 380, 385
MboII GAAGA 4 cut(s) 884, 1170, 1280, 1526
MflI RGATCY 3 cut(s) 769, 1094, 1615
MhlI GDGCHC 2 cut(s) 40, 942
MluCI AATT 7 cut(s) 18, 243, 260, 532, 789, 813, 850
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 3 cut(s) 747, 1410, 1477
MroXI GAANNNNTTC 1 cut(s) 1272
MseI TTAA 6 cut(s) 578, 1070, 1125, 1284, 1310, 1362
MspA1I CMGCKG 2 cut(s) 314, 1214
MspCI CTTAAG 1 cut(s) 1361
MspR9I CCNGG 3 cut(s) 126, 361, 1091
MvaI CCWGG 3 cut(s) 126, 361, 1091
MwoI GCNNNNNNNGC 3 cut(s) 470, 566, 749
NlaIII CATG 7 cut(s) 44, 71, 657, 713, 1267, 1337, 1345
NlaIV GGNNCC 3 cut(s) 895, 1223, 1567
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 1345
PagI TCATGA 1 cut(s) 1333
PaqCI CACCTGC 1 cut(s) 1393
PciI ACATGT 1 cut(s) 1341
PdmI GAANNNNTTC 1 cut(s) 1272
PfeI GAWTC 1 cut(s) 142
PflMI CCANNNNNTGG 1 cut(s) 366
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 7 cut(s) 310, 313, 571, 574, 754, 907, 1193
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PscI ACATGT 1 cut(s) 1341
Psp6I CCWGG 3 cut(s) 124, 359, 1089
PspGI CCWGG 3 cut(s) 124, 359, 1089
PspN4I GGNNCC 3 cut(s) 895, 1223, 1567
PspPI GGNCC 1 cut(s) 894
PstNI CAGNNNCTG 3 cut(s) 314, 911, 1619
PsuI RGATCY 3 cut(s) 769, 1094, 1615
PvuII CAGCTG 2 cut(s) 314, 1214
SaqAI TTAA 6 cut(s) 578, 1070, 1125, 1284, 1310, 1362
SatI GCNGC 7 cut(s) 309, 312, 570, 573, 753, 906, 1192
Sau96I GGNCC 1 cut(s) 894
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 3 cut(s) 126, 361, 1091
SduI GDGCHC 2 cut(s) 40, 942
SfaNI GCATC 4 cut(s) 117, 388, 784, 917
SfcI CTRYAG 3 cut(s) 171, 286, 703
SinI GGWCC 1 cut(s) 894
SmlI CTYRAG 1 cut(s) 1361
SmoI CTYRAG 1 cut(s) 1361
Sse9I AATT 7 cut(s) 18, 243, 260, 532, 789, 813, 850
SsiI CCGC 2 cut(s) 454, 1247
SspI AATATT 2 cut(s) 279, 664
SspMI CTAG 5 cut(s) 419, 563, 605, 746, 1020
StyD4I CCNGG 3 cut(s) 124, 359, 1089
StyI CCWWGG 4 cut(s) 562, 955, 1146, 1389
TaaI ACNGT 3 cut(s) 175, 200, 693
TaiI ACGT 1 cut(s) 387
TasI AATT 7 cut(s) 18, 243, 260, 532, 789, 813, 850
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 6 cut(s) 578, 1070, 1125, 1284, 1310, 1362
Tru9I TTAA 6 cut(s) 578, 1070, 1125, 1284, 1310, 1362
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 7 cut(s) 308, 311, 569, 572, 752, 905, 1191
Tsp45I GTSAC 1 cut(s) 380
TspGWI ACGGA 2 cut(s) 772, 1404
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 366
Vha464I CTTAAG 1 cut(s) 1361
VneI GTGCAC 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 894
XapI RAATTY 2 cut(s) 243, 532
XbaI TCTAGA 1 cut(s) 745
XceI RCATGY 1 cut(s) 1345
XmaJI CCTAGG 1 cut(s) 562
XmnI GAANNNNTTC 1 cut(s) 1272
XspI CTAG 5 cut(s) 419, 563, 605, 746, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.