RchiOBHm_Chr1g0346651

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000821
Physical Location & Seq
Forward (+)
39111278 .. 39111595
318 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGCCTTGGAGAAGTTTTTGTATCCAGAGTCTGCTTATATTTGCAAATATTTTTTTCTGATGGATAAACTTGTGGACAATGTGGAGGATGTGAACTTGCTGATTGAGACTGGAGTGATTGTTAACAAGTTAGCAGGCTGCAATGAATTGGCAGTGAACCTGATTAATACACTTTGTCTGGAGATTATGGATGATAGTTGCTGCTATGGTGGTGTCTGTAACCAGCTCAATAAGCACTACGGGAACAGTTTTTGGAAACGTCATGTGGCTATCCTGAAACGAGTTTACTTCAAGGATCTTTGGAGTTTGGACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

105

Amino Acids

12.13

Weight (kDa)

5.23

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 102 1.9e-23 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 303
AgsI TTSAA 1 cut(s) 292
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 303
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 138, 201
AseI ATTAAT 1 cut(s) 165
BbvI GCAGC 2 cut(s) 125, 188
BccI CCATC 1 cut(s) 55
BciVI GTATCC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 316
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 2 cut(s) 139, 202
BlsI GCNGC 2 cut(s) 140, 203
BpmI CTGGAG 2 cut(s) 132, 200
BsaJI CCNNGG 1 cut(s) 6
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 94, 196
BseMI GCAATG 1 cut(s) 148
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 125, 188
BshFI GGCC 1 cut(s) 5
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 295
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 136
BstF5I GGATG 2 cut(s) 94, 196
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 125, 188
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 94, 196
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 32
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 5, 138, 226, 269
CviKI_1 RGCY 4 cut(s) 5, 138, 226, 269
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 266
FaiI YATR 4 cut(s) 39, 188, 207, 264
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 139, 202
FokI GGATG 2 cut(s) 101, 203
Fsp4HI GCNGC 2 cut(s) 139, 202
FspBI CTAG 1 cut(s) 316
GluI GCNGC 2 cut(s) 139, 202
GsuI CTGGAG 2 cut(s) 132, 200
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 266
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 1 cut(s) 29
HpaI GTTAAC 1 cut(s) 124
Hpy166II GTNNAC 5 cut(s) 76, 94, 124, 157, 286
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 3 cut(s) 26, 179, 274
Hpy8I GTNNAC 5 cut(s) 76, 94, 124, 157, 286
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 45, 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 1 cut(s) 266
KspAI GTTAAC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 7 cut(s) 39, 96, 120, 164, 173, 236, 287
Lsp1109I GCAGC 2 cut(s) 125, 188
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MflI RGATCY 1 cut(s) 295
MluCI AATT 1 cut(s) 146
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 1 cut(s) 79
MseI TTAA 2 cut(s) 123, 165
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 266
PkrI GCNGC 2 cut(s) 140, 203
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 295
SaqAI TTAA 2 cut(s) 123, 165
SatI GCNGC 2 cut(s) 139, 202
Sau3AI GATC 1 cut(s) 295
SchI GAGTC 1 cut(s) 38
SetI ASST 3 cut(s) 162, 228, 262
Sse9I AATT 1 cut(s) 146
SspI AATATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 262
TasI AATT 1 cut(s) 146
Tru1I TTAA 2 cut(s) 123, 165
Tru9I TTAA 2 cut(s) 123, 165
TscAI CASTG 1 cut(s) 159
TseI GCWGC 2 cut(s) 138, 201
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 159
VspI ATTAAT 1 cut(s) 165
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.