RchiOBHm_Chr1g0319751

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000877
Physical Location & Seq
Reverse (-)
7428738 .. 7434482
5745 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54997

Sequence Viewer

Length: 1026 bp
ATGACGGTAATAAATGTTGGTTCATATTATGAAAGTTTGAATCTGGATAGGAAGGAACTTTTGTGGTGGGTAGGACAATGGAGCTGTTACAAAAATATACGACGATGCTGTGATGTCCTACGTATTCGGTGGGAGTCGACACGTAGTCACACAAAGGAACGTGCATTGATGATGATGGAAACATTGGTTCAGGGTATCAAGGAGCCCTCTCCAGGAGTGGCAGACAGGATTCCTTTCTGCTGTGGGATTTATATCCCTACAGTTTCAGCCTTGCGGAAGGAATACGATGAACTTTGTGTCCGCTGTGGTCTGATAGGAGAGGCAATCAAAATTTTTGAGGACTTGGAATTATGGGATAATCTGATATTCTGCTATAGCCTATTGGAGAAAAAAGCAGCAGCTGTTGAACTGATCAAGACATGGCTTTCTGAAACACCTAATGACCCCAGGTTATGGTGTTCATTGGGTGACGTTACTAATGATGATGCCTGCTTTAAAAAAGCCCTAGAAGTTTCAAACGATAAGTCGGCTCGGGCTAAGCGGTCTCTTGCACGCAGTGCATACAACAGGGGGGAATATAGAACATCTAAACTTCTGTGGCAGTCTGCAATGGCCTTGAATTCTCTGTATCCTGATGGCTGGTTTGCCCTAGGGGCTGCTGCATTAAATGATGGGGATATTGAGAAGGCACTAGATGGCTTCACTCGGGCTGTTCAGCTCGATCCTGAAAATGGGGAGGCATGGAATAATATTGCTTGTTTGTATGTGGCTCTAGAAGCTACGCGTAAGGTGTTGGATCTTACTAATAATAAGAGAATTGATGCTGAGTTGTTGGAAAGAATTATGACAGAGGTGGAAAGCATGGCTTCACCTACTAATTCAGCAATGACTGATGATGGAGATAACTTTCCCGTCAGTGGGACCACAAATGCAGAATCTGATGTGGGAAAATCTCGGGAAGCTGAGCACTTAGTAGAGTTTCTTGGAAAAGTTCTACAACAGGTGCTTGAGGCCAGTTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

341

Amino Acids

38.38

Weight (kDa)

4.97

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_2 PF07719 211 - 244 4.8e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 453
AccI GTMKAC 1 cut(s) 137
AccII CGCG 1 cut(s) 784
AciI CCGC 3 cut(s) 274, 301, 541
AclWI GGATC 2 cut(s) 716, 804
AcsI RAATTY 2 cut(s) 330, 619
AdeI CACNNNGTG 1 cut(s) 557
AfiI CCNNNNNNNGG 5 cut(s) 212, 453, 731, 917, 918
AflIII ACRYGT 2 cut(s) 140, 782
AgsI TTSAA 4 cut(s) 40, 407, 516, 619
AhdI GACNNNNNGTC 1 cut(s) 144
AjnI CCWGG 2 cut(s) 211, 446
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 5 cut(s) 84, 401, 718, 779, 962
AluI AGCT 5 cut(s) 84, 401, 718, 779, 962
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 2 cut(s) 716, 804
AlwNI CAGNNNCTG 2 cut(s) 401, 938
Ama87I CYCGRG 3 cut(s) 531, 705, 954
AoxI GGCC 2 cut(s) 612, 1011
ApeKI GCWGC 4 cut(s) 395, 398, 656, 659
ApoI RAATTY 2 cut(s) 330, 619
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AspA2I CCTAGG 1 cut(s) 649
AspS9I GGNCC 1 cut(s) 921
AsuHPI GGTGA 2 cut(s) 479, 861
AvaI CYCGRG 3 cut(s) 531, 705, 954
AvaII GGWCC 1 cut(s) 921
AvrII CCTAGG 1 cut(s) 649
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 407, 410, 643, 646
BccI CCATC 5 cut(s) 169, 629, 665, 689, 890
BciT130I CCWGG 2 cut(s) 213, 448
BciVI GTATCC 1 cut(s) 639
BclI TGATCA 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 4 cut(s) 506, 650, 692, 773
BfmI CTRYAG 2 cut(s) 258, 373
BfuI GTATCC 1 cut(s) 639
BglI GCCNNNNNGGC 1 cut(s) 653
BisI GCNGC 4 cut(s) 396, 399, 657, 660
BlnI CCTAGG 1 cut(s) 649
BlpI GCTNAGC 2 cut(s) 537, 963
BlsI GCNGC 4 cut(s) 397, 400, 658, 661
Bme1390I CCNGG 2 cut(s) 213, 448
Bme18I GGWCC 1 cut(s) 921
BmeRI GACNNNNNGTC 1 cut(s) 144
BmeT110I CYCGRG 3 cut(s) 531, 705, 954
BmgT120I GGNCC 1 cut(s) 921
BmiI GGNNCC 2 cut(s) 204, 922
BmrFI CCNGG 2 cut(s) 213, 448
BmsI GCATC 3 cut(s) 95, 475, 811
BpmI CTGGAG 1 cut(s) 195
Bpu1102I GCTNAGC 2 cut(s) 537, 963
BsaAI YACGTR 2 cut(s) 122, 143
BsaBI GATNNNNATC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 549
BsaJI CCNNGG 2 cut(s) 446, 649
Bsc4I CCNNNNNNNGG 5 cut(s) 212, 453, 731, 917, 918
Bse1I ACTGG 1 cut(s) 1014
Bse3DI GCAATG 2 cut(s) 615, 891
Bse8I GATNNNNATC 1 cut(s) 251
BseBI CCWGG 2 cut(s) 213, 448
BseDI CCNNGG 2 cut(s) 446, 649
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 5 cut(s) 212, 453, 731, 917, 918
BseMI GCAATG 2 cut(s) 615, 891
BseMII CTCAG 2 cut(s) 816, 954
BseNI ACTGG 1 cut(s) 1014
BseXI GCAGC 4 cut(s) 407, 410, 643, 646
Bsh1236I CGCG 1 cut(s) 784
BshFI GGCC 2 cut(s) 614, 1013
BsiHKAI GWGCWC 1 cut(s) 969
BsiHKCI CYCGRG 3 cut(s) 531, 705, 954
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 5 cut(s) 212, 453, 731, 917, 918
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 934
BsnI GGCC 2 cut(s) 614, 1013
Bso31I GGTCTC 1 cut(s) 549
BsoBI CYCGRG 3 cut(s) 531, 705, 954
Bsp1286I GDGCHC 2 cut(s) 207, 969
Bsp143I GATC 3 cut(s) 411, 721, 796
Bsp1720I GCTNAGC 2 cut(s) 537, 963
BspACI CCGC 3 cut(s) 274, 301, 541
BspANI GGCC 2 cut(s) 614, 1013
BspCNI CTCAG 2 cut(s) 817, 955
BspFNI CGCG 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 204, 922
BspPI GGATC 2 cut(s) 716, 804
BspTNI GGTCTC 1 cut(s) 549
BsrDI GCAATG 2 cut(s) 615, 891
BsrI ACTGG 1 cut(s) 1014
BssECI CCNNGG 2 cut(s) 446, 649
BssMI GATC 3 cut(s) 411, 721, 796
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 2 cut(s) 213, 448
Bst4CI ACNGT 2 cut(s) 7, 262
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 2 cut(s) 122, 143
BstC8I GCNNGC 2 cut(s) 490, 553
BstDEI CTNAG 4 cut(s) 537, 825, 963, 970
BstFNI CGCG 1 cut(s) 784
BstKTI GATC 3 cut(s) 414, 724, 799
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 3 cut(s) 411, 721, 796
BstMWI GCNNNNNNNGC 3 cut(s) 557, 653, 776
BstNI CCWGG 2 cut(s) 213, 448
BstSCI CCNGG 2 cut(s) 211, 446
BstSFI CTRYAG 2 cut(s) 258, 373
BstSNI TACGTA 1 cut(s) 122
BstUI CGCG 1 cut(s) 784
BstV1I GCAGC 4 cut(s) 407, 410, 643, 646
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
BsuI GTATCC 1 cut(s) 639
BsuRI GGCC 2 cut(s) 614, 1013
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 2 cut(s) 562, 922
Cac8I GCNNGC 2 cut(s) 490, 553
CaiI CAGNNNCTG 2 cut(s) 401, 938
Cfr13I GGNCC 1 cut(s) 921
CviAII CATG 3 cut(s) 420, 741, 862
DdeI CTNAG 4 cut(s) 537, 825, 963, 970
DpnI GATC 3 cut(s) 413, 723, 798
DpnII GATC 3 cut(s) 411, 721, 796
DraI TTTAAA 1 cut(s) 496
DraIII CACNNNGTG 1 cut(s) 557
DriI GACNNNNNGTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 144
Eco105I TACGTA 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 921
Eco88I CYCGRG 3 cut(s) 531, 705, 954
EcoRI GAATTC 1 cut(s) 619
EcoRII CCWGG 2 cut(s) 211, 446
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 3 cut(s) 423, 744, 865
FalI AAGNNNNNCTT 2 cut(s) 850, 882
FaqI GGGAC 1 cut(s) 934
FatI CATG 3 cut(s) 419, 740, 861
FbaI TGATCA 1 cut(s) 411
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 396, 399, 657, 660
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 4 cut(s) 396, 399, 657, 660
FspBI CTAG 4 cut(s) 506, 650, 692, 773
GluI GCNGC 4 cut(s) 396, 399, 657, 660
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 614, 1013
Hin1II CATG 3 cut(s) 423, 744, 865
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 4 cut(s) 40, 134, 229, 935
HphI GGTGA 2 cut(s) 479, 861
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 4 cut(s) 312, 363, 430, 940
Hpy188III TCNNGA 6 cut(s) 44, 415, 632, 725, 773, 956
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 46, 271, 679
HpyCH4III ACNGT 2 cut(s) 7, 262
HpyCH4IV ACGT 4 cut(s) 121, 142, 160, 471
HpyCH4V TGCA 6 cut(s) 164, 551, 560, 608, 662, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 557, 653, 776
HpyF3I CTNAG 4 cut(s) 537, 825, 963, 970
HpySE526I ACGT 4 cut(s) 121, 142, 160, 471
Hsp92II CATG 3 cut(s) 423, 744, 865
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 3 cut(s) 411, 721, 796
LmnI GCTCC 2 cut(s) 81, 202
Lsp1109I GCAGC 4 cut(s) 407, 410, 643, 646
LweI GCATC 3 cut(s) 95, 475, 811
MaeI CTAG 4 cut(s) 506, 650, 692, 773
MaeII ACGT 4 cut(s) 121, 142, 160, 471
MaeIII GTNAC 4 cut(s) 86, 146, 467, 472
MalI GATC 3 cut(s) 413, 723, 798
MboI GATC 3 cut(s) 411, 721, 796
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 2 cut(s) 207, 969
MluCI AATT 6 cut(s) 330, 347, 619, 816, 840, 877
MluI ACGCGT 1 cut(s) 782
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 774, 813
MnlI CCTC 6 cut(s) 217, 313, 331, 730, 844, 1003
MseI TTAA 2 cut(s) 495, 665
MspA1I CMGCKG 2 cut(s) 303, 401
MspR9I CCNGG 2 cut(s) 213, 448
MvaI CCWGG 2 cut(s) 213, 448
MvnI CGCG 1 cut(s) 784
MwoI GCNNNNNNNGC 3 cut(s) 557, 653, 776
NdeII GATC 3 cut(s) 411, 721, 796
NlaIII CATG 3 cut(s) 423, 744, 865
NlaIV GGNNCC 2 cut(s) 204, 922
NmuCI GTSAC 2 cut(s) 146, 467
PfeI GAWTC 3 cut(s) 40, 229, 935
PflMI CCANNNNNTGG 1 cut(s) 453
PfoI TCCNGGA 1 cut(s) 211
PkrI GCNGC 4 cut(s) 397, 400, 658, 661
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 2 cut(s) 122, 143
Psp6I CCWGG 2 cut(s) 211, 446
PspGI CCWGG 2 cut(s) 211, 446
PspN4I GGNNCC 2 cut(s) 204, 922
PspPI GGNCC 1 cut(s) 921
PstNI CAGNNNCTG 2 cut(s) 401, 938
PsuI RGATCY 1 cut(s) 796
PvuII CAGCTG 1 cut(s) 401
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 495, 665
SatI GCNGC 4 cut(s) 396, 399, 657, 660
Sau3AI GATC 3 cut(s) 411, 721, 796
Sau96I GGNCC 1 cut(s) 921
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 2 cut(s) 213, 448
SduI GDGCHC 2 cut(s) 207, 969
SfaNI GCATC 3 cut(s) 95, 475, 811
SfcI CTRYAG 2 cut(s) 258, 373
SinI GGWCC 1 cut(s) 921
SmlI CTYRAG 1 cut(s) 1007
SmoI CTYRAG 1 cut(s) 1007
SnaBI TACGTA 1 cut(s) 122
Sse9I AATT 6 cut(s) 330, 347, 619, 816, 840, 877
SsiI CCGC 3 cut(s) 274, 301, 541
SspI AATATT 1 cut(s) 751
SspMI CTAG 4 cut(s) 506, 650, 692, 773
StyD4I CCNGG 2 cut(s) 211, 446
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 2 cut(s) 7, 262
TaiI ACGT 4 cut(s) 124, 145, 163, 474
TaqI TCGA 2 cut(s) 137, 720
TasI AATT 6 cut(s) 330, 347, 619, 816, 840, 877
TfiI GAWTC 3 cut(s) 40, 229, 935
Tru1I TTAA 2 cut(s) 495, 665
Tru9I TTAA 2 cut(s) 495, 665
TscAI CASTG 2 cut(s) 562, 922
TseFI GTSAC 2 cut(s) 146, 467
TseI GCWGC 4 cut(s) 395, 398, 656, 659
Tsp45I GTSAC 2 cut(s) 146, 467
TspDTI ATGAA 4 cut(s) 12, 45, 303, 450
TspRI CASTG 2 cut(s) 562, 922
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 921
XapI RAATTY 2 cut(s) 330, 619
XbaI TCTAGA 1 cut(s) 772
XmaJI CCTAGG 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 4 cut(s) 506, 650, 692, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.