RchiOBHm_Chr1g0375391

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
62797122 .. 62797405
284 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGAATGGTGAAGAGGGGAAAATGGAAGGGGAGTGTTCACTTGAGGATGAGAAGAAGGGAAAGGATATTGGTGTTAAAGACGCTACTTCGCATTTGGTTGGCTTGAATTGGGAGGTATTGGTGGTGGATGAGCCGATTGTCAATGCGTATTGCTTGCCGGGTGGGAAGATTGTGGTCTTCACAGGGTTGATCCTTATACATGTGTCTTATCTCTATTTTGGGTGCAGGTTCGCAAAATGCAGCTGGTATCAGCATACAGGTCTTTGA

Protein Analysis

88

Amino Acids

9.75

Weight (kDa)

5.21

Isoelectric Point (pI)

18.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
AlwI GGATC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 216
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 52, 133
BseXI GCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 158
Bsp143I GATC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 1 cut(s) 184
BssMI GATC 1 cut(s) 189
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 155
BstF5I GGATG 2 cut(s) 52, 133
BstKTI GATC 1 cut(s) 192
BstMBI GATC 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 52, 133
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 155
CseI GACGC 1 cut(s) 89
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 102, 133, 243
CviKI_1 RGCY 3 cut(s) 102, 133, 243
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
FaeI CATG 1 cut(s) 203
FaiI YATR 3 cut(s) 197, 201, 255
FatI CATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 2 cut(s) 59, 140
Fsp4HI GCNGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 241
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 203
HpaII CCGG 1 cut(s) 158
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 20, 49
HpyCH4V TGCA 2 cut(s) 225, 240
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 5 cut(s) 168, 171, 211, 229, 243
Lsp1109I GCAGC 1 cut(s) 252
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 4 cut(s) 23, 64, 169, 178
MluCI AATT 1 cut(s) 106
MnlI CCTC 3 cut(s) 7, 37, 106
MseI TTAA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 159
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 203
NspI RCATGY 1 cut(s) 203
PciI ACATGT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 242
PscI ACATGT 1 cut(s) 199
PvuII CAGCTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 159
SetI ASST 4 cut(s) 117, 230, 245, 262
SgeI CNNG 9 cut(s) 53, 115, 166, 170, 171, 195, 212, 238, 256
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 157
TasI AATT 1 cut(s) 106
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.