Rmu_sc0003446.1_g000001

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003446.1
OG0000877
Physical Location & Seq
Reverse (-)
1 .. 3358
3358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003446.1_g000001.1.cds

Sequence Viewer

Length: 1247 bp
ccgccctcctcacttccatcgagtccggccgatacctcgaagccctcacctccgccgacgcaaaccggctcgtcttcaagctcaccgattccgactccctcggcgaccacgacggcgaccgagtctactccgagttgctccgccgcgtggagtcgttcttatgcgaagaggctgaggataatgggaaggaccaggcctatagagtcgtcgtcgtactctgcattgccgtagctgccttacttgctttcactcagtccgagttcaatgaaattatatttcttttttctttttcaatttctaattttcggtttcaattgggaattttgaaaggtctagggccctctgccaaggtgtccgttgatgaatgggacaattgggcgaggaatcagcttatggctactggctctgacttgcttggaaaggtctataatattcaggcacgaaattcggcatttccaaaactagcttggtgttataacttaggtaactatattttagaaaatgcgatttctttaccatattgggaacatatgagaagctttatttggcagtatgagaagtggtatttgttgggaagatcaggggtcacctttctccatcagcgcattctcgatgagcggtcttcatctctgttcaaccttttgcatgtctttacaagtgaaactttgaatcattttggcacgttggagaaagtaacaagttattggggtaacgatttgcgtaatggcgagggatcgacactcgtcacagtgattcatctggaagctggaatgatggaatacatctatgcacgtgttgattcatgcagtgcttggggtgatattgttccagctcaagtggttcagggcatcaacgatccctctccaggagtggcagtcaggattcctttctgctatgggatttatatccctacagtttcagccttgcggaaggaatacggtgaactttgtgtccgctgtggtctgataggagaggcagtcaaaatttttgaggacttggaattatgggataatctaatattctgctatagcctattggagaaaaaagcagcagctgttgaactgatcaagacacggctttctgaaacacctaatgaccccaggttatggtgttcgttgggtgacgttactgatgatgatgcctgctttgaaaaagccctagaagtctcaaacgatagggagtctgcaatggccttgaattctctgtatcctgatggctggttcgccctaggggctgctgcattaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

415

Amino Acids

46.62

Weight (kDa)

4.79

Isoelectric Point (pI)

24.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 1106
AccBSI CCGCTC 1 cut(s) 618
AccI GTMKAC 1 cut(s) 125
AccII CGCG 1 cut(s) 146
AciI CCGC 7 cut(s) 2, 53, 141, 144, 618, 927, 954
AclWI GGATC 2 cut(s) 741, 850
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 4 cut(s) 320, 444, 983, 1197
AcvI CACGTG 1 cut(s) 793
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 147, 865, 1106
AflIII ACRYGT 1 cut(s) 792
AjnI CCWGG 3 cut(s) 191, 864, 1099
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AloI GAACNNNNNNTCC 2 cut(s) 935, 967
AluBI AGCT 8 cut(s) 81, 232, 390, 466, 539, 766, 832, 1054
AluI AGCT 8 cut(s) 81, 232, 390, 466, 539, 766, 832, 1054
Alw26I GTCTC 1 cut(s) 1170
AlwI GGATC 2 cut(s) 741, 850
AlwNI CAGNNNCTG 1 cut(s) 1054
AoxI GGCC 4 cut(s) 27, 194, 337, 1190
ApaI GGGCCC 1 cut(s) 341
ApeKI GCWGC 5 cut(s) 232, 1048, 1051, 1234, 1237
ApoI RAATTY 4 cut(s) 320, 444, 983, 1197
AspA2I CCTAGG 1 cut(s) 1227
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 3 cut(s) 189, 337, 338
AsuHPI GGTGA 6 cut(s) 39, 75, 579, 829, 952, 1132
AvaII GGWCC 1 cut(s) 189
AvrII CCTAGG 1 cut(s) 1227
BaeGI GKGCMC 1 cut(s) 341
BanII GRGCYC 1 cut(s) 341
BbrPI CACGTG 1 cut(s) 793
BbsI GAAGAC 2 cut(s) 66, 614
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 5 cut(s) 219, 1060, 1063, 1221, 1224
BccI CCATC 4 cut(s) 25, 605, 768, 1207
BceAI ACGGC 3 cut(s) 129, 211, 1090
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 3 cut(s) 193, 866, 1101
BciVI GTATCC 1 cut(s) 1217
BclI TGATCA 1 cut(s) 1064
BcoDI GTCTC 1 cut(s) 1170
BfaI CTAG 4 cut(s) 334, 463, 1159, 1228
BfmI CTRYAG 3 cut(s) 198, 911, 1026
BfuI GTATCC 1 cut(s) 1217
BglI GCCNNNNNGGC 1 cut(s) 1231
BisI GCNGC 6 cut(s) 144, 233, 1049, 1052, 1235, 1238
BlnI CCTAGG 1 cut(s) 1227
BlsI GCNGC 6 cut(s) 145, 234, 1050, 1053, 1236, 1239
Bme1390I CCNGG 3 cut(s) 193, 866, 1101
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 3 cut(s) 189, 337, 338
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 3 cut(s) 193, 866, 1101
BmsI GCATC 2 cut(s) 857, 1128
BoxI GACNNNNGTC 1 cut(s) 742
BpiI GAAGAC 2 cut(s) 66, 614
BpmI CTGGAG 1 cut(s) 848
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 818
BsaAI YACGTR 1 cut(s) 793
BsaBI GATNNNNATC 1 cut(s) 904
BsaJI CCNNGG 4 cut(s) 99, 347, 1099, 1227
BsaXI ACNNNNNCTCC 4 cut(s) 860, 890, 962, 992
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 865, 1106
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 2 cut(s) 221, 1193
Bse8I GATNNNNATC 1 cut(s) 904
BseBI CCWGG 3 cut(s) 193, 866, 1101
BseDI CCNNGG 4 cut(s) 99, 347, 1099, 1227
BseJI GATNNNNATC 1 cut(s) 904
BseLI CCNNNNNNNGG 3 cut(s) 147, 865, 1106
BseMI GCAATG 2 cut(s) 221, 1193
BseMII CTCAG 2 cut(s) 164, 265
BseNI ACTGG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 341
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 5 cut(s) 219, 1060, 1063, 1221, 1224
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 2 cut(s) 30, 120
BshFI GGCC 4 cut(s) 29, 196, 339, 1192
BsiEI CGRYCG 2 cut(s) 30, 120
BsiSI CCGG 2 cut(s) 26, 66
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 3 cut(s) 147, 865, 1106
BsmAI GTCTC 1 cut(s) 1170
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 4 cut(s) 29, 196, 339, 1192
Bsp120I GGGCCC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 4 cut(s) 577, 733, 855, 1064
BspACI CCGC 7 cut(s) 2, 53, 141, 144, 618, 927, 954
BspANI GGCC 4 cut(s) 29, 196, 339, 1192
BspCNI CTCAG 2 cut(s) 165, 264
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 2 cut(s) 741, 850
BsrBI CCGCTC 1 cut(s) 618
BsrDI GCAATG 2 cut(s) 221, 1193
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 405
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 99, 347, 1099, 1227
BssMI GATC 4 cut(s) 577, 733, 855, 1064
BssT1I CCWWGG 2 cut(s) 347, 1227
Bst2UI CCWGG 3 cut(s) 193, 866, 1101
Bst4CI ACNGT 3 cut(s) 750, 915, 940
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 793
BstC8I GCNNGC 1 cut(s) 1143
BstDEI CTNAG 3 cut(s) 173, 251, 480
BstEII GGTNACC 1 cut(s) 585
BstFNI CGCG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 4 cut(s) 580, 736, 858, 1067
BstMAI GTCTC 1 cut(s) 1170
BstMBI GATC 4 cut(s) 577, 733, 855, 1064
BstMCI CGRYCG 2 cut(s) 30, 120
BstMWI GCNNNNNNNGC 3 cut(s) 232, 241, 1231
BstNI CCWGG 3 cut(s) 193, 866, 1101
BstNSI RCATGY 1 cut(s) 649
BstPAI GACNNNNGTC 1 cut(s) 742
BstPI GGTNACC 1 cut(s) 585
BstSCI CCNGG 3 cut(s) 191, 864, 1099
BstSFI CTRYAG 3 cut(s) 198, 911, 1026
BstSLI GKGCMC 1 cut(s) 341
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 5 cut(s) 219, 1060, 1063, 1221, 1224
BstV2I GAAGAC 2 cut(s) 66, 614
BstZI CGGCCG 1 cut(s) 27
BsuI GTATCC 1 cut(s) 1217
BsuRI GGCC 4 cut(s) 29, 196, 339, 1192
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 2 cut(s) 755, 813
Cac8I GCNNGC 1 cut(s) 1143
CaiI CAGNNNCTG 1 cut(s) 1054
CfoI GCGC 1 cut(s) 605
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 189, 337, 338
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 214
CviAII CATG 2 cut(s) 646, 803
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 3 cut(s) 173, 251, 480
DpnI GATC 4 cut(s) 579, 735, 857, 1066
DpnII GATC 4 cut(s) 577, 733, 855, 1064
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 2 cut(s) 42, 130
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 347, 1227
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 341
Eco47I GGWCC 1 cut(s) 189
Eco52I CGGCCG 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 793
Eco91I GGTNACC 1 cut(s) 585
EcoO109I RGGNCCY 2 cut(s) 337, 338
EcoO65I GGTNACC 1 cut(s) 585
EcoRI GAATTC 1 cut(s) 1197
EcoRII CCWGG 3 cut(s) 191, 864, 1099
EcoT14I CCWWGG 2 cut(s) 347, 1227
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 2 cut(s) 347, 1227
FaeI CATG 2 cut(s) 649, 806
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 1 cut(s) 382
FatI CATG 2 cut(s) 645, 802
FauNDI CATATG 1 cut(s) 530
FbaI TGATCA 1 cut(s) 1064
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 6 cut(s) 144, 233, 1049, 1052, 1235, 1238
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 6 cut(s) 144, 233, 1049, 1052, 1235, 1238
FspBI CTAG 4 cut(s) 334, 463, 1159, 1228
GlaI GCGC 1 cut(s) 604
GluI GCNGC 6 cut(s) 144, 233, 1049, 1052, 1235, 1238
GsuI CTGGAG 1 cut(s) 848
HaeIII GGCC 4 cut(s) 29, 196, 339, 1192
HapII CCGG 2 cut(s) 26, 66
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 605
Hin1II CATG 2 cut(s) 649, 806
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HindIII AAGCTT 1 cut(s) 537
HpaII CCGG 2 cut(s) 26, 66
HphI GGTGA 6 cut(s) 39, 75, 579, 829, 952, 1132
Hpy166II GTNNAC 2 cut(s) 126, 943
Hpy188I TCNGA 6 cut(s) 93, 132, 258, 408, 965, 1083
Hpy188III TCNNGA 5 cut(s) 610, 760, 879, 1068, 1210
Hpy8I GTNNAC 2 cut(s) 126, 943
Hpy99I CGWCG 4 cut(s) 61, 115, 211, 214
HpyAV CCTTC 2 cut(s) 180, 924
HpyCH4III ACNGT 3 cut(s) 750, 915, 940
HpyCH4IV ACGT 3 cut(s) 682, 792, 1124
HpyCH4V TGCA 6 cut(s) 221, 645, 790, 806, 1186, 1240
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 241, 1231
HpyF3I CTNAG 3 cut(s) 173, 251, 480
HpySE526I ACGT 3 cut(s) 682, 792, 1124
Hsp92II CATG 2 cut(s) 649, 806
HspAI GCGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 1064
Kzo9I GATC 4 cut(s) 577, 733, 855, 1064
LmnI GCTCC 1 cut(s) 143
Lsp1109I GCAGC 5 cut(s) 219, 1060, 1063, 1221, 1224
LweI GCATC 2 cut(s) 857, 1128
MaeI CTAG 4 cut(s) 334, 463, 1159, 1228
MaeII ACGT 3 cut(s) 682, 792, 1124
MaeIII GTNAC 7 cut(s) 484, 585, 693, 709, 744, 1120, 1125
MalI GATC 4 cut(s) 579, 735, 857, 1066
MbiI CCGCTC 1 cut(s) 618
MboI GATC 4 cut(s) 577, 733, 855, 1064
MboII GAAGA 4 cut(s) 66, 178, 587, 614
MfeI CAATTG 2 cut(s) 313, 372
MhlI GDGCHC 1 cut(s) 341
MlyI GAGTC 6 cut(s) 31, 88, 131, 160, 212, 1189
MmeI TCCRAC 2 cut(s) 116, 665
MseI TTAA 1 cut(s) 1243
MspA1I CMGCKG 2 cut(s) 956, 1054
MspI CCGG 2 cut(s) 26, 66
MspR9I CCNGG 3 cut(s) 193, 866, 1101
MunI CAATTG 2 cut(s) 313, 372
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 3 cut(s) 193, 866, 1101
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 232, 241, 1231
NdeI CATATG 1 cut(s) 530
NdeII GATC 4 cut(s) 577, 733, 855, 1064
NlaIII CATG 2 cut(s) 649, 806
NlaIV GGNNCC 1 cut(s) 339
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 3 cut(s) 585, 744, 1120
NspI RCATGY 1 cut(s) 649
PceI AGGCCT 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 1 cut(s) 605
PfeI GAWTC 6 cut(s) 88, 384, 669, 753, 799, 882
PflFI GACNNNGTC 1 cut(s) 121
PflMI CCANNNNNTGG 1 cut(s) 1106
PfoI TCCNGGA 1 cut(s) 864
PkrI GCNGC 6 cut(s) 145, 234, 1050, 1053, 1236, 1239
PleI GAGTC 6 cut(s) 30, 88, 130, 159, 211, 1188
PmaCI CACGTG 1 cut(s) 793
PmlI CACGTG 1 cut(s) 793
PpsI GAGTC 6 cut(s) 30, 88, 130, 159, 211, 1188
Ppu21I YACGTR 1 cut(s) 793
PshAI GACNNNNGTC 1 cut(s) 742
PsiI TTATAA 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 191, 864, 1099
PspCI CACGTG 1 cut(s) 793
PspEI GGTNACC 1 cut(s) 585
PspGI CCWGG 3 cut(s) 191, 864, 1099
PspN4I GGNNCC 1 cut(s) 339
PspOMI GGGCCC 1 cut(s) 337
PspPI GGNCC 3 cut(s) 189, 337, 338
PstNI CAGNNNCTG 1 cut(s) 1054
PsyI GACNNNGTC 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 1054
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 1243
SatI GCNGC 6 cut(s) 144, 233, 1049, 1052, 1235, 1238
Sau3AI GATC 4 cut(s) 577, 733, 855, 1064
Sau96I GGNCC 3 cut(s) 189, 337, 338
SchI GAGTC 6 cut(s) 31, 88, 131, 160, 212, 1189
ScrFI CCNGG 3 cut(s) 193, 866, 1101
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 2 cut(s) 857, 1128
SfcI CTRYAG 3 cut(s) 198, 911, 1026
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 7 cut(s) 2, 53, 141, 144, 618, 927, 954
SspI AATATT 2 cut(s) 432, 1019
SspMI CTAG 4 cut(s) 334, 463, 1159, 1228
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 3 cut(s) 191, 864, 1099
StyI CCWWGG 2 cut(s) 347, 1227
TaaI ACNGT 3 cut(s) 750, 915, 940
TaiI ACGT 3 cut(s) 685, 795, 1127
TaqI TCGA 4 cut(s) 20, 38, 611, 736
TaqII GACCGA 1 cut(s) 134
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 6 cut(s) 88, 384, 669, 753, 799, 882
Tru1I TTAA 1 cut(s) 1243
Tru9I TTAA 1 cut(s) 1243
TscAI CASTG 2 cut(s) 755, 813
TseFI GTSAC 3 cut(s) 585, 744, 1120
TseI GCWGC 5 cut(s) 232, 1048, 1051, 1234, 1237
Tsp45I GTSAC 3 cut(s) 585, 744, 1120
TspDTI ATGAA 5 cut(s) 281, 377, 614, 745, 791
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 2 cut(s) 755, 813
Tth111I GACNNNGTC 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 1106
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 4 cut(s) 320, 444, 983, 1197
XceI RCATGY 1 cut(s) 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmaJI CCTAGG 1 cut(s) 1227
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 4 cut(s) 334, 463, 1159, 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.