RchiOBHm_Chr1g0320761

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000877
Physical Location & Seq
Reverse (-)
8332803 .. 8339850
7048 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55088

Sequence Viewer

Length: 735 bp
ATGGTCTTTTGCGTTTCCATGAAATTCTTAACTTCAGCCGCCGCTTCACAGGTACAAGTAGGAAAGGAACAGAGAGCATCCTTTTCATCCCATAGGCTTTTGAGTTTTGTGAAGAAGGAAGTGACTGAGTTTGTGCCCTGCTCACATTCATGTATGGCGTTCTCTATATGGAACAATAAAACCGTATTAGTGTGGGAGAATCTCTCTTGCAACTCTAACCACATACCTCTTGCATCCTTGCAATGGATGACACTGCTCGAGATGTCTTTTGACATAGCTCCTAGCAACCAAGTTTTGACAAGGACGTTGCATCGGTCCCATTGCAGTTGTTCATTAGGATTCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCAAGTGCTTTCCTCCAAAGAACATCTGAGGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTATACAACAGATTAAACTGAAAGGAGACCTCTCAATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGATCTGATTTGTGGAATGATAGAGATCAGTTTAAAAAGTTTGTGAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCATCTACTGGCAGCCGTGATGAACTTCTCTCAGCTGAACGGCACCTATGGAACATAATGAAACAGGCAAGACTTGGCATTTCAGAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

244

Amino Acids

27.8

Weight (kDa)

8.61

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 684
AciI CCGC 2 cut(s) 39, 42
AclWI GGATC 1 cut(s) 565
AcsI RAATTY 1 cut(s) 23
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 243
AjnI CCWGG 1 cut(s) 552
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 4 cut(s) 278, 449, 527, 677
AluI AGCT 4 cut(s) 278, 449, 527, 677
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 1 cut(s) 565
Ama87I CYCGRG 2 cut(s) 257, 441
ApeKI GCWGC 1 cut(s) 654
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 315
AvaI CYCGRG 2 cut(s) 257, 441
AvaII GGWCC 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 666
BceAI ACGGC 2 cut(s) 642, 698
BciT130I CCWGG 1 cut(s) 554
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 361
BisI GCNGC 3 cut(s) 39, 42, 655
BlpI GCTNAGC 1 cut(s) 450
BlsI GCNGC 3 cut(s) 40, 43, 656
Bme1390I CCNGG 1 cut(s) 554
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 2 cut(s) 257, 441
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 317, 686
BmrFI CCNGG 1 cut(s) 554
BmsI GCATC 3 cut(s) 86, 242, 319
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 469, 553, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 3 cut(s) 248, 319, 394
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 3 cut(s) 469, 553, 609
BseGI GGATG 4 cut(s) 77, 86, 233, 252
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 3 cut(s) 248, 319, 394
BseMII CTCAG 5 cut(s) 117, 410, 417, 441, 687
BseNI ACTGG 1 cut(s) 655
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 666
BsgI GTGCAG 1 cut(s) 538
BshNI GGYRCC 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 456
BsiHKCI CYCGRG 2 cut(s) 257, 441
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 301
Bso31I GGTCTC 1 cut(s) 498
BsoBI CYCGRG 2 cut(s) 257, 441
Bsp1286I GDGCHC 2 cut(s) 138, 456
Bsp143I GATC 3 cut(s) 545, 557, 580
Bsp1720I GCTNAGC 1 cut(s) 450
BspACI CCGC 2 cut(s) 39, 42
BspCNI CTCAG 5 cut(s) 118, 409, 418, 442, 686
BspLI GGNNCC 2 cut(s) 317, 686
BspPI GGATC 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 684
BspTNI GGTCTC 1 cut(s) 498
BsrDI GCAATG 3 cut(s) 248, 319, 394
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 3 cut(s) 469, 553, 609
BssMI GATC 3 cut(s) 545, 557, 580
BssT1I CCWWGG 2 cut(s) 469, 609
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 184, 351
BstDEI CTNAG 6 cut(s) 126, 396, 426, 450, 457, 673
BstF5I GGATG 4 cut(s) 77, 86, 233, 252
BstKTI GATC 3 cut(s) 548, 560, 583
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 3 cut(s) 545, 557, 580
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 1 cut(s) 552
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 666
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BtsCI GGATG 4 cut(s) 77, 86, 233, 252
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 53
CviAII CATG 3 cut(s) 19, 150, 368
CviJI RGCY 8 cut(s) 38, 97, 278, 366, 449, 527, 657, 677
CviKI_1 RGCY 8 cut(s) 38, 97, 278, 366, 449, 527, 657, 677
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 6 cut(s) 126, 396, 426, 450, 457, 673
DpnI GATC 3 cut(s) 547, 559, 582
DpnII GATC 3 cut(s) 545, 557, 580
DraI TTTAAA 1 cut(s) 589
Eco130I CCWWGG 2 cut(s) 469, 609
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 18
Eco88I CYCGRG 2 cut(s) 257, 441
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 2 cut(s) 469, 609
ErhI CCWWGG 2 cut(s) 469, 609
FaeI CATG 3 cut(s) 22, 153, 371
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 18, 149, 367
Fnu4HI GCNGC 3 cut(s) 39, 42, 655
FokI GGATG 4 cut(s) 64, 73, 220, 259
Fsp4HI GCNGC 3 cut(s) 39, 42, 655
FspBI CTAG 1 cut(s) 282
GluI GCNGC 3 cut(s) 39, 42, 655
Hin1II CATG 3 cut(s) 22, 153, 371
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 2 cut(s) 199, 339
Hpy188I TCNGA 4 cut(s) 427, 545, 562, 727
Hpy188III TCNNGA 2 cut(s) 259, 443
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 184, 351
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 7 cut(s) 210, 233, 241, 310, 324, 519, 621
HpyF3I CTNAG 6 cut(s) 126, 396, 426, 450, 457, 673
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 3 cut(s) 22, 153, 371
Kzo9I GATC 3 cut(s) 545, 557, 580
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 7 cut(s) 35, 151, 383, 539, 566, 636, 692
Lsp1109I GCAGC 1 cut(s) 666
LweI GCATC 3 cut(s) 86, 242, 319
MaeI CTAG 1 cut(s) 282
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 121
MalI GATC 3 cut(s) 547, 559, 582
MboI GATC 3 cut(s) 545, 557, 580
MboII GAAGA 2 cut(s) 124, 633
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 2 cut(s) 138, 456
MluCI AATT 1 cut(s) 23
MnlI CCTC 5 cut(s) 237, 421, 422, 518, 616
MseI TTAA 5 cut(s) 29, 492, 533, 588, 733
MslI CAYNNNNRTG 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 554
MvaI CCWGG 1 cut(s) 554
NdeII GATC 3 cut(s) 545, 557, 580
NlaIII CATG 3 cut(s) 22, 153, 371
NlaIV GGNNCC 2 cut(s) 317, 686
NmuCI GTSAC 1 cut(s) 121
PaeR7I CTCGAG 1 cut(s) 257
PfeI GAWTC 2 cut(s) 199, 339
PkrI GCNGC 3 cut(s) 40, 43, 656
Psp6I CCWGG 1 cut(s) 552
PspGI CCWGG 1 cut(s) 552
PspN4I GGNNCC 2 cut(s) 317, 686
PspPI GGNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 557
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 148
SaqAI TTAA 5 cut(s) 29, 492, 533, 588, 733
SatI GCNGC 3 cut(s) 39, 42, 655
Sau3AI GATC 3 cut(s) 545, 557, 580
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 554
SduI GDGCHC 2 cut(s) 138, 456
SfaNI GCATC 3 cut(s) 86, 242, 319
SfcI CTRYAG 1 cut(s) 361
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 23
SsiI CCGC 2 cut(s) 39, 42
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 552
StyI CCWWGG 2 cut(s) 469, 609
TaaI ACNGT 2 cut(s) 184, 351
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 258
TaqII GACCGA 1 cut(s) 303
TasI AATT 1 cut(s) 23
TauI GCSGC 2 cut(s) 41, 44
TfiI GAWTC 2 cut(s) 199, 339
Tru1I TTAA 5 cut(s) 29, 492, 533, 588, 733
Tru9I TTAA 5 cut(s) 29, 492, 533, 588, 733
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 654
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 7 cut(s) 35, 75, 138, 321, 633, 678, 716
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 257
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.