Rw1G038740

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000766
Physical Location & Seq
Forward (+)
66280907 .. 66282241
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038740.1

Sequence Viewer

Length: 1335 bp
ATGGCGCCGCTAGTGAGTATGGAAGACTTCATAGAAAAACAACTTCGACCTGGTTCAACCTTGAATATTTTGGGTCAGGTTGCTTGTGTTGCACGGGAGAAACTCAAGCAAAGGAGGAAGGAGAAAAGTATTAAAGTCAAAACTCAGATGGGTAGTAGTAGTACCCCCAAGGTTAAAGAGCCCAATTATGTAGCTGAAACATATTCCAAAGAGACGGATGCTGATATGAACAAAAGAAAGAGTCGAGAGGACGATGTTGATCATCATGACAAGGGTTTTCAATTGAAACAACGGAAGACAATTCTTTTGCACGAGGAATTTGGTACTACCTCCAAGACTAAAGAACCAAATTCATCAATGGGTAATAAAGAATTTGAGGAGGATGCTTTATACTCAGTTGGCACAATAAGGAGAGAAAGTTCTTTCCTTAGGACAAATTATGTAACGAGTTCTGTGTTTGGCTCCAAAACTGGTCCGGCTAGCAAACACTCTGATTCAGGGTTTCAGGAAAAAAATGGGTTGACAAAGAAGAAGAGTATTGATGGTGGTGAGGATGGTAAAGCTTGGAGTTTGAAGCCCAAGCCGAAGAATATGAAGATTAAGAAGGAAAAGGGGTTGAGATTCAAGAGGCCTAAGGAGCAGATGAGAGCACCCAGATATAGTACTGATCCTAATGACTTGCCTGAAGACTTGAAAAGGAAGATTGAAACTTTGGAAGGTATTGAAAGTTTTGAAAAGGCTAAGATGACTATGGTGATAGAGAAGCATCTGTTCGAGACTGATCTGACTGATAGCGCAAGCCGATTGTCAATGCCTCTGAAACAAATCAAACCGGAGAGTTTCTTGGACGAGGATGAGATAAAGTTTCTTGCATCTCAACAAGACTGGCCGGTTTCGCTTATAAGTCCCAAACTTAAGGACGAAAATCTAACTTTCAGGCAATGGAACATGAATAAGAATAACGGCAACGTTAGCTCAAGTTATGTGTTGAAAACAGGTTGGAACGAACTTCACAAGAAAAACGGTCTCCAAGTAAATGATGTAATCCAAGTTTGGTCATTTCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTCTTGTTGAGAAGGCAACAGAGGGCGGTTTAAGACCATCACTAGATGGGTGTAGTCTACCTTCTTCGCGATCAACAACGCCGCCTAGCAACAATAATGGTGATGGTGAAAATAGTAGTTGTAATATTGGCCAAGGAACAGAAATAAAAGAAGAAGAGATGATAAGAGGAGATGAAAATCGTGAGGTTAATGATGAATGCAATAGCAGGAGTGGAAGAATTTCAACGTACACCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF313

Protein Analysis

444

Amino Acids

50.2

Weight (kDa)

8.9

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 248 - 337 2.3e-15 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 1153
AccII CGCG 1 cut(s) 1165
AciI CCGC 3 cut(s) 8, 1122, 1178
AclI AACGTT 1 cut(s) 969
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 2 cut(s) 887, 1225
AcsI RAATTY 4 cut(s) 317, 349, 371, 1314
AcuI CTGAAG 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 163, 325, 664, 1325
AflII CTTAAG 1 cut(s) 914
AjnI CCWGG 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 403, 435
AluBI AGCT 3 cut(s) 194, 563, 975
AluI AGCT 3 cut(s) 194, 563, 975
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 3 cut(s) 206, 770, 1031
AlwI GGATC 1 cut(s) 662
AoxI GGCC 3 cut(s) 629, 887, 1225
ApoI RAATTY 4 cut(s) 317, 349, 371, 1314
ArsI GACNNNNNNTTYG 2 cut(s) 289, 321
Asp700I GAANNNNTTC 1 cut(s) 1315
AspLEI GCGC 2 cut(s) 7, 797
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 4 cut(s) 560, 766, 1208, 1214
AsuNHI GCTAGC 1 cut(s) 479
AvaII GGWCC 1 cut(s) 473
AxyI CCTNAGG 2 cut(s) 428, 633
BalI TGGCCA 1 cut(s) 1227
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 1141, 1173
BauI CACGAG 1 cut(s) 311
BbsI GAAGAC 3 cut(s) 30, 302, 693
Bbv12I GWGCWC 1 cut(s) 652
BccI CCATC 6 cut(s) 142, 536, 548, 1136, 1141, 1193
BceAI ACGGC 1 cut(s) 979
BciT130I CCWGG 1 cut(s) 51
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 3 cut(s) 206, 770, 1031
BfaI CTAG 4 cut(s) 11, 480, 1139, 1182
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 914
BisI GCNGC 2 cut(s) 8, 1178
BlsI GCNGC 2 cut(s) 9, 1179
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 2 cut(s) 6, 463
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 4 cut(s) 208, 373, 775, 881
BmtI GCTAGC 1 cut(s) 483
BpiI GAAGAC 3 cut(s) 30, 302, 693
BpuEI CTTGAG 2 cut(s) 89, 961
BsaBI GATNNNNATC 2 cut(s) 258, 1272
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 2 cut(s) 168, 1228
BsaWI WCCGGW 1 cut(s) 832
BsaXI ACNNNNNCTCC 2 cut(s) 403, 433
Bse118I RCCGGY 1 cut(s) 889
Bse1I ACTGG 2 cut(s) 475, 890
Bse21I CCTNAGG 2 cut(s) 428, 633
Bse3DI GCAATG 1 cut(s) 947
Bse8I GATNNNNATC 2 cut(s) 258, 1272
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 2 cut(s) 168, 1228
BseGI GGATG 4 cut(s) 223, 388, 559, 859
BseJI GATNNNNATC 2 cut(s) 258, 1272
BseMI GCAATG 1 cut(s) 947
BseMII CTCAG 2 cut(s) 158, 408
BseNI ACTGG 2 cut(s) 475, 890
BseRI GAGGAG 2 cut(s) 392, 1278
Bsh1236I CGCG 1 cut(s) 1165
BshFI GGCC 3 cut(s) 631, 889, 1227
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 652
BsiSI CCGG 3 cut(s) 476, 833, 890
BslFI GGGAC 1 cut(s) 891
BsmAI GTCTC 3 cut(s) 206, 770, 1031
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 891
BsmI GAATGC 1 cut(s) 1298
BsnI GGCC 3 cut(s) 631, 889, 1227
Bso31I GGTCTC 1 cut(s) 1031
Bsp1286I GDGCHC 2 cut(s) 183, 652
Bsp143I GATC 4 cut(s) 259, 667, 781, 1166
Bsp68I TCGCGA 1 cut(s) 1165
BspACI CCGC 3 cut(s) 8, 1122, 1178
BspANI GGCC 3 cut(s) 631, 889, 1227
BspCNI CTCAG 2 cut(s) 157, 407
BspFNI CGCG 1 cut(s) 1165
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 6, 463
BspOI GCTAGC 1 cut(s) 483
BspPI GGATC 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 914
BspTNI GGTCTC 1 cut(s) 1031
BsrDI GCAATG 1 cut(s) 947
BsrFI RCCGGY 1 cut(s) 889
BsrI ACTGG 2 cut(s) 475, 890
BssAI RCCGGY 1 cut(s) 889
BssECI CCNNGG 2 cut(s) 168, 1228
BssMI GATC 4 cut(s) 259, 667, 781, 1166
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 311
BssT1I CCWWGG 2 cut(s) 168, 1228
Bst2BI CACGAG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 1025, 1330
Bst6I CTCTTC 2 cut(s) 527, 1245
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 914
BstC8I GCNNGC 2 cut(s) 481, 799
BstDEI CTNAG 5 cut(s) 144, 394, 428, 633, 741
BstF5I GGATG 4 cut(s) 223, 388, 559, 859
BstFNI CGCG 1 cut(s) 1165
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 797
BstKTI GATC 4 cut(s) 262, 670, 784, 1169
BstMAI GTCTC 3 cut(s) 206, 770, 1031
BstMBI GATC 4 cut(s) 259, 667, 781, 1166
BstMWI GCNNNNNNNGC 4 cut(s) 89, 637, 895, 972
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 49
BstUI CGCG 1 cut(s) 1165
BstV2I GAAGAC 3 cut(s) 30, 302, 693
Bsu36I CCTNAGG 2 cut(s) 428, 633
BsuRI GGCC 3 cut(s) 631, 889, 1227
BtsCI GGATG 4 cut(s) 223, 388, 559, 859
BtuMI TCGCGA 1 cut(s) 1165
Cac8I GCNNGC 2 cut(s) 481, 799
CciI TCATGA 1 cut(s) 265
CfoI GCGC 2 cut(s) 7, 797
Cfr10I RCCGGY 1 cut(s) 889
Cfr13I GGNCC 1 cut(s) 473
CsiI ACCWGGT 1 cut(s) 49
Csp6I GTAC 4 cut(s) 162, 324, 663, 1324
CviAII CATG 2 cut(s) 266, 949
CviQI GTAC 4 cut(s) 162, 324, 663, 1324
DdeI CTNAG 5 cut(s) 144, 394, 428, 633, 741
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 261, 669, 783, 1168
DpnII GATC 4 cut(s) 259, 667, 781, 1166
EaeI YGGCCR 2 cut(s) 887, 1225
Eam1104I CTCTTC 2 cut(s) 527, 1245
EarI CTCTTC 2 cut(s) 527, 1245
Eco130I CCWWGG 2 cut(s) 168, 1228
Eco147I AGGCCT 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 1031
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 705
Eco81I CCTNAGG 2 cut(s) 428, 633
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 168, 1228
EcoT38I GRGCYC 1 cut(s) 183
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 168, 1228
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 2 cut(s) 269, 952
FaqI GGGAC 1 cut(s) 891
FatI CATG 2 cut(s) 265, 948
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 1 cut(s) 1153
Fnu4HI GCNGC 2 cut(s) 8, 1178
FokI GGATG 4 cut(s) 230, 395, 566, 866
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 8, 1178
FspBI CTAG 4 cut(s) 11, 480, 1139, 1182
GlaI GCGC 2 cut(s) 6, 796
GluI GCNGC 2 cut(s) 8, 1178
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 631, 889, 1227
HapII CCGG 3 cut(s) 476, 833, 890
HhaI GCGC 2 cut(s) 7, 797
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 269, 952
Hin6I GCGC 2 cut(s) 5, 795
HinP1I GCGC 2 cut(s) 5, 795
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 3 cut(s) 241, 494, 621
HpaII CCGG 3 cut(s) 476, 833, 890
HphI GGTGA 4 cut(s) 560, 766, 1208, 1214
Hpy166II GTNNAC 3 cut(s) 522, 1154, 1326
Hpy188I TCNGA 4 cut(s) 147, 493, 786, 819
Hpy188III TCNNGA 8 cut(s) 245, 266, 506, 625, 775, 1064, 1164, 1277
Hpy8I GTNNAC 3 cut(s) 522, 1154, 1326
HpyAV CCTTC 6 cut(s) 112, 598, 710, 1091, 1102, 1167
HpyCH4III ACNGT 2 cut(s) 1025, 1330
HpyCH4IV ACGT 2 cut(s) 969, 1322
HpyCH4V TGCA 4 cut(s) 92, 310, 872, 1296
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 637, 895, 972
HpyF3I CTNAG 5 cut(s) 144, 394, 428, 633, 741
HpySE526I ACGT 2 cut(s) 969, 1322
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 269, 952
HspAI GCGC 2 cut(s) 5, 795
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 4 cut(s) 259, 667, 781, 1166
LmnI GCTCC 2 cut(s) 467, 637
LweI GCATC 4 cut(s) 208, 373, 775, 881
MabI ACCWGGT 1 cut(s) 49
MaeI CTAG 4 cut(s) 11, 480, 1139, 1182
MaeII ACGT 2 cut(s) 969, 1322
MaeIII GTNAC 1 cut(s) 442
MalI GATC 4 cut(s) 261, 669, 783, 1168
MboI GATC 4 cut(s) 259, 667, 781, 1166
MfeI CAATTG 1 cut(s) 281
MhlI GDGCHC 2 cut(s) 183, 652
MlsI TGGCCA 1 cut(s) 1227
MluCI AATT 8 cut(s) 184, 281, 300, 317, 349, 371, 436, 1314
MluNI TGGCCA 1 cut(s) 1227
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 980
Mox20I TGGCCA 1 cut(s) 1227
MroXI GAANNNNTTC 1 cut(s) 1315
MscI TGGCCA 1 cut(s) 1227
MseI TTAA 6 cut(s) 132, 174, 600, 915, 1127, 1284
Msp20I TGGCCA 1 cut(s) 1227
MspCI CTTAAG 1 cut(s) 914
MspI CCGG 3 cut(s) 476, 833, 890
MspR9I CCNGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 1298
MvaI CCWGG 1 cut(s) 51
MvnI CGCG 1 cut(s) 1165
MwoI GCNNNNNNNGC 4 cut(s) 89, 637, 895, 972
NarI GGCGCC 1 cut(s) 5
NdeII GATC 4 cut(s) 259, 667, 781, 1166
NheI GCTAGC 1 cut(s) 479
NlaIII CATG 2 cut(s) 269, 952
NlaIV GGNNCC 2 cut(s) 6, 463
NruI TCGCGA 1 cut(s) 1165
PagI TCATGA 1 cut(s) 265
PceI AGGCCT 1 cut(s) 631
PctI GAATGC 1 cut(s) 1298
PdmI GAANNNNTTC 1 cut(s) 1315
PfeI GAWTC 2 cut(s) 494, 621
PkrI GCNGC 2 cut(s) 9, 1179
PleI GAGTC 1 cut(s) 249
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 249
PsiI TTATAA 1 cut(s) 902
Psp1406I AACGTT 1 cut(s) 969
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 6, 463
PspPI GGNCC 1 cut(s) 473
RruI TCGCGA 1 cut(s) 1165
RsaI GTAC 4 cut(s) 163, 325, 664, 1325
RsaNI GTAC 4 cut(s) 162, 324, 663, 1324
SaqAI TTAA 6 cut(s) 132, 174, 600, 915, 1127, 1284
SatI GCNGC 2 cut(s) 8, 1178
Sau3AI GATC 4 cut(s) 259, 667, 781, 1166
Sau96I GGNCC 1 cut(s) 473
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 2 cut(s) 183, 652
SexAI ACCWGGT 1 cut(s) 49
SfaNI GCATC 4 cut(s) 208, 373, 775, 881
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 473
SmlI CTYRAG 3 cut(s) 104, 914, 976
SmoI CTYRAG 3 cut(s) 104, 914, 976
Sse9I AATT 8 cut(s) 184, 281, 300, 317, 349, 371, 436, 1314
SseBI AGGCCT 1 cut(s) 631
SsiI CCGC 3 cut(s) 8, 1122, 1178
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 2 cut(s) 67, 1222
SspMI CTAG 4 cut(s) 11, 480, 1139, 1182
StuI AGGCCT 1 cut(s) 631
StyD4I CCNGG 1 cut(s) 49
StyI CCWWGG 2 cut(s) 168, 1228
TaaI ACNGT 2 cut(s) 1025, 1330
TaiI ACGT 2 cut(s) 972, 1325
TaqI TCGA 4 cut(s) 46, 244, 774, 1063
TasI AATT 8 cut(s) 184, 281, 300, 317, 349, 371, 436, 1314
TatI WGTACW 1 cut(s) 662
TauI GCSGC 2 cut(s) 10, 1180
TfiI GAWTC 2 cut(s) 494, 621
Tru1I TTAA 6 cut(s) 132, 174, 600, 915, 1127, 1284
Tru9I TTAA 6 cut(s) 132, 174, 600, 915, 1127, 1284
TspDTI ATGAA 7 cut(s) 19, 242, 342, 608, 965, 1284, 1305
TspGWI ACGGA 2 cut(s) 230, 307
Vha464I CTTAAG 1 cut(s) 914
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 4 cut(s) 317, 349, 371, 1314
XmiI GTMKAC 1 cut(s) 1153
XmnI GAANNNNTTC 1 cut(s) 1315
XspI CTAG 4 cut(s) 11, 480, 1139, 1182
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.