RchiOBHm_Chr0c17g0499941

synthase

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000979
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGGCTTCTCATAAGTTTGAGCAAAAGAGAGGACATGTCACCTCAGATGTGGAATGCTACATGAAAGAATATGGTGTCACAGAAGAAGAAGCAAAAGTCGCACTGACTAAACAAGTGGATAATGCTTGGAAGGACATAAATAAAGAATTGTTGAGGATTAACACTATTCCAAGGCCCCTCCTATTCCGAGTTCTCAATCTCACACGGGTGATTGAAGTTCTGTACAAGAATGAAGATGGCTATACTCATCCAAGTGGTGTGGTCAAGGGTTTTGTGGCTTCCGTACTGATCAGACTGTACCAATATAAGTCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 map00909
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

105

Amino Acids

12.19

Weight (kDa)

9.21

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth_C PF03936 1 - 45 5.2e-13 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 1 - 45 3.1e-11 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 224, 285, 299
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 215
AleI CACNNNNGTG 1 cut(s) 206
AoxI GGCC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 31, 220
BccI CCATC 1 cut(s) 230
BclI TGATCA 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 288
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 43, 312
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 38
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 3 cut(s) 223, 284, 298
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 2 cut(s) 35, 61
CviJI RGCY 4 cut(s) 5, 175, 240, 278
CviKI_1 RGCY 4 cut(s) 5, 175, 240, 278
CviQI GTAC 3 cut(s) 223, 284, 298
DdeI CTNAG 2 cut(s) 43, 312
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 38, 64
FaiI YATR 7 cut(s) 12, 36, 62, 72, 137, 243, 306
FatI CATG 2 cut(s) 34, 60
FbaI TGATCA 1 cut(s) 288
FokI GGATG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 2 cut(s) 38, 64
HphI GGTGA 2 cut(s) 31, 220
Hpy188I TCNGA 3 cut(s) 46, 188, 293
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 43, 312
Hsp92II CATG 2 cut(s) 38, 64
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 37, 76
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 3 cut(s) 95, 98, 245
MluCI AATT 1 cut(s) 146
MnlI CCTC 4 cut(s) 23, 52, 147, 188
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 2 cut(s) 206, 252
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 1 cut(s) 288
NlaIII CATG 2 cut(s) 38, 64
NlaIV GGNNCC 1 cut(s) 176
NmuCI GTSAC 2 cut(s) 37, 76
NspI RCATGY 1 cut(s) 38
OliI CACNNNNGTG 1 cut(s) 206
PciI ACATGT 1 cut(s) 34
PctI GAATGC 1 cut(s) 59
PscI ACATGT 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 174
RsaI GTAC 3 cut(s) 224, 285, 299
RsaNI GTAC 3 cut(s) 223, 284, 298
RseI CAYNNNNRTG 2 cut(s) 206, 252
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 174
SetI ASST 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 206, 252
Sse9I AATT 1 cut(s) 146
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 297
TasI AATT 1 cut(s) 146
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 2 cut(s) 37, 76
Tsp45I GTSAC 2 cut(s) 37, 76
TspDTI ATGAA 2 cut(s) 77, 246
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 1 cut(s) 108
XceI RCATGY 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.