Rh1DG022800

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Forward (+)
3506366 .. 3518656
12291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG022800.1

Sequence Viewer

Length: 2136 bp
ATGTCTGAACCGTCGCCGGACCTCGCTATCCTCCGCCGCTACGAGCTCCCCCTCACCTCCGCCGACGCAAACCGGATCGTCTTCAAGCTCACCGATTCCGACTCCCTAGGCGACCACGACGGCGACCGAGTCTACTCCGAGTTGCTCCGCCGCGTGGAGTCGTTCATATGCGAAGAAGCTGAGGATAATGGGAAGGACCAGGCCTATAGAGTCGTCGTCGTACTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACTGGACCTTTGGAGGGGCTGCCAAGGTGTCCGTTGCCAGTGGAAGTGCCCTTATGTGATGAGTGGGACAGTTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTCACTAGGGTCACCCTTCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTTTGTTTGACCTTTTGCATGTCTTCACAATGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACGTGTTGATTCCTGCAGGTTGCATTTTGAAGCAGCGGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGGTCGAACCAAAGGCACAAATGGTACTTTTAGCAAATGCAACTTCGTCAGAGAGTGGGGCTCTCTGCTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATCGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCACGAGGCTTCTGATATATTATTGACTCCAAGATTGGTAGAGAATGAGAGCGATTCTGGAGTTATATCAGACGGCATTCAAGTTGGTGGTACTGCTGCTGACCCTTTGAGTGGAATCCATCAGGCAGTGATCCCGGCTAAATGCCTTCTAATTGAGAAGAGCACGCGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATCATCATATTTTATTATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGACACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATCGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACAGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTGAAAAAGCCCTAGAAGTTTCAAACGATAGGTCGGCTCGGGCTAAGCAGTCTCTTGCATGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTCACTCAGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTTATTGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTACCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTTCCCAGGCTCTAGAAGCTACATGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATCACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGTAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGGTAGAGTTTCTTGGAAAAGTTCTACAACAGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

711

Amino Acids

79.14

Weight (kDa)

5.16

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 633
AccB7I CCANNNNNTGG 1 cut(s) 1458
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 2 cut(s) 132, 1142
AccII CGCG 3 cut(s) 153, 349, 1024
AclWI GGATC 4 cut(s) 83, 982, 1721, 1932
AcsI RAATTY 2 cut(s) 1335, 1624
AcuI CTGAAG 1 cut(s) 1841
AcvI CACGTG 1 cut(s) 629
AfaI GTAC 4 cut(s) 222, 706, 741, 949
AfiI CCNNNNNNNGG 9 cut(s) 154, 284, 968, 1217, 1458, 1736, 1849, 2042, 2043
AflIII ACRYGT 2 cut(s) 628, 1145
AgsI TTSAA 9 cut(s) 85, 458, 656, 938, 1412, 1502, 1521, 1624, 1828
AhdI GACNNNNNGTC 1 cut(s) 1149
AjnI CCWGG 5 cut(s) 198, 796, 1216, 1451, 1893
AleI CACNNNNGTG 1 cut(s) 1979
AloI GAACNNNNNNTCC 2 cut(s) 1287, 1319
Alw21I GWGCWC 3 cut(s) 48, 1022, 2094
Alw26I GTCTC 1 cut(s) 1554
AlwI GGATC 4 cut(s) 83, 982, 1721, 1932
AlwNI CAGNNNCTG 3 cut(s) 665, 1406, 2063
Ama87I CYCGRG 2 cut(s) 1536, 2079
AoxI GGCC 3 cut(s) 201, 799, 1617
ApeKI GCWGC 9 cut(s) 239, 289, 365, 659, 953, 1400, 1403, 1661, 1664
ApoI RAATTY 2 cut(s) 1335, 1624
ArsI GACNNNNNNTTYG 2 cut(s) 1514, 1546
AspA2I CCTAGG 2 cut(s) 106, 1654
AspLEI GCGC 2 cut(s) 349, 534
AspS9I GGNCC 5 cut(s) 19, 196, 275, 800, 2046
AsuC2I CCSGG 1 cut(s) 992
AsuHPI GGTGA 6 cut(s) 46, 82, 508, 1304, 1484, 1989
AvaI CYCGRG 2 cut(s) 1536, 2079
AvaII GGWCC 4 cut(s) 19, 196, 275, 2046
AvrII CCTAGG 2 cut(s) 106, 1654
BaeGI GKGCMC 1 cut(s) 321
BanII GRGCYC 3 cut(s) 48, 778, 1212
BauI CACGAG 1 cut(s) 860
BbrPI CACGTG 1 cut(s) 629
BbsI GAAGAC 3 cut(s) 73, 543, 571
Bbv12I GWGCWC 3 cut(s) 48, 1022, 2094
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 9 cut(s) 226, 276, 352, 671, 940, 1412, 1415, 1648, 1651
BccI CCATC 9 cut(s) 534, 604, 856, 984, 1038, 1174, 1634, 1694, 2018
BceAI ACGGC 3 cut(s) 136, 218, 946
BciT130I CCWGG 5 cut(s) 200, 798, 1218, 1453, 1895
BciVI GTATCC 1 cut(s) 1644
BclI TGATCA 1 cut(s) 1416
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 1 cut(s) 1554
BfaI CTAG 6 cut(s) 107, 510, 1511, 1655, 1697, 1901
BfmI CTRYAG 5 cut(s) 205, 640, 1263, 1378, 1858
BfuAI ACCTGC 1 cut(s) 633
BfuI GTATCC 1 cut(s) 1644
BglI GCCNNNNNGGC 1 cut(s) 1658
BlnI CCTAGG 2 cut(s) 106, 1654
BlpI GCTNAGC 2 cut(s) 1542, 2088
Bme1390I CCNGG 6 cut(s) 200, 798, 992, 1218, 1453, 1895
Bme18I GGWCC 4 cut(s) 19, 196, 275, 2046
BmeRI GACNNNNNGTC 1 cut(s) 1149
BmeT110I CYCGRG 2 cut(s) 1536, 2079
BmgT120I GGNCC 5 cut(s) 19, 196, 275, 800, 2046
BmiI GGNNCC 4 cut(s) 491, 1056, 1209, 2047
BmrFI CCNGG 6 cut(s) 200, 798, 992, 1218, 1453, 1895
BmsI GCATC 4 cut(s) 853, 1100, 1480, 1939
BpiI GAAGAC 3 cut(s) 73, 543, 571
BplI GAGNNNNNCTC 2 cut(s) 760, 792
BpmI CTGGAG 2 cut(s) 936, 1200
Bpu10I CCTNAGC 1 cut(s) 180
Bpu1102I GCTNAGC 2 cut(s) 1542, 2088
BpuMI CCSGG 1 cut(s) 992
BsaAI YACGTR 3 cut(s) 629, 1127, 1148
BsaBI GATNNNNATC 1 cut(s) 1256
BsaJI CCNNGG 6 cut(s) 106, 293, 796, 1451, 1654, 1893
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 1314, 1344
Bsc4I CCNNNNNNNGG 9 cut(s) 154, 284, 968, 1217, 1458, 1736, 1849, 2042, 2043
Bse1I ACTGG 2 cut(s) 277, 308
Bse3DI GCAATG 4 cut(s) 228, 1620, 1891, 2019
Bse8I GATNNNNATC 1 cut(s) 1256
BseBI CCWGG 5 cut(s) 200, 798, 1218, 1453, 1895
BseDI CCNNGG 6 cut(s) 106, 293, 796, 1451, 1654, 1893
BseGI GGATG 1 cut(s) 844
BseJI GATNNNNATC 1 cut(s) 1256
BseLI CCNNNNNNNGG 9 cut(s) 154, 284, 968, 1217, 1458, 1736, 1849, 2042, 2043
BseMI GCAATG 4 cut(s) 228, 1620, 1891, 2019
BseMII CTCAG 7 cut(s) 171, 272, 843, 1094, 1724, 1944, 2079
BseNI ACTGG 2 cut(s) 277, 308
BseRI GAGGAG 1 cut(s) 775
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 9 cut(s) 226, 276, 352, 671, 940, 1412, 1415, 1648, 1651
Bsh1236I CGCG 3 cut(s) 153, 349, 1024
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 203, 801, 1619
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 3 cut(s) 48, 1022, 2094
BsiHKCI CYCGRG 2 cut(s) 1536, 2079
BsiSI CCGG 3 cut(s) 17, 73, 992
BslFI GGGAC 3 cut(s) 350, 841, 2059
BslI CCNNNNNNNGG 9 cut(s) 154, 284, 968, 1217, 1458, 1736, 1849, 2042, 2043
BsmAI GTCTC 1 cut(s) 1554
BsmFI GGGAC 3 cut(s) 350, 841, 2059
BsmI GAATGC 2 cut(s) 534, 933
BsnI GGCC 3 cut(s) 203, 801, 1619
BsoBI CYCGRG 2 cut(s) 1536, 2079
Bsp1286I GDGCHC 6 cut(s) 48, 321, 778, 1022, 1212, 2094
Bsp143I GATC 5 cut(s) 75, 987, 1416, 1726, 1924
Bsp1720I GCTNAGC 2 cut(s) 1542, 2088
BspANI GGCC 3 cut(s) 203, 801, 1619
BspCNI CTCAG 7 cut(s) 172, 271, 844, 1093, 1723, 1945, 2080
BspFNI CGCG 3 cut(s) 153, 349, 1024
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 4 cut(s) 491, 1056, 1209, 2047
BspMAI CTGCAG 1 cut(s) 644
BspMI ACCTGC 1 cut(s) 633
BspPI GGATC 4 cut(s) 83, 982, 1721, 1932
BspQI GCTCTTC 1 cut(s) 1010
BsrBI CCGCTC 1 cut(s) 547
BsrDI GCAATG 4 cut(s) 228, 1620, 1891, 2019
BsrI ACTGG 2 cut(s) 277, 308
BssECI CCNNGG 6 cut(s) 106, 293, 796, 1451, 1654, 1893
BssMI GATC 5 cut(s) 75, 987, 1416, 1726, 1924
BssSI CACGAG 1 cut(s) 860
BssT1I CCWWGG 3 cut(s) 106, 293, 1654
Bst2BI CACGAG 1 cut(s) 860
Bst2UI CCWGG 5 cut(s) 200, 798, 1218, 1453, 1895
Bst4CI ACNGT 5 cut(s) 12, 341, 1267, 1292, 1848
Bst6I CTCTTC 2 cut(s) 1010, 1778
BstAPI GCANNNNNTGC 1 cut(s) 1562
BstBAI YACGTR 3 cut(s) 629, 1127, 1148
BstC8I GCNNGC 4 cut(s) 370, 1022, 1495, 1558
BstEII GGTNACC 1 cut(s) 514
BstF5I GGATG 1 cut(s) 844
BstFNI CGCG 3 cut(s) 153, 349, 1024
BstHHI GCGC 2 cut(s) 349, 534
BstKTI GATC 5 cut(s) 78, 990, 1419, 1729, 1927
BstMAI GTCTC 1 cut(s) 1554
BstMBI GATC 5 cut(s) 75, 987, 1416, 1726, 1924
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 7 cut(s) 239, 248, 355, 1562, 1658, 1802, 1904
BstNI CCWGG 5 cut(s) 200, 798, 1218, 1453, 1895
BstNSI RCATGY 3 cut(s) 578, 1039, 1560
BstPI GGTNACC 1 cut(s) 514
BstSCI CCNGG 6 cut(s) 198, 796, 990, 1216, 1451, 1893
BstSFI CTRYAG 5 cut(s) 205, 640, 1263, 1378, 1858
BstSLI GKGCMC 1 cut(s) 321
BstSNI TACGTA 1 cut(s) 1127
BstUI CGCG 3 cut(s) 153, 349, 1024
BstV1I GCAGC 9 cut(s) 226, 276, 352, 671, 940, 1412, 1415, 1648, 1651
BstV2I GAAGAC 3 cut(s) 73, 543, 571
BstX2I RGATCY 1 cut(s) 1924
BstYI RGATCY 1 cut(s) 1924
BsuI GTATCC 1 cut(s) 1644
BsuRI GGCC 3 cut(s) 203, 801, 1619
BtsCI GGATG 1 cut(s) 844
BtsI GCAGTG 2 cut(s) 990, 1567
BtsIMutI CAGTG 5 cut(s) 315, 990, 1567, 1817, 2047
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 4 cut(s) 370, 1022, 1495, 1558
CaiI CAGNNNCTG 3 cut(s) 665, 1406, 2063
CciI TCATGA 1 cut(s) 432
CfoI GCGC 2 cut(s) 349, 534
Cfr13I GGNCC 5 cut(s) 19, 196, 275, 800, 2046
CseI GACGC 1 cut(s) 74
Csp6I GTAC 4 cut(s) 221, 705, 740, 948
CviQI GTAC 4 cut(s) 221, 705, 740, 948
DpnI GATC 5 cut(s) 77, 989, 1418, 1728, 1926
DpnII GATC 5 cut(s) 75, 987, 1416, 1726, 1924
DriI GACNNNNNGTC 1 cut(s) 1149
Eam1104I CTCTTC 2 cut(s) 1010, 1778
Eam1105I GACNNNNNGTC 1 cut(s) 1149
EarI CTCTTC 2 cut(s) 1010, 1778
EciI GGCGGA 3 cut(s) 23, 49, 137
Ecl136II GAGCTC 1 cut(s) 46
Eco105I TACGTA 1 cut(s) 1127
Eco130I CCWWGG 3 cut(s) 106, 293, 1654
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 3 cut(s) 48, 778, 1212
Eco47I GGWCC 4 cut(s) 19, 196, 275, 2046
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 1841
Eco72I CACGTG 1 cut(s) 629
Eco88I CYCGRG 2 cut(s) 1536, 2079
Eco91I GGTNACC 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 1624
EcoRII CCWGG 5 cut(s) 198, 796, 1216, 1451, 1893
EcoT14I CCWWGG 3 cut(s) 106, 293, 1654
EcoT38I GRGCYC 3 cut(s) 48, 778, 1212
ErhI CCWWGG 3 cut(s) 106, 293, 1654
FalI AAGNNNNNCTT 4 cut(s) 454, 486, 1978, 2010
FaqI GGGAC 3 cut(s) 350, 841, 2059
FauNDI CATATG 3 cut(s) 167, 478, 1770
FbaI TGATCA 1 cut(s) 1416
FblI GTMKAC 2 cut(s) 132, 1142
FokI GGATG 1 cut(s) 831
FriOI GRGCYC 3 cut(s) 48, 778, 1212
FspBI CTAG 6 cut(s) 107, 510, 1511, 1655, 1697, 1901
GlaI GCGC 2 cut(s) 348, 533
GsuI CTGGAG 2 cut(s) 936, 1200
HaeIII GGCC 3 cut(s) 203, 801, 1619
HapII CCGG 3 cut(s) 17, 73, 992
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 349, 534
Hin6I GCGC 2 cut(s) 347, 532
HinP1I GCGC 2 cut(s) 347, 532
HincII GTYRAC 1 cut(s) 1143
HindII GTYRAC 1 cut(s) 1143
HindIII AAGCTT 2 cut(s) 674, 1794
HpaII CCGG 3 cut(s) 17, 73, 992
HphI GGTGA 6 cut(s) 46, 82, 508, 1304, 1484, 1989
Hpy166II GTNNAC 3 cut(s) 133, 1143, 1295
Hpy188III TCNNGA 9 cut(s) 433, 539, 596, 915, 1420, 1637, 1730, 1901, 2081
Hpy8I GTNNAC 3 cut(s) 133, 1143, 1295
Hpy99I CGWCG 6 cut(s) 16, 68, 122, 218, 221, 1110
HpyAV CCTTC 7 cut(s) 187, 452, 530, 1013, 1276, 1684, 1909
HpyCH4III ACNGT 5 cut(s) 12, 341, 1267, 1292, 1848
HpyCH4IV ACGT 5 cut(s) 628, 1126, 1147, 1165, 1476
HpyF10VI GCNNNNNNNGC 7 cut(s) 239, 248, 355, 1562, 1658, 1802, 1904
HpySE526I ACGT 5 cut(s) 628, 1126, 1147, 1165, 1476
HspAI GCGC 2 cut(s) 347, 532
Ksp22I TGATCA 1 cut(s) 1416
Kzo9I GATC 5 cut(s) 75, 987, 1416, 1726, 1924
LguI GCTCTTC 1 cut(s) 1010
LmnI GCTCC 6 cut(s) 51, 150, 489, 788, 1060, 1207
Lsp1109I GCAGC 9 cut(s) 226, 276, 352, 671, 940, 1412, 1415, 1648, 1651
LweI GCATC 4 cut(s) 853, 1100, 1480, 1939
MaeI CTAG 6 cut(s) 107, 510, 1511, 1655, 1697, 1901
MaeII ACGT 5 cut(s) 628, 1126, 1147, 1165, 1476
MaeIII GTNAC 6 cut(s) 514, 682, 1151, 1472, 1477, 2027
MalI GATC 5 cut(s) 77, 989, 1418, 1728, 1926
MbiI CCGCTC 1 cut(s) 547
MboI GATC 5 cut(s) 75, 987, 1416, 1726, 1924
MboII GAAGA 7 cut(s) 73, 185, 448, 543, 571, 1027, 1795
MfeI CAATTG 1 cut(s) 1071
MflI RGATCY 1 cut(s) 1924
MhlI GDGCHC 6 cut(s) 48, 321, 778, 1022, 1212, 2094
MlyI GAGTC 7 cut(s) 95, 138, 167, 219, 863, 877, 1148
MmeI TCCRAC 2 cut(s) 123, 1902
MseI TTAA 2 cut(s) 672, 1670
MslI CAYNNNNRTG 2 cut(s) 437, 1979
MspA1I CMGCKG 3 cut(s) 662, 1308, 1406
MspI CCGG 3 cut(s) 17, 73, 992
MspR9I CCNGG 6 cut(s) 200, 798, 992, 1218, 1453, 1895
MunI CAATTG 1 cut(s) 1071
Mva1269I GAATGC 2 cut(s) 534, 933
MvaI CCWGG 5 cut(s) 200, 798, 1218, 1453, 1895
MvnI CGCG 3 cut(s) 153, 349, 1024
MwoI GCNNNNNNNGC 7 cut(s) 239, 248, 355, 1562, 1658, 1802, 1904
NciI CCSGG 1 cut(s) 992
NdeI CATATG 3 cut(s) 167, 478, 1770
NdeII GATC 5 cut(s) 75, 987, 1416, 1726, 1924
NlaIV GGNNCC 4 cut(s) 491, 1056, 1209, 2047
NmuCI GTSAC 3 cut(s) 514, 1151, 1472
NspI RCATGY 3 cut(s) 578, 1039, 1560
OliI CACNNNNGTG 1 cut(s) 1979
PaeI GCATGC 1 cut(s) 1560
PagI TCATGA 1 cut(s) 432
PceI AGGCCT 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 1010
PctI GAATGC 2 cut(s) 534, 933
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 1458
PfoI TCCNGGA 1 cut(s) 1216
PleI GAGTC 7 cut(s) 95, 137, 166, 218, 862, 877, 1147
PmaCI CACGTG 1 cut(s) 629
PmlI CACGTG 1 cut(s) 629
PpsI GAGTC 7 cut(s) 95, 137, 166, 218, 862, 877, 1147
Ppu21I YACGTR 3 cut(s) 629, 1127, 1148
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 5 cut(s) 198, 796, 1216, 1451, 1893
PspCI CACGTG 1 cut(s) 629
PspEI GGTNACC 1 cut(s) 514
PspGI CCWGG 5 cut(s) 198, 796, 1216, 1451, 1893
PspN4I GGNNCC 4 cut(s) 491, 1056, 1209, 2047
PspPI GGNCC 5 cut(s) 19, 196, 275, 800, 2046
PstI CTGCAG 1 cut(s) 644
PstNI CAGNNNCTG 3 cut(s) 665, 1406, 2063
PsuI RGATCY 1 cut(s) 1924
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 4 cut(s) 222, 706, 741, 949
RsaNI GTAC 4 cut(s) 221, 705, 740, 948
RseI CAYNNNNRTG 2 cut(s) 437, 1979
SacI GAGCTC 1 cut(s) 48
SalI GTCGAC 1 cut(s) 1141
SapI GCTCTTC 1 cut(s) 1010
SaqAI TTAA 2 cut(s) 672, 1670
Sau3AI GATC 5 cut(s) 75, 987, 1416, 1726, 1924
Sau96I GGNCC 5 cut(s) 19, 196, 275, 800, 2046
SbfI CCTGCAGG 1 cut(s) 644
SchI GAGTC 7 cut(s) 95, 138, 167, 219, 863, 877, 1148
ScrFI CCNGG 6 cut(s) 200, 798, 992, 1218, 1453, 1895
SdaI CCTGCAGG 1 cut(s) 644
SduI GDGCHC 6 cut(s) 48, 321, 778, 1022, 1212, 2094
SfaNI GCATC 4 cut(s) 853, 1100, 1480, 1939
SfcI CTRYAG 5 cut(s) 205, 640, 1263, 1378, 1858
SinI GGWCC 4 cut(s) 19, 196, 275, 2046
SmiMI CAYNNNNRTG 2 cut(s) 437, 1979
SnaBI TACGTA 1 cut(s) 1127
SphI GCATGC 1 cut(s) 1560
Sse8387I CCTGCAGG 1 cut(s) 644
SseBI AGGCCT 1 cut(s) 203
SspI AATATT 2 cut(s) 400, 1756
SspMI CTAG 6 cut(s) 107, 510, 1511, 1655, 1697, 1901
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 6 cut(s) 198, 796, 990, 1216, 1451, 1893
StyI CCWWGG 3 cut(s) 106, 293, 1654
TaaI ACNGT 5 cut(s) 12, 341, 1267, 1292, 1848
TaiI ACGT 5 cut(s) 631, 1129, 1150, 1168, 1479
TaqI TCGA 4 cut(s) 540, 720, 1065, 1142
TaqII GACCGA 1 cut(s) 141
TauI GCSGC 3 cut(s) 39, 153, 665
Tru1I TTAA 2 cut(s) 672, 1670
Tru9I TTAA 2 cut(s) 672, 1670
TscAI CASTG 5 cut(s) 315, 990, 1567, 1824, 2047
TseFI GTSAC 3 cut(s) 514, 1151, 1472
TseI GCWGC 9 cut(s) 239, 289, 365, 659, 953, 1400, 1403, 1661, 1664
Tsp45I GTSAC 3 cut(s) 514, 1151, 1472
TspDTI ATGAA 7 cut(s) 154, 449, 455, 486, 543, 581, 1455
TspGWI ACGGA 2 cut(s) 291, 692
TspRI CASTG 5 cut(s) 315, 990, 1567, 1824, 2047
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 1458
VpaK11BI GGWCC 4 cut(s) 19, 196, 275, 2046
XapI RAATTY 2 cut(s) 1335, 1624
XbaI TCTAGA 1 cut(s) 1900
XceI RCATGY 3 cut(s) 578, 1039, 1560
XmaJI CCTAGG 2 cut(s) 106, 1654
XmiI GTMKAC 2 cut(s) 132, 1142
XspI CTAG 6 cut(s) 107, 510, 1511, 1655, 1697, 1901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.