Rh1DG047800

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000877
Physical Location & Seq
Reverse (-)
7813677 .. 7864627
50951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG047800.1

Sequence Viewer

Length: 3054 bp
ATGAACTCCGAAATAGATGACATTGCTAACCGCTTGCAAGACATATTTGACCGGAAAAAGAAACTCGGTTTGAAATATATTGAGCATACCTCTACTTCAACATCCTCATCGCAAAGGACACCAAATCATCTTCACGTCTACAGAGCCTATGGAGTTCAATTCCCATACACCACCATCGTCATCGAACTAACTTTACTTCTAGTTGTGACTATAGACCTGCTAGAAGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAACTATGCAATGCGTTGGGTGAGCGGACTGCAAATATTTTAAAACATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGATAAAATTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGTCCGGCCGATACCTCGAAGCCCTCACCTCCGCCGACGCAAACCGACTCGTCTTCAAACTCACCGATTCCCACTCGCTCGACGACGACGACCCCGACAGAGTGTACTCCGAGTTGCTCCGCCGCGTGGAGTCGTTCATATGCGAAGAAGCTGAGGATAATGGGAAGGACCAGGCCTATAGAGTCGTCGTCGTACTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTTTGGAGGGGCTGCCAAGGTGTCCGTTGCCACTGGAAGTGCCCTTATGTGATGAATGGGACGATTGGGCGCGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTATATAATTTATGCAAAGATATTGGTCATGAAGATGAAAGATTTGTTATTTGAAGGAAGTTTGTCTTGTGCATATGGAATTAGGAGCCTTTCATGGTGGCTTGCTAGGGTCACCTTTCTCCATCAGCGCATTCTCGATGAGCGGTCTTCATCTCTGTTCGACCTTTTGCATGTCTTTACAAGTGAAACTTTGAATCATTTTGGCACGTTGGAGAAATTAACAAGTTATTGGGGTAACGATTTGCGTAATGGCGAGGGATCGACACTCGTCTCAGTGATTCATCTGGAAGCTGGAATGATGGAATACATCTATGCACATGTTGATTCATGCAGGTTGCATTTTGAATCAGCTGAAGCAGCAGCTGGTGTTAAGCTTTCAGTTACAGGGGTTCTTGGCTTCCGTACTATACATCAGGTTGAACCAAAGGCACAAATGGTACTTTTAGCAAACACAACTTCATCAAAGAGTGGGGCTGTCTGTTCCTCTGAAAGCCCTGGCCCTCATAGATACGATTCTATTGGCAGAAATGATATATCTAAGCATCCATCTGAGTCCCATGAGGCTTCTGATATATTATTGACTCCAAGATTGGCAGTGATCCTGGCTAAATGCCTTCTAATTGAGAAGAGCACACGACATGATGACATGCAGAGATGGGAAATGGCTCCATACATCGAGGCAATTGATTCTCAGCTATTATCATATTTTATTGTTCAGGGCATCAACGATCCCTCTCCAGGAGTGGCAGACAGGATTCATTTCTGCTATGGGATTTATATCCCTACAGTTTCAGCCTTGCAGAAGGAATACGGTGAACTTTGTGTCTGCTGTGGTCTGATAGGAGAGGCAGTCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTAATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACACGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTGACAAAGCCCTAGAAGTTTCTAACGATAGGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCAAAACTTCTGTGGGAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAAGGATAAGGATATTGAGAAGGCACTAGATGGCTTTACACGGGCTGTTCAGCTTGATCCTGAAAATGGGGAGGCATGGAATAATATTGCCTGTTTGCATATGATAAAAGGGAAGAGTAAAGAAGCTTTCATTGCATTTAGAGAAGCACTGAAGTTCAAACGAAACAGCTATCAACTGTGGGAGAACTACAGCCATGTTGCTTTAGATGTTGGCAATGTTGCTCAGGCTCTAGAAGCTGCACGGAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTATTGGAAAGAATTATGACAGAGGTGGAAAGTATGGCTTCACCTACTAATTCAGCAATGACTGATGATGAAGATAACTTTCTCGTTTGTGGGACCACAAATGCAGCATCTGAGGTGGGACAATCTCGGGAAGCTGAGCACTTAGTAGAGTTCCTTGGAAAAGTTCTACAACAGATAGTTCGGAGTGGAAATGGAACAGATATTTGGGGCTTGTATGCTAGATGGCAAAAAATGAAAGGAGACCTCTCAATGTGCAGAGAAGCTTGGTTAAAGCAAGTCAGATCATACCAGGGATCTGATTTGTGGAAAGATAGAGATCGGTTTAAAAAGTTTGCGAAATCCTCCTTGGAACTCTGCAAGGTGTATATGGAGATTTCTTCATCTATTGGCAGCCGTGATGAACTTCTCTCAGCTGAAAGGCACCTAAGGAACATAATGAAACAGGCGGGGATGCCTTCTTCGAATTTTGATGTACATACAAAAAAAAGGAAGTCTGTTCCACCCTTGGTTGATTGGCAGGTTTACGCTGTTAGCCTTCTAATGACAGCAACACTGGTGGCCTCCTACTGGATCTTCATTGAGTTCATATCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

1017

Amino Acids

114.84

Weight (kDa)

5.76

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 127 - 187 5.7e-10 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 225, 1302, 2965
AccB1I GGYRCC 1 cut(s) 2877
AccB7I CCANNNNNTGG 1 cut(s) 1959
AccBSI CCGCTC 2 cut(s) 379, 1123
AccI GTMKAC 1 cut(s) 138
AccII CGCG 3 cut(s) 538, 729, 925
AclWI GGATC 8 cut(s) 588, 1246, 1573, 1703, 2222, 2433, 2758, 3035
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 3 cut(s) 1836, 2125, 2920
AcuI CTGAAG 3 cut(s) 542, 1353, 2342
AdeI CACNNNGTG 1 cut(s) 2063
AfaI GTAC 5 cut(s) 710, 798, 1384, 1419, 2931
AfiI CCNNNNNNNGG 6 cut(s) 730, 860, 1718, 1959, 2237, 3024
AflIII ACRYGT 1 cut(s) 1297
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 7 cut(s) 496, 774, 1474, 1581, 1717, 1952, 2745
AjuI GAANNNNNNNTTGG 4 cut(s) 2644, 2676, 2786, 2818
Alw21I GWGCWC 3 cut(s) 259, 1613, 2598
Alw26I GTCTC 3 cut(s) 1255, 2055, 2691
Alw44I GTGCAC 1 cut(s) 255
AlwI GGATC 8 cut(s) 588, 1246, 1573, 1703, 2222, 2433, 2758, 3035
AlwNI CAGNNNCTG 3 cut(s) 1343, 1907, 2567
Ama87I CYCGRG 2 cut(s) 2037, 2583
AoxI GGCC 5 cut(s) 610, 777, 1477, 2118, 3015
ApaLI GTGCAC 1 cut(s) 255
ApoI RAATTY 3 cut(s) 1836, 2125, 2920
Asp700I GAANNNNTTC 1 cut(s) 554
AspA2I CCTAGG 1 cut(s) 2155
AspLEI GCGC 2 cut(s) 925, 1110
AspS9I GGNCC 8 cut(s) 338, 503, 533, 606, 772, 851, 1478, 2550
AsuHPI GGTGA 7 cut(s) 386, 622, 658, 1084, 1805, 1985, 2490
AsuII TTCGAA 2 cut(s) 449, 2918
AvaI CYCGRG 2 cut(s) 2037, 2583
AvaII GGWCC 7 cut(s) 338, 503, 533, 606, 772, 851, 2550
AvrII CCTAGG 1 cut(s) 2155
AxyI CCTNAGG 1 cut(s) 2882
BaeGI GKGCMC 2 cut(s) 259, 897
BanI GGYRCC 1 cut(s) 2877
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbsI GAAGAC 2 cut(s) 649, 1119
Bbv12I GWGCWC 3 cut(s) 259, 1613, 2598
BbvCI CCTCAGC 1 cut(s) 756
BccI CCATC 9 cut(s) 182, 302, 1110, 1273, 1534, 1629, 2135, 2195, 2673
BceAI ACGGC 4 cut(s) 237, 794, 1943, 2835
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
BciVI GTATCC 1 cut(s) 2145
BclI TGATCA 1 cut(s) 1917
BcoDI GTCTC 3 cut(s) 1255, 2055, 2691
BfaI CTAG 8 cut(s) 200, 221, 1086, 2012, 2156, 2198, 2402, 2676
BfmI CTRYAG 6 cut(s) 139, 210, 781, 1764, 1879, 2359
BfuAI ACCTGC 3 cut(s) 225, 1302, 2965
BfuI GTATCC 1 cut(s) 2145
BglI GCCNNNNNGGC 1 cut(s) 2159
BlnI CCTAGG 1 cut(s) 2155
BlpI GCTNAGC 2 cut(s) 2043, 2592
Bme1390I CCNGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
Bme18I GGWCC 7 cut(s) 338, 503, 533, 606, 772, 851, 2550
BmeT110I CYCGRG 2 cut(s) 2037, 2583
BmgBI CACGTC 1 cut(s) 136
BmgT120I GGNCC 8 cut(s) 338, 503, 533, 606, 772, 851, 1478, 2550
BmiI GGNNCC 4 cut(s) 1067, 1647, 2551, 2879
BmrFI CCNGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
BmsI GCATC 7 cut(s) 487, 1531, 1710, 1981, 2440, 2573, 2898
BoxI GACNNNNGTC 1 cut(s) 1247
BpiI GAAGAC 2 cut(s) 649, 1119
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 2 cut(s) 519, 1701
Bpu10I CCTNAGC 2 cut(s) 756, 2394
Bpu1102I GCTNAGC 2 cut(s) 2043, 2592
Bpu14I TTCGAA 2 cut(s) 449, 2918
BsaBI GATNNNNATC 2 cut(s) 1757, 2772
BsaI GGTCTC 2 cut(s) 2055, 2691
BsaJI CCNNGG 9 cut(s) 536, 869, 1474, 1952, 2155, 2611, 2746, 2802, 2961
BsaWI WCCGGW 2 cut(s) 51, 848
BsaXI ACNNNNNCTCC 2 cut(s) 1815, 1845
Bsc4I CCNNNNNNNGG 6 cut(s) 730, 860, 1718, 1959, 2237, 3024
Bse1I ACTGG 4 cut(s) 410, 891, 3015, 3029
Bse21I CCTNAGG 1 cut(s) 2882
Bse3DI GCAATG 7 cut(s) 21, 370, 804, 2121, 2301, 2392, 2520
Bse8I GATNNNNATC 2 cut(s) 1757, 2772
BseBI CCWGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
BseDI CCNNGG 9 cut(s) 536, 869, 1474, 1952, 2155, 2611, 2746, 2802, 2961
BseGI GGATG 3 cut(s) 101, 1522, 2913
BseJI GATNNNNATC 2 cut(s) 1757, 2772
BseLI CCNNNNNNNGG 6 cut(s) 730, 860, 1718, 1959, 2237, 3024
BseMI GCAATG 7 cut(s) 21, 370, 804, 2121, 2301, 2392, 2520
BseNI ACTGG 4 cut(s) 410, 891, 3015, 3029
BseSI GKGCMC 2 cut(s) 259, 897
BseX3I CGGCCG 1 cut(s) 610
BsgI GTGCAG 2 cut(s) 2394, 2731
Bsh1236I CGCG 3 cut(s) 538, 729, 925
Bsh1285I CGRYCG 1 cut(s) 613
BshFI GGCC 5 cut(s) 612, 779, 1479, 2120, 3017
BshNI GGYRCC 1 cut(s) 2877
BsiEI CGRYCG 1 cut(s) 613
BsiHKAI GWGCWC 3 cut(s) 259, 1613, 2598
BsiHKCI CYCGRG 2 cut(s) 2037, 2583
BsiSI CCGG 3 cut(s) 52, 609, 849
BslFI GGGAC 4 cut(s) 926, 1519, 2563, 2589
BslI CCNNNNNNNGG 6 cut(s) 730, 860, 1718, 1959, 2237, 3024
BsmAI GTCTC 3 cut(s) 1255, 2055, 2691
BsmBI CGTCTC 1 cut(s) 1255
BsmFI GGGAC 4 cut(s) 926, 1519, 2563, 2589
BsmI GAATGC 1 cut(s) 1110
BsnI GGCC 5 cut(s) 612, 779, 1479, 2120, 3017
Bso31I GGTCTC 2 cut(s) 2055, 2691
BsoBI CYCGRG 2 cut(s) 2037, 2583
Bsp119I TTCGAA 2 cut(s) 449, 2918
Bsp1286I GDGCHC 4 cut(s) 259, 897, 1613, 2598
Bsp1407I TGTACA 1 cut(s) 2929
Bsp1720I GCTNAGC 2 cut(s) 2043, 2592
BspANI GGCC 5 cut(s) 612, 779, 1479, 2120, 3017
BspFNI CGCG 3 cut(s) 538, 729, 925
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 4 cut(s) 1067, 1647, 2551, 2879
BspMI ACCTGC 3 cut(s) 225, 1302, 2965
BspPI GGATC 8 cut(s) 588, 1246, 1573, 1703, 2222, 2433, 2758, 3035
BspQI GCTCTTC 1 cut(s) 1601
BspT104I TTCGAA 2 cut(s) 449, 2918
BspT107I GGYRCC 1 cut(s) 2877
BspTNI GGTCTC 2 cut(s) 2055, 2691
BsrBI CCGCTC 2 cut(s) 379, 1123
BsrDI GCAATG 7 cut(s) 21, 370, 804, 2121, 2301, 2392, 2520
BsrGI TGTACA 1 cut(s) 2929
BsrI ACTGG 4 cut(s) 410, 891, 3015, 3029
BssECI CCNNGG 9 cut(s) 536, 869, 1474, 1952, 2155, 2611, 2746, 2802, 2961
BssT1I CCWWGG 5 cut(s) 869, 2155, 2611, 2802, 2961
Bst2UI CCWGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
Bst4CI ACNGT 4 cut(s) 577, 1768, 1793, 2349
Bst6I CTCTTC 2 cut(s) 1601, 2279
BstAPI GCANNNNNTGC 1 cut(s) 2063
BstAUI TGTACA 1 cut(s) 2929
BstBI TTCGAA 2 cut(s) 449, 2918
BstC8I GCNNGC 5 cut(s) 35, 946, 1083, 1996, 2059
BstDSI CCRYGG 1 cut(s) 536
BstEII GGTNACC 1 cut(s) 1090
BstF5I GGATG 3 cut(s) 101, 1522, 2913
BstFNI CGCG 3 cut(s) 538, 729, 925
BstHHI GCGC 2 cut(s) 925, 1110
BstMAI GTCTC 3 cut(s) 1255, 2055, 2691
BstMCI CGRYCG 1 cut(s) 613
BstMWI GCNNNNNNNGC 8 cut(s) 815, 824, 931, 1337, 2063, 2159, 2303, 2405
BstNI CCWGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
BstNSI RCATGY 3 cut(s) 1154, 1301, 1630
BstPAI GACNNNNGTC 1 cut(s) 1247
BstPI GGTNACC 1 cut(s) 1090
BstSCI CCNGG 7 cut(s) 496, 774, 1474, 1581, 1717, 1952, 2745
BstSFI CTRYAG 6 cut(s) 139, 210, 781, 1764, 1879, 2359
BstSLI GKGCMC 2 cut(s) 259, 897
BstUI CGCG 3 cut(s) 538, 729, 925
BstV2I GAAGAC 2 cut(s) 649, 1119
BstX2I RGATCY 3 cut(s) 2425, 2750, 3027
BstYI RGATCY 3 cut(s) 2425, 2750, 3027
BstZI CGGCCG 1 cut(s) 610
Bsu36I CCTNAGG 1 cut(s) 2882
BsuI GTATCC 1 cut(s) 2145
BsuRI GGCC 5 cut(s) 612, 779, 1479, 2120, 3017
BtgI CCRYGG 1 cut(s) 536
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 3 cut(s) 101, 1522, 2913
BtsI GCAGTG 2 cut(s) 1581, 2068
BtsIMutI CAGTG 8 cut(s) 417, 582, 884, 1260, 1581, 2068, 2318, 3008
BveI ACCTGC 3 cut(s) 225, 1302, 2965
Cac8I GCNNGC 5 cut(s) 35, 946, 1083, 1996, 2059
CaiI CAGNNNCTG 3 cut(s) 1343, 1907, 2567
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 2 cut(s) 925, 1110
Cfr13I GGNCC 8 cut(s) 338, 503, 533, 606, 772, 851, 1478, 2550
Cfr42I CCGCGG 1 cut(s) 539
CseI GACGC 1 cut(s) 650
Csp6I GTAC 5 cut(s) 709, 797, 1383, 1418, 2930
CspCI CAANNNNNGTGG 2 cut(s) 2994, 3029
CviQI GTAC 5 cut(s) 709, 797, 1383, 1418, 2930
DraI TTTAAA 2 cut(s) 396, 2782
DraIII CACNNNGTG 1 cut(s) 2063
EaeI YGGCCR 1 cut(s) 610
EagI CGGCCG 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 1601, 2279
EarI CTCTTC 2 cut(s) 1601, 2279
EciI GGCGGA 2 cut(s) 625, 713
EclXI CGGCCG 1 cut(s) 610
Eco130I CCWWGG 5 cut(s) 869, 2155, 2611, 2802, 2961
Eco147I AGGCCT 1 cut(s) 779
Eco31I GGTCTC 2 cut(s) 2055, 2691
Eco47I GGWCC 7 cut(s) 338, 503, 533, 606, 772, 851, 2550
Eco52I CGGCCG 1 cut(s) 610
Eco57I CTGAAG 3 cut(s) 542, 1353, 2342
Eco81I CCTNAGG 1 cut(s) 2882
Eco88I CYCGRG 2 cut(s) 2037, 2583
Eco91I GGTNACC 1 cut(s) 1090
EcoO109I RGGNCCY 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 1090
EcoRI GAATTC 1 cut(s) 2125
EcoRII CCWGG 7 cut(s) 496, 774, 1474, 1581, 1717, 1952, 2745
EcoT14I CCWWGG 5 cut(s) 869, 2155, 2611, 2802, 2961
ErhI CCWWGG 5 cut(s) 869, 2155, 2611, 2802, 2961
Esp3I CGTCTC 1 cut(s) 1255
FalI AAGNNNNNCTT 6 cut(s) 1030, 1062, 1153, 1185, 2479, 2511
FaqI GGGAC 4 cut(s) 926, 1519, 2563, 2589
FauI CCCGC 1 cut(s) 2896
FauNDI CATATG 4 cut(s) 334, 743, 1054, 2271
FbaI TGATCA 1 cut(s) 1917
FblI GTMKAC 1 cut(s) 138
FokI GGATG 3 cut(s) 88, 1509, 2920
FspBI CTAG 8 cut(s) 200, 221, 1086, 2012, 2156, 2198, 2402, 2676
GlaI GCGC 2 cut(s) 924, 1109
GsuI CTGGAG 2 cut(s) 519, 1701
HaeIII GGCC 5 cut(s) 612, 779, 1479, 2120, 3017
HapII CCGG 3 cut(s) 52, 609, 849
HgaI GACGC 1 cut(s) 650
HhaI GCGC 2 cut(s) 925, 1110
Hin6I GCGC 2 cut(s) 923, 1108
HinP1I GCGC 2 cut(s) 923, 1108
HindIII AAGCTT 4 cut(s) 551, 1352, 2295, 2718
HpaII CCGG 3 cut(s) 52, 609, 849
HphI GGTGA 7 cut(s) 386, 622, 658, 1084, 1805, 1985, 2490
Hpy166II GTNNAC 6 cut(s) 139, 257, 302, 709, 1796, 2980
Hpy8I GTNNAC 6 cut(s) 139, 257, 302, 709, 1796, 2980
Hpy99I CGWCG 6 cut(s) 644, 689, 692, 695, 794, 797
HpyCH4III ACNGT 4 cut(s) 577, 1768, 1793, 2349
HpyCH4IV ACGT 3 cut(s) 135, 1187, 1977
HpyF10VI GCNNNNNNNGC 8 cut(s) 815, 824, 931, 1337, 2063, 2159, 2303, 2405
HpySE526I ACGT 3 cut(s) 135, 1187, 1977
HspAI GCGC 2 cut(s) 923, 1108
Ksp22I TGATCA 1 cut(s) 1917
KspI CCGCGG 1 cut(s) 539
LguI GCTCTTC 1 cut(s) 1601
LmnI GCTCC 3 cut(s) 726, 1065, 1651
LweI GCATC 7 cut(s) 487, 1531, 1710, 1981, 2440, 2573, 2898
MaeI CTAG 8 cut(s) 200, 221, 1086, 2012, 2156, 2198, 2402, 2676
MaeII ACGT 3 cut(s) 135, 1187, 1977
MaeIII GTNAC 6 cut(s) 205, 1090, 1214, 1360, 1973, 1978
MbiI CCGCTC 2 cut(s) 379, 1123
MfeI CAATTG 1 cut(s) 1662
MflI RGATCY 3 cut(s) 2425, 2750, 3027
MhlI GDGCHC 4 cut(s) 259, 897, 1613, 2598
MlyI GAGTC 6 cut(s) 645, 743, 795, 1541, 1555, 2117
MmeI TCCRAC 2 cut(s) 1170, 2403
MroXI GAANNNNTTC 1 cut(s) 554
MseI TTAA 6 cut(s) 395, 1199, 1350, 2171, 2726, 2781
MslI CAYNNNNRTG 2 cut(s) 486, 1013
MspA1I CMGCKG 5 cut(s) 538, 1331, 1343, 1907, 2870
MspI CCGG 3 cut(s) 52, 609, 849
MspR9I CCNGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
MunI CAATTG 1 cut(s) 1662
Mva1269I GAATGC 1 cut(s) 1110
MvaI CCWGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
MvnI CGCG 3 cut(s) 538, 729, 925
MwoI GCNNNNNNNGC 8 cut(s) 815, 824, 931, 1337, 2063, 2159, 2303, 2405
NdeI CATATG 4 cut(s) 334, 743, 1054, 2271
NlaIV GGNNCC 4 cut(s) 1067, 1647, 2551, 2879
NmuCI GTSAC 3 cut(s) 205, 1090, 1973
NspI RCATGY 3 cut(s) 1154, 1301, 1630
NspV TTCGAA 2 cut(s) 449, 2918
PagI TCATGA 1 cut(s) 1008
PceI AGGCCT 1 cut(s) 779
PciI ACATGT 1 cut(s) 1297
PciSI GCTCTTC 1 cut(s) 1601
PcsI WCGNNNNNNNCGW 2 cut(s) 690, 696
PctI GAATGC 1 cut(s) 1110
PdmI GAANNNNTTC 1 cut(s) 554
PfeI GAWTC 9 cut(s) 671, 928, 1174, 1258, 1304, 1325, 1493, 1667, 1735
PflMI CCANNNNNTGG 1 cut(s) 1959
PfoI TCCNGGA 1 cut(s) 1717
PleI GAGTC 6 cut(s) 645, 742, 794, 1540, 1555, 2116
PpsI GAGTC 6 cut(s) 645, 742, 794, 1540, 1555, 2116
PpuMI RGGWCCY 1 cut(s) 503
PscI ACATGT 1 cut(s) 1297
PshAI GACNNNNGTC 1 cut(s) 1247
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 7 cut(s) 496, 774, 1474, 1581, 1717, 1952, 2745
PspEI GGTNACC 1 cut(s) 1090
PspGI CCWGG 7 cut(s) 496, 774, 1474, 1581, 1717, 1952, 2745
PspN4I GGNNCC 4 cut(s) 1067, 1647, 2551, 2879
PspPI GGNCC 8 cut(s) 338, 503, 533, 606, 772, 851, 1478, 2550
PspPPI RGGWCCY 1 cut(s) 503
PsrI GAACNNNNNNTAC 2 cut(s) 177, 209
PstNI CAGNNNCTG 3 cut(s) 1343, 1907, 2567
PsuI RGATCY 3 cut(s) 2425, 2750, 3027
PvuII CAGCTG 4 cut(s) 1331, 1343, 1907, 2870
RsaI GTAC 5 cut(s) 710, 798, 1384, 1419, 2931
RsaNI GTAC 5 cut(s) 709, 797, 1383, 1418, 2930
RseI CAYNNNNRTG 2 cut(s) 486, 1013
SacII CCGCGG 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 1601
SaqAI TTAA 6 cut(s) 395, 1199, 1350, 2171, 2726, 2781
Sau96I GGNCC 8 cut(s) 338, 503, 533, 606, 772, 851, 1478, 2550
SchI GAGTC 6 cut(s) 645, 743, 795, 1541, 1555, 2117
ScrFI CCNGG 7 cut(s) 498, 776, 1476, 1583, 1719, 1954, 2747
SduI GDGCHC 4 cut(s) 259, 897, 1613, 2598
SfaNI GCATC 7 cut(s) 487, 1531, 1710, 1981, 2440, 2573, 2898
SfcI CTRYAG 6 cut(s) 139, 210, 781, 1764, 1879, 2359
Sfr303I CCGCGG 1 cut(s) 539
SfuI TTCGAA 2 cut(s) 449, 2918
SgrBI CCGCGG 1 cut(s) 539
SinI GGWCC 7 cut(s) 338, 503, 533, 606, 772, 851, 2550
SmiMI CAYNNNNRTG 2 cut(s) 486, 1013
SseBI AGGCCT 1 cut(s) 779
SspI AATATT 4 cut(s) 391, 976, 1872, 2257
SspMI CTAG 8 cut(s) 200, 221, 1086, 2012, 2156, 2198, 2402, 2676
StuI AGGCCT 1 cut(s) 779
StyD4I CCNGG 7 cut(s) 496, 774, 1474, 1581, 1717, 1952, 2745
StyI CCWWGG 5 cut(s) 869, 2155, 2611, 2802, 2961
TaaI ACNGT 4 cut(s) 577, 1768, 1793, 2349
TaiI ACGT 3 cut(s) 138, 1190, 1980
TatI WGTACW 2 cut(s) 708, 2929
TauI GCSGC 1 cut(s) 729
TfiI GAWTC 9 cut(s) 671, 928, 1174, 1258, 1304, 1325, 1493, 1667, 1735
Tru1I TTAA 6 cut(s) 395, 1199, 1350, 2171, 2726, 2781
Tru9I TTAA 6 cut(s) 395, 1199, 1350, 2171, 2726, 2781
TscAI CASTG 8 cut(s) 417, 582, 891, 1260, 1581, 2068, 2325, 3015
TseFI GTSAC 3 cut(s) 205, 1090, 1973
Tsp45I GTSAC 3 cut(s) 205, 1090, 1973
TspGWI ACGGA 3 cut(s) 867, 1370, 2428
TspRI CASTG 8 cut(s) 417, 582, 891, 1260, 1581, 2068, 2325, 3015
Van91I CCANNNNNTGG 1 cut(s) 1959
VneI GTGCAC 1 cut(s) 255
VpaK11BI GGWCC 7 cut(s) 338, 503, 533, 606, 772, 851, 2550
XapI RAATTY 3 cut(s) 1836, 2125, 2920
XbaI TCTAGA 1 cut(s) 2401
XceI RCATGY 3 cut(s) 1154, 1301, 1630
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmaJI CCTAGG 1 cut(s) 2155
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 554
XspI CTAG 8 cut(s) 200, 221, 1086, 2012, 2156, 2198, 2402, 2676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.