Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

64677972 .. 64679506

Gene Structure 1535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGGGAGGCTGCTGAGTTTGAAAGATTTTGAGGGCAAAGCAATTCGACGTCGTTCATCCTACCTTGATATTTTTCTTCAGGTTGCTAGTGTTCTTCAGAATAAGAAACTCAAGCAAAGTACGAAGGAGAAAAGTACTCATTTGAAAACCAAGATGGCCGGTATAGGGTTTAAAGAACCCATTTTCATGGTAGGGAAAGAGACTTATGCAAAGGGACAAAAATTTATGAACTCTGTTTTTGAATCTGTGAGGAAGATTGGTGGGTCAAAAAGAAAGGGTCTTGACAATTTTGAAGATCATGAAAGGGGTTTTCAATTCAAGAAGCAGAAGATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGCAAAAGAATTGAAGGTGGATGCGTTACACTCAGTTGGCACAATAAAGACAGAAAATTCTTTTCCTAGGGCAAACTGTATAATGAGTTGTGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCGAAGAATATCAAATTGAGGAAGCCAAAGAAGGAGATCACAACACAAATTATTGATGCTAACGGCTTGCCTGAAGAATACAAGAGAAAGATTGAAAATTTTGATAAGGCTAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACTGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTTTTCTGAATGCAGATGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCTACTTGAAGAAGAAGATCTAACCTTGAGGCAGTGGAACATGGAAAAGAAAACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACACGTTGGAATGAAGTCGCCGATAAAAACAATCTCAAGCAAAAAGATGTAGTCCAAGTTTGGTCATTCCGGGATGTGGGAAACAACCTTCACTTTGCTATTGTTTTGGTTAAGAAGGGTGAGAGAAAGGGTGGTGAACATAGTAGTAGTCGAGGGTATAGCCAGCCGCCTTCGCTATCAACAACACCGCGTGATATTGTTGATGGTGAAAGAAGAAGTGGTAGTGGTCAAGGAACAGAATCAAAGGAAGAAGGGATGATAGGAGTTAATAGCAATGTTGAGAGTAATAGTGAGAGAAGTAGTATGAGCAATGGCTCTAATGAAAATCATGAAAGTTTAAGCCAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

413

Amino Acids

46.6

Weight (kDa)

9.6

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	212 - 305	3e-16	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	682
AatII	GACGTC	1 cut(s)	52
AccII	CGCG	1 cut(s)	1081
AciI	CCGC	2 cut(s)	1058, 1079
AclWI	GGATC	1 cut(s)	797
AcoI	YGGCCR	2 cut(s)	156, 785
AcsI	RAATTY	4 cut(s)	221, 367, 433, 625
AcuI	CTGAAG	3 cut(s)	62, 80, 621
AcyI	GRCGYC	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	1082
AfaI	GTAC	4 cut(s)	121, 136, 346, 691
AfiI	CCNNNNNNNGG	2 cut(s)	165, 967
AflIII	ACRYGT	1 cut(s)	893
AluBI	AGCT	2 cut(s)	873, 879
AluI	AGCT	2 cut(s)	873, 879
Alw21I	GWGCWC	1 cut(s)	875
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	797
AoxI	GGCC	3 cut(s)	156, 521, 785
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	4 cut(s)	221, 367, 433, 625
AspA2I	CCTAGG	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	962
AsuHPI	GGTGA	5 cut(s)	506, 664, 1022, 1037, 1109
AvrII	CCTAGG	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	875
BccI	CCATC	3 cut(s)	148, 325, 1088
BceAI	ACGGC	1 cut(s)	607
BcnI	CCSGG	1 cut(s)	962
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	87, 444
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	2 cut(s)	11, 1058
BlnI	CCTAGG	1 cut(s)	443
BlsI	GCNGC	2 cut(s)	12, 1059
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	962
BmrFI	CCNGG	1 cut(s)	962
BmsI	GCATC	2 cut(s)	388, 574
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	4 cut(s)	95, 853, 859, 911
BpuMI	CCSGG	1 cut(s)	962
BsaAI	YACGTR	1 cut(s)	689
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	351, 443
BsaWI	WCCGGW	1 cut(s)	730
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 967
Bse118I	RCCGGY	2 cut(s)	158, 699
Bse1I	ACTGG	2 cut(s)	788, 788
Bse3DI	GCAATG	2 cut(s)	1171, 1207
BseDI	CCNNGG	2 cut(s)	351, 443
BseGI	GGATG	4 cut(s)	56, 403, 970, 1152
BseLI	CCNNNNNNNGG	2 cut(s)	165, 967
BseMI	GCAATG	2 cut(s)	1171, 1207
BseMII	CTCAG	2 cut(s)	5, 423
BseNI	ACTGG	2 cut(s)	788, 788
Bsh1236I	CGCG	1 cut(s)	1081
BshFI	GGCC	3 cut(s)	158, 523, 787
BsiHKAI	GWGCWC	1 cut(s)	875
BsiSI	CCGG	4 cut(s)	159, 700, 731, 961
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	165, 967
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	3 cut(s)	158, 523, 787
Bsp1286I	GDGCHC	1 cut(s)	875
Bsp143I	GATC	4 cut(s)	295, 564, 802, 823
BspACI	CCGC	2 cut(s)	1058, 1079
BspANI	GGCC	3 cut(s)	158, 523, 787
BspCNI	CTCAG	2 cut(s)	6, 422
BspFNI	CGCG	1 cut(s)	1081
BspHI	TCATGA	2 cut(s)	298, 1219
BspPI	GGATC	1 cut(s)	797
BsrDI	GCAATG	2 cut(s)	1171, 1207
BsrFI	RCCGGY	2 cut(s)	158, 699
BsrI	ACTGG	2 cut(s)	788, 788
BssAI	RCCGGY	2 cut(s)	158, 699
BssECI	CCNNGG	2 cut(s)	351, 443
BssMI	GATC	4 cut(s)	295, 564, 802, 823
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	443
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	1 cut(s)	476
BstACI	GRCGYC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	689
BstC8I	GCNNGC	3 cut(s)	596, 697, 1055
BstDEI	CTNAG	3 cut(s)	14, 409, 639
BstF5I	GGATG	4 cut(s)	56, 403, 970, 1152
BstFNI	CGCG	1 cut(s)	1081
BstKTI	GATC	4 cut(s)	298, 567, 805, 826
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	295, 564, 802, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	1063
BstSCI	CCNGG	1 cut(s)	960
BstUI	CGCG	1 cut(s)	1081
BstX2I	RGATCY	2 cut(s)	802, 823
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	2 cut(s)	802, 823
BsuRI	GGCC	3 cut(s)	158, 523, 787
BtsCI	GGATG	4 cut(s)	56, 403, 970, 1152
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	3 cut(s)	596, 697, 1055
CciI	TCATGA	2 cut(s)	298, 1219
Cfr10I	RCCGGY	2 cut(s)	158, 699
Csp6I	GTAC	4 cut(s)	120, 135, 345, 690
CviAII	CATG	4 cut(s)	187, 299, 847, 1220
CviQI	GTAC	4 cut(s)	120, 135, 345, 690
DdeI	CTNAG	3 cut(s)	14, 409, 639
DpnI	GATC	4 cut(s)	297, 566, 804, 825
DpnII	GATC	4 cut(s)	295, 564, 802, 823
DraI	TTTAAA	1 cut(s)	172
DraIII	CACNNNGTG	1 cut(s)	1082
DrdI	GACNNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	2 cut(s)	156, 785
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Ecl136II	GAGCTC	1 cut(s)	873
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	875
Eco53kI	GAGCTC	1 cut(s)	873
Eco57I	CTGAAG	3 cut(s)	62, 80, 621
EcoICRI	GAGCTC	1 cut(s)	873
EcoT14I	CCWWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	875
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	4 cut(s)	190, 302, 850, 1223
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	4 cut(s)	186, 298, 846, 1219
Fnu4HI	GCNGC	2 cut(s)	11, 1058
FokI	GGATG	4 cut(s)	43, 410, 977, 1159
FriOI	GRGCYC	1 cut(s)	875
Fsp4HI	GCNGC	2 cut(s)	11, 1058
FspBI	CTAG	2 cut(s)	87, 444
GluI	GCNGC	2 cut(s)	11, 1058
HaeIII	GGCC	3 cut(s)	158, 523, 787
HapII	CCGG	4 cut(s)	159, 700, 731, 961
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	190, 302, 850, 1223
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HinfI	GANTC	2 cut(s)	242, 1130
HpaII	CCGG	4 cut(s)	159, 700, 731, 961
HphI	GGTGA	5 cut(s)	506, 664, 1022, 1037, 1109
Hpy166II	GTNNAC	2 cut(s)	669, 1028
Hpy188I	TCNGA	3 cut(s)	99, 352, 744
Hpy188III	TCNNGA	4 cut(s)	281, 299, 319, 1220
Hpy8I	GTNNAC	2 cut(s)	669, 1028
Hpy99I	CGWCG	2 cut(s)	51, 54
HpyAV	CCTTC	8 cut(s)	118, 385, 553, 655, 989, 1000, 1071, 1136
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	3 cut(s)	49, 688, 895
HpyCH4V	TGCA	3 cut(s)	209, 749, 770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1063
HpyF3I	CTNAG	3 cut(s)	14, 409, 639
HpySE526I	ACGT	3 cut(s)	49, 688, 895
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	190, 302, 850, 1223
Kzo9I	GATC	4 cut(s)	295, 564, 802, 823
LpnPI	CCDG	9 cut(s)	65, 172, 612, 713, 744, 769, 801, 974, 1067
LweI	GCATC	2 cut(s)	388, 574
MaeI	CTAG	2 cut(s)	87, 444
MaeII	ACGT	3 cut(s)	49, 688, 895
MaeIII	GTNAC	2 cut(s)	402, 684
MalI	GATC	4 cut(s)	297, 566, 804, 825
MboI	GATC	4 cut(s)	295, 564, 802, 823
MflI	RGATCY	2 cut(s)	802, 823
MhlI	GDGCHC	1 cut(s)	875
MlsI	TGGCCA	1 cut(s)	787
MluNI	TGGCCA	1 cut(s)	787
MmeI	TCCRAC	1 cut(s)	878
MnlI	CCTC	8 cut(s)	25, 243, 346, 358, 513, 540, 828, 1037
Mox20I	TGGCCA	1 cut(s)	787
MscI	TGGCCA	1 cut(s)	787
MseI	TTAA	5 cut(s)	171, 474, 1002, 1158, 1229
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	787
MspI	CCGG	4 cut(s)	159, 700, 731, 961
MspR9I	CCNGG	1 cut(s)	962
Mva1269I	GAATGC	1 cut(s)	751
MvnI	CGCG	1 cut(s)	1081
MwoI	GCNNNNNNNGC	1 cut(s)	1063
NciI	CCSGG	1 cut(s)	962
NdeII	GATC	4 cut(s)	295, 564, 802, 823
NlaIII	CATG	4 cut(s)	190, 302, 850, 1223
NmuCI	GTSAC	1 cut(s)	684
PagI	TCATGA	2 cut(s)	298, 1219
PcsI	WCGNNNNNNNCGW	1 cut(s)	866
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	2 cut(s)	242, 1130
PfoI	TCCNGGA	1 cut(s)	960
PkrI	GCNGC	2 cut(s)	12, 1059
Ppu21I	YACGTR	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	875
PsuI	RGATCY	2 cut(s)	802, 823
RsaI	GTAC	4 cut(s)	121, 136, 346, 691
RsaNI	GTAC	4 cut(s)	120, 135, 345, 690
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	875
SaqAI	TTAA	5 cut(s)	171, 474, 1002, 1158, 1229
SatI	GCNGC	2 cut(s)	11, 1058
Sau3AI	GATC	4 cut(s)	295, 564, 802, 823
ScaI	AGTACT	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	962
SduI	GDGCHC	1 cut(s)	875
SfaNI	GCATC	2 cut(s)	388, 574
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	4 cut(s)	110, 832, 874, 926
SmoI	CTYRAG	4 cut(s)	110, 832, 874, 926
SsiI	CCGC	2 cut(s)	1058, 1079
SspMI	CTAG	2 cut(s)	87, 444
SstI	GAGCTC	1 cut(s)	875
StyD4I	CCNGG	1 cut(s)	960
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	3 cut(s)	52, 691, 898
TaqI	TCGA	2 cut(s)	46, 1042
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	1060
TfiI	GAWTC	2 cut(s)	242, 1130
Tru1I	TTAA	5 cut(s)	171, 474, 1002, 1158, 1229
Tru9I	TTAA	5 cut(s)	171, 474, 1002, 1158, 1229
TscAI	CASTG	1 cut(s)	845
TseFI	GTSAC	1 cut(s)	684
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	684
TspDTI	ATGAA	8 cut(s)	45, 175, 242, 315, 731, 918, 1227, 1236
TspRI	CASTG	1 cut(s)	845
XapI	RAATTY	4 cut(s)	221, 367, 433, 625
XmaJI	CCTAGG	1 cut(s)	443
XspI	CTAG	2 cut(s)	87, 444
ZraI	GACGTC	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.