Rh1DG048900

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Reverse (-)
7947404 .. 7953724
6321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG048900.1

Sequence Viewer

Length: 1278 bp
ATGATGATGGAAACATTGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGGTGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAACAAGCAGCAGCTGTTGAACTGATCAATATGGTGTTCATTGGGTCGGCTCGGGCTAAGAGGTCTCTTGCACGCAGTGCATACAACAGGGGGCAATATAGAACATCAAAACTTCTGTGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAGGGATATTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTTGATCCAGAAAATGGGGAGGCACGGAATAATATTGCCTGTTTGCATATGATAAAAGGGAAGAGTAAGGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAGCTCGTTCCTTCTCCATTAATAAAACTACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGTCAAGTGCTTTCCTCCAAAGAACTGCACGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATACTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCCACTAATTCATCAATGACTGATGATGCAGATAACTTTCTCGTTAGTGGGACCACAAATGCAGCATCTGAGGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTATACAACAGATAGTTCGGAGTGGAAATGGAACAGATATTTGGGGCTTAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGATCTGATTTGTGGAAAGATAGAGATCAGTTTAAAAAGTTTGTGAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCATCTACTGGCAGCCGTGATGAACTTCTCTCAGCTGAACGGCACCTATGGAACATAATGAAACAGGCGGGGAGTTTCTCAGACATGGAAGAACTTCAACATCTTAAAGCCTGCCTTGATGAAGATGTCTGTTCAACCTTGGTTGTTTTGGCAGGTTTACACCGTGAGCCTTCTAATGACAGGAACACTGGTGGCGTCCTACTTGATCTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

425

Amino Acids

47.65

Weight (kDa)

5.8

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1205
AccB1I GGYRCC 1 cut(s) 1104
AccB7I CCANNNNNTGG 1 cut(s) 470
AciI CCGC 3 cut(s) 106, 133, 1130
AclWI GGATC 3 cut(s) 455, 705, 985
AcsI RAATTY 2 cut(s) 162, 358
AcuI CTGAAG 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 1257
AdeI CACNNNGTG 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 44, 470
AgsI TTSAA 5 cut(s) 239, 358, 562, 1160, 1197
AjnI CCWGG 2 cut(s) 43, 972
AjuI GAANNNNNNNTTGG 4 cut(s) 916, 948, 1013, 1045
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 8 cut(s) 233, 457, 530, 565, 600, 863, 947, 1097
AluI AGCT 8 cut(s) 233, 457, 530, 565, 600, 863, 947, 1097
Alw21I GWGCWC 1 cut(s) 870
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 3 cut(s) 455, 705, 985
AlwNI CAGNNNCTG 2 cut(s) 233, 839
Ama87I CYCGRG 2 cut(s) 270, 855
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 6 cut(s) 227, 230, 395, 398, 833, 1074
ApoI RAATTY 2 cut(s) 162, 358
AseI ATTAAT 1 cut(s) 581
Asp700I GAANNNNTTC 1 cut(s) 1155
AspA2I CCTAGG 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 822
AsuHPI GGTGA 2 cut(s) 131, 762
AvaI CYCGRG 2 cut(s) 270, 855
AvaII GGWCC 1 cut(s) 822
AvrII CCTAGG 1 cut(s) 388
BanI GGYRCC 1 cut(s) 1104
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 870
BbvI GCAGC 6 cut(s) 239, 242, 382, 385, 845, 1086
BccI CCATC 2 cut(s) 368, 428
BceAI ACGGC 2 cut(s) 1062, 1118
BciT130I CCWGG 2 cut(s) 45, 974
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 389, 431
BfmI CTRYAG 3 cut(s) 90, 205, 619
BfuAI ACCTGC 1 cut(s) 1205
BfuI GTATCC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 6 cut(s) 228, 231, 396, 399, 834, 1075
BlnI CCTAGG 1 cut(s) 388
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 6 cut(s) 229, 232, 397, 400, 835, 1076
Bme1390I CCNGG 2 cut(s) 45, 974
Bme18I GGWCC 1 cut(s) 822
BmeT110I CYCGRG 2 cut(s) 270, 855
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 3 cut(s) 36, 823, 1106
BmrFI CCNGG 2 cut(s) 45, 974
BmsI GCATC 2 cut(s) 787, 845
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 864
BsaBI GATNNNNATC 2 cut(s) 83, 999
BsaHI GRCGYC 1 cut(s) 1257
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 5 cut(s) 388, 883, 973, 1029, 1200
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 470
Bse1I ACTGG 2 cut(s) 1075, 1255
Bse3DI GCAATG 3 cut(s) 354, 534, 652
Bse8I GATNNNNATC 2 cut(s) 83, 999
BseBI CCWGG 2 cut(s) 45, 974
BseDI CCNNGG 5 cut(s) 388, 883, 973, 1029, 1200
BseJI GATNNNNATC 2 cut(s) 83, 999
BseLI CCNNNNNNNGG 2 cut(s) 44, 470
BseMI GCAATG 3 cut(s) 354, 534, 652
BseMII CTCAG 6 cut(s) 668, 717, 831, 855, 1107, 1155
BseNI ACTGG 2 cut(s) 1075, 1255
BseXI GCAGC 6 cut(s) 239, 242, 382, 385, 845, 1086
BsgI GTGCAG 1 cut(s) 666
BshFI GGCC 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 1104
BsiHKAI GWGCWC 1 cut(s) 870
BsiHKCI CYCGRG 2 cut(s) 270, 855
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 2 cut(s) 44, 470
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 1 cut(s) 353
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 2 cut(s) 270, 855
Bsp1286I GDGCHC 2 cut(s) 39, 870
Bsp143I GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 3 cut(s) 106, 133, 1130
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 6 cut(s) 667, 718, 832, 856, 1106, 1154
BspLI GGNNCC 3 cut(s) 36, 823, 1106
BspMI ACCTGC 1 cut(s) 1205
BspPI GGATC 3 cut(s) 455, 705, 985
BspT107I GGYRCC 1 cut(s) 1104
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 3 cut(s) 354, 534, 652
BsrI ACTGG 2 cut(s) 1075, 1255
BssECI CCNNGG 5 cut(s) 388, 883, 973, 1029, 1200
BssMI GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
BssNI GRCGYC 1 cut(s) 1257
BssT1I CCWWGG 4 cut(s) 388, 883, 1029, 1200
Bst2UI CCWGG 2 cut(s) 45, 974
Bst4CI ACNGT 4 cut(s) 94, 119, 609, 1226
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 1257
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 292, 1174
BstDEI CTNAG 9 cut(s) 276, 654, 726, 840, 864, 871, 940, 1093, 1141
BstKTI GATC 7 cut(s) 246, 463, 700, 968, 980, 1003, 1270
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
BstMWI GCNNNNNNNGC 3 cut(s) 296, 392, 536
BstNI CCWGG 2 cut(s) 45, 974
BstSCI CCNGG 2 cut(s) 43, 972
BstSFI CTRYAG 3 cut(s) 90, 205, 619
BstV1I GCAGC 6 cut(s) 239, 242, 382, 385, 845, 1086
BstX2I RGATCY 2 cut(s) 697, 977
BstYI RGATCY 2 cut(s) 697, 977
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 301, 551, 1248
BveI ACCTGC 1 cut(s) 1205
Cac8I GCNNGC 2 cut(s) 292, 1174
CaiI CAGNNNCTG 2 cut(s) 233, 839
Cfr13I GGNCC 1 cut(s) 822
CseI GACGC 1 cut(s) 1246
CviAII CATG 3 cut(s) 626, 763, 1147
DdeI CTNAG 9 cut(s) 276, 654, 726, 840, 864, 871, 940, 1093, 1141
DpnI GATC 7 cut(s) 245, 462, 699, 967, 979, 1002, 1269
DpnII GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
DraI TTTAAA 1 cut(s) 1009
DraIII CACNNNGTG 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco130I CCWWGG 4 cut(s) 388, 883, 1029, 1200
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 822
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 2 cut(s) 270, 855
EcoRI GAATTC 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 43, 972
EcoT14I CCWWGG 4 cut(s) 388, 883, 1029, 1200
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 4 cut(s) 388, 883, 1029, 1200
FaeI CATG 3 cut(s) 629, 766, 1150
FalI AAGNNNNNCTT 4 cut(s) 751, 783, 1161, 1193
FaqI GGGAC 1 cut(s) 835
FatI CATG 3 cut(s) 625, 762, 1146
FauI CCCGC 1 cut(s) 1123
FauNDI CATATG 1 cut(s) 504
FbaI TGATCA 1 cut(s) 243
Fnu4HI GCNGC 6 cut(s) 228, 231, 396, 399, 834, 1075
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 6 cut(s) 228, 231, 396, 399, 834, 1075
FspBI CTAG 2 cut(s) 389, 431
GluI GCNGC 6 cut(s) 228, 231, 396, 399, 834, 1075
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 353
HgaI GACGC 1 cut(s) 1246
Hin1I GRCGYC 1 cut(s) 1257
Hin1II CATG 3 cut(s) 629, 766, 1150
HindIII AAGCTT 2 cut(s) 528, 945
HinfI GANTC 2 cut(s) 61, 341
HphI GGTGA 2 cut(s) 131, 762
Hpy166II GTNNAC 2 cut(s) 122, 1220
Hpy188I TCNGA 6 cut(s) 144, 841, 912, 965, 982, 1144
Hpy188III TCNNGA 3 cut(s) 371, 464, 857
Hpy8I GTNNAC 2 cut(s) 122, 1220
HpyAV CCTTC 5 cut(s) 103, 418, 582, 682, 1242
HpyCH4III ACNGT 4 cut(s) 94, 119, 609, 1226
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 392, 536
HpyF3I CTNAG 9 cut(s) 276, 654, 726, 840, 864, 871, 940, 1093, 1141
Hsp92I GRCGYC 1 cut(s) 1257
Hsp92II CATG 3 cut(s) 629, 766, 1150
Ksp22I TGATCA 1 cut(s) 243
Kzo9I GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
LmnI GCTCC 1 cut(s) 34
Lsp1109I GCAGC 6 cut(s) 239, 242, 382, 385, 845, 1086
LweI GCATC 2 cut(s) 787, 845
MaeI CTAG 2 cut(s) 389, 431
MalI GATC 7 cut(s) 245, 462, 699, 967, 979, 1002, 1269
MboI GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
MboII GAAGA 5 cut(s) 529, 1053, 1163, 1196, 1262
MflI RGATCY 2 cut(s) 697, 977
MhlI GDGCHC 2 cut(s) 39, 870
MluCI AATT 6 cut(s) 162, 179, 358, 717, 741, 778
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 9 cut(s) 49, 145, 163, 273, 469, 680, 745, 835, 1036
MroXI GAANNNNTTC 1 cut(s) 1155
MseI TTAA 5 cut(s) 404, 581, 953, 1008, 1167
MspA1I CMGCKG 3 cut(s) 135, 233, 1097
MspR9I CCNGG 2 cut(s) 45, 974
MvaI CCWGG 2 cut(s) 45, 974
MwoI GCNNNNNNNGC 3 cut(s) 296, 392, 536
NdeI CATATG 1 cut(s) 504
NdeII GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
NlaIII CATG 3 cut(s) 629, 766, 1150
NlaIV GGNNCC 3 cut(s) 36, 823, 1106
PdmI GAANNNNTTC 1 cut(s) 1155
PfeI GAWTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 470
PfoI TCCNGGA 1 cut(s) 43
PkrI GCNGC 6 cut(s) 229, 232, 397, 400, 835, 1076
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
PshBI ATTAAT 1 cut(s) 581
Psp6I CCWGG 2 cut(s) 43, 972
PspGI CCWGG 2 cut(s) 43, 972
PspN4I GGNNCC 3 cut(s) 36, 823, 1106
PspPI GGNCC 1 cut(s) 822
PstNI CAGNNNCTG 2 cut(s) 233, 839
PsuI RGATCY 2 cut(s) 697, 977
PvuII CAGCTG 2 cut(s) 233, 1097
SaqAI TTAA 5 cut(s) 404, 581, 953, 1008, 1167
SatI GCNGC 6 cut(s) 228, 231, 396, 399, 834, 1075
Sau3AI GATC 7 cut(s) 243, 460, 697, 965, 977, 1000, 1267
Sau96I GGNCC 1 cut(s) 822
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 45, 974
SduI GDGCHC 2 cut(s) 39, 870
SfaNI GCATC 2 cut(s) 787, 845
SfcI CTRYAG 3 cut(s) 90, 205, 619
SinI GGWCC 1 cut(s) 822
Sse9I AATT 6 cut(s) 162, 179, 358, 717, 741, 778
SsiI CCGC 3 cut(s) 106, 133, 1130
SspI AATATT 2 cut(s) 198, 490
SspMI CTAG 2 cut(s) 389, 431
StyD4I CCNGG 2 cut(s) 43, 972
StyI CCWWGG 4 cut(s) 388, 883, 1029, 1200
TaaI ACNGT 4 cut(s) 94, 119, 609, 1226
TasI AATT 6 cut(s) 162, 179, 358, 717, 741, 778
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 5 cut(s) 404, 581, 953, 1008, 1167
Tru9I TTAA 5 cut(s) 404, 581, 953, 1008, 1167
TscAI CASTG 3 cut(s) 301, 558, 1255
TseI GCWGC 6 cut(s) 227, 230, 395, 398, 833, 1074
TspDTI ATGAA 8 cut(s) 247, 523, 771, 1053, 1098, 1136, 1197, 1262
TspGWI ACGGA 2 cut(s) 496, 700
TspRI CASTG 3 cut(s) 301, 558, 1255
Van91I CCANNNNNTGG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 822
VspI ATTAAT 1 cut(s) 581
XapI RAATTY 2 cut(s) 162, 358
XmaJI CCTAGG 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 1155
XspI CTAG 2 cut(s) 389, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.