Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Forward (+)

1796778 .. 1798254

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G05920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGTTCGCGTGATAAACCCAAGACTTTCGCAGAAGTAAGAGAAGAGATATGTAAGAGAAGAGAAGAGATGATTTCGCGTGATAACCAAAAAAAAACCAAGACTGTCGCACAAGTAAGAGAAGAGAAAGGTAAGAGAAGGGAAGAGATGATTTCGCGTTATAACCAAAAAAAGGCCAAGACTGTCGCACAAGTAAAAGAAGGGAAAGGTAAGAGAAGAGAAGAGATGATTTCGCGTGATAACCGAACAAAACCCAAGACTGTCGCACAAGTAAGAGATGCGAAAAGGAAGAGAACCTTCGATCACGTCCCCAGAGGAACAAGGGAACCTCACGCATACCTTCGCAATGATCCAGCGCCTCAAGTTGCTTCTGTCCCCAAGAGTGTCCCAGAAGAGAAAGATGTGATATTGGATAGAATCTTGAGTAACGTCCCCAGAAGAAAAAAGACTACTTCTTACGAATTCGTCCCACCAAAACACCCACAAGAACCGCAATGGCTTCTCCAGGTTATGAGTCGCATGAACGGCGCTGGTGATCCGAAGCTAATCATAGAGAAGAATCTGGACTCGAACGATGTTGATCCACGTCAAAACCGACTCTCAATCCCTATCAATACCGTAATCCAAAACGATTTCTTGACGCTTGACGAGTCAAGGTTGATTGATGAAGACGAAATCACTAACGAAGGGAATATGGGTGTTGCAGCGTTTCTTGTTGATCAGCGAACTAAGAAGTGGAACATGGGTTTTAAACAATGGTTTATGACGACTGATTCAGGGAGCAGTTACTGGAGTTTTGTGTTGCGAGGTGAATGGAGCAACGTCGTTGAGACTAATGGACTGAAAGAAGGCGACAAAATCAGCCTTTGGTCTTTCAGGTCCAACGATATCCTCTGTTTTGCCCTTGTTCCTCCAACGAGCTCTGTTGTTGAGTCTTTAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

315

Amino Acids

36.48

Weight (kDa)

9.62

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	162 - 277	4.4e-43	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AccII	CGCG	4 cut(s)	10, 79, 157, 235
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	3 cut(s)	344, 530, 575
AcsI	RAATTY	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	172
AjiI	CACGTC	2 cut(s)	307, 587
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	2 cut(s)	544, 921
AluI	AGCT	2 cut(s)	544, 921
Alw21I	GWGCWC	1 cut(s)	923
Alw26I	GTCTC	1 cut(s)	824
AlwI	GGATC	3 cut(s)	344, 530, 575
AlwNI	CAGNNNCTG	1 cut(s)	789
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	358, 530
AspS9I	GGNCC	1 cut(s)	879
AsuHPI	GGTGA	2 cut(s)	545, 821
AvaII	GGWCC	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	923
BbsI	GAAGAC	1 cut(s)	675
Bbv12I	GWGCWC	1 cut(s)	923
BbvI	GCAGC	1 cut(s)	716
BceAI	ACGGC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	506
BclI	TGATCA	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	824
BfoI	RGCGCY	2 cut(s)	359, 531
BisI	GCNGC	1 cut(s)	705
BlsI	GCNGC	1 cut(s)	706
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	879
BmgBI	CACGTC	2 cut(s)	307, 587
BmgT120I	GGNCC	1 cut(s)	879
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	675
BpmI	CTGGAG	2 cut(s)	488, 811
BpuEI	CTTGAG	2 cut(s)	345, 442
BsaBI	GATNNNNATC	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	794
Bse3DI	GCAATG	2 cut(s)	352, 500
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	506
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	2 cut(s)	352, 500
BseNI	ACTGG	1 cut(s)	794
BseXI	GCAGC	1 cut(s)	716
Bsh1236I	CGCG	4 cut(s)	10, 79, 157, 235
BshFI	GGCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	923
BslFI	GGGAC	5 cut(s)	293, 359, 371, 416, 452
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	824
BsmFI	GGGAC	5 cut(s)	293, 359, 371, 416, 452
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	923
Bsp143I	GATC	5 cut(s)	301, 349, 535, 580, 718
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	1 cut(s)	176
BspFNI	CGCG	4 cut(s)	10, 79, 157, 235
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	3 cut(s)	344, 530, 575
BsrDI	GCAATG	2 cut(s)	352, 500
BsrI	ACTGG	1 cut(s)	794
BssMI	GATC	5 cut(s)	301, 349, 535, 580, 718
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	4 cut(s)	106, 184, 262, 619
Bst6I	CTCTTC	9 cut(s)	39, 55, 60, 117, 138, 211, 216, 284, 387
BstDEI	CTNAG	1 cut(s)	729
BstFNI	CGCG	4 cut(s)	10, 79, 157, 235
BstH2I	RGCGCY	2 cut(s)	359, 531
BstHHI	GCGC	2 cut(s)	358, 530
BstKTI	GATC	5 cut(s)	304, 352, 538, 583, 721
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	5 cut(s)	301, 349, 535, 580, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	525
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BstUI	CGCG	4 cut(s)	10, 79, 157, 235
BstV1I	GCAGC	1 cut(s)	716
BstV2I	GAAGAC	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	176
BtrI	CACGTC	2 cut(s)	307, 587
CaiI	CAGNNNCTG	1 cut(s)	789
CfoI	GCGC	2 cut(s)	358, 530
Cfr13I	GGNCC	1 cut(s)	879
CseI	GACGC	1 cut(s)	649
CviAII	CATG	2 cut(s)	520, 742
CviJI	RGCY	5 cut(s)	176, 499, 544, 864, 921
CviKI_1	RGCY	5 cut(s)	176, 499, 544, 864, 921
DdeI	CTNAG	1 cut(s)	729
DpnI	GATC	5 cut(s)	303, 351, 537, 582, 720
DpnII	GATC	5 cut(s)	301, 349, 535, 580, 718
DraI	TTTAAA	1 cut(s)	751
Eam1104I	CTCTTC	9 cut(s)	39, 55, 60, 117, 138, 211, 216, 284, 387
EarI	CTCTTC	9 cut(s)	39, 55, 60, 117, 138, 211, 216, 284, 387
Ecl136II	GAGCTC	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	923
Eco32I	GATATC	1 cut(s)	889
Eco47I	GGWCC	1 cut(s)	879
Eco53kI	GAGCTC	1 cut(s)	921
EcoICRI	GAGCTC	1 cut(s)	921
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	504
EcoRV	GATATC	1 cut(s)	889
EcoT38I	GRGCYC	1 cut(s)	923
FaeI	CATG	2 cut(s)	523, 745
FaiI	YATR	9 cut(s)	52, 162, 337, 512, 521, 551, 695, 743, 764
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	5 cut(s)	293, 359, 371, 416, 452
FatI	CATG	2 cut(s)	519, 741
FbaI	TGATCA	1 cut(s)	718
Fnu4HI	GCNGC	1 cut(s)	705
FriOI	GRGCYC	1 cut(s)	923
Fsp4HI	GCNGC	1 cut(s)	705
GlaI	GCGC	2 cut(s)	357, 529
GluI	GCNGC	1 cut(s)	705
GsuI	CTGGAG	2 cut(s)	488, 811
HaeII	RGCGCY	2 cut(s)	359, 531
HaeIII	GGCC	1 cut(s)	176
HgaI	GACGC	1 cut(s)	649
HhaI	GCGC	2 cut(s)	358, 530
Hin1II	CATG	2 cut(s)	523, 745
Hin6I	GCGC	2 cut(s)	356, 528
HinP1I	GCGC	2 cut(s)	356, 528
HinfI	GANTC	8 cut(s)	417, 514, 559, 566, 597, 650, 773, 932
HphI	GGTGA	2 cut(s)	545, 821
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	3 cut(s)	421, 563, 637
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	6 cut(s)	132, 194, 307, 350, 680, 842
HpyCH4III	ACNGT	4 cut(s)	106, 184, 262, 619
HpyCH4IV	ACGT	4 cut(s)	306, 429, 586, 822
HpyCH4V	TGCA	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	525
HpyF3I	CTNAG	1 cut(s)	729
HpySE526I	ACGT	4 cut(s)	306, 429, 586, 822
Hsp92II	CATG	2 cut(s)	523, 745
HspAI	GCGC	2 cut(s)	356, 528
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	5 cut(s)	301, 349, 535, 580, 718
LmnI	GCTCC	2 cut(s)	780, 816
Lsp1109I	GCAGC	1 cut(s)	716
LweI	GCATC	1 cut(s)	268
MaeII	ACGT	4 cut(s)	306, 429, 586, 822
MaeIII	GTNAC	2 cut(s)	425, 785
MalI	GATC	5 cut(s)	303, 351, 537, 582, 720
MboI	GATC	5 cut(s)	301, 349, 535, 580, 718
MhlI	GDGCHC	1 cut(s)	923
MluCI	AATT	1 cut(s)	461
MlyI	GAGTC	5 cut(s)	523, 560, 591, 659, 941
MmeI	TCCRAC	2 cut(s)	906, 938
MnlI	CCTC	6 cut(s)	308, 339, 369, 800, 902, 921
MseI	TTAA	1 cut(s)	750
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	4 cut(s)	10, 79, 157, 235
MwoI	GCNNNNNNNGC	1 cut(s)	525
NdeII	GATC	5 cut(s)	301, 349, 535, 580, 718
NlaIII	CATG	2 cut(s)	523, 745
NlaIV	GGNNCC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PfeI	GAWTC	3 cut(s)	417, 559, 773
PkrI	GCNGC	1 cut(s)	706
PleI	GAGTC	5 cut(s)	522, 560, 591, 658, 940
PpsI	GAGTC	5 cut(s)	522, 560, 591, 658, 940
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	923
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	879
PstNI	CAGNNNCTG	1 cut(s)	789
SacI	GAGCTC	1 cut(s)	923
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	1 cut(s)	705
Sau3AI	GATC	5 cut(s)	301, 349, 535, 580, 718
Sau96I	GGNCC	1 cut(s)	879
SchI	GAGTC	5 cut(s)	523, 560, 591, 659, 941
ScrFI	CCNGG	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	923
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	879
SmlI	CTYRAG	2 cut(s)	360, 421
SmoI	CTYRAG	2 cut(s)	360, 421
Sse9I	AATT	1 cut(s)	461
SsiI	CCGC	1 cut(s)	491
SstI	GAGCTC	1 cut(s)	923
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	4 cut(s)	106, 184, 262, 619
TaiI	ACGT	4 cut(s)	309, 432, 589, 825
TaqI	TCGA	2 cut(s)	300, 569
TasI	AATT	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	417, 559, 773
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TseI	GCWGC	1 cut(s)	704
TspDTI	ATGAA	2 cut(s)	536, 681
VpaK11BI	GGWCC	1 cut(s)	879
XapI	RAATTY	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.