Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

52775660 .. 52777124

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGAAGCCTCTACTGAGTATGAGAGATTTCAAGGGCAAAGAACTTCGACCTGGTTCATCCTTGGATATTTTTGGTCAGGTTGCTTGTGTTGCACGGGAGAAACTGAGGCAAAGGAGGAAGGAGAAAAATATTAAAATCAAAACCCAAATGGGTAGTAGTAGTACCCCCAAGATTAAAGAACCCAATTATGTAGCTGAAGCATTTTCATTTGGCTCCAAAGAGACGTATGCTAATATGAACAAAAGAAAGAGTCGAGAGGACGATGTTGATGATCATGGCAAGAGTTTTCAATTGAAACAACAGAAGATAATTTTGTTGCACAAGGAAATTGGTAGTACCTCCAAGACTAAAGAATCAAATACATCAGTAGGAAGAGAATTGGAGCAGGATCCATTATACTCAGTTGGCACAGTAAGGAGTGAAAGGTCTTTCCCTAGGGAAAAGTATATAACGAGCTCTGATTTGGGGTTTCAGGAAAAGAATGGGTTGCCAAAGAAGAAGAGTATTAATGGGGTTGAGTATGATACAGATTGGGGTCTAAAGTCCAAGCCGAAGAATATGAAGATTAAGAAGGAAAAGGGGTTGGGATTGAGGCCGAAGGAGCATGTCAGAGCACCAAAATATAATACTGATCCTAATGACTTGCCTGAAGAGTTGAAAAGGAAGATCGAAACTTTGGAAGGGATTGAAAGTTTTGAAAAAGCCAAGATGACTATGGTGATAGAAAAGCATTTGTTCAGTACTGATATGGCAAAAAGCGCTAATCGGTTGTCAATGCCTCTAAAACAAATCAAACCGGAGAGTTTTCTGGACGAGGATGAGATAAAGTTTCTTGCAATTCAAGAAGATTGGCCGGTTTCTGTTATAAGTCCCCTACTAGAAGATGAAGCTCTGACCTTCAGGCAGTGGAACATGAAAAAGGATAACGGCAGCGTTAGCTCAAGTTATGTGTTGAAAACACGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAAAGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCACTTTGCTCTTGTTTTGGTTGAGAAGTCAAAAGATGGTGGCTCAAGTAGTGAAGGTGATAGGTGTAGCCTACCTTCTTCACGATCAACAACGCCGCCTAGCAAGAGTGATGTTGATGGTGAAAGTACTAGTTGTGATATTGGCCAAGGAACAGAAGCAAAGGAACAAGAGATGATAGAAGGAGCTCAGATTAATGATGGGAGCAGTAGTGGGAATGGGAGAACTTCAACACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

427

Amino Acids

48.19

Weight (kDa)

9.27

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	236 - 325	1.5e-12	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
AciI	CCGC	1 cut(s)	1142
AclWI	GGATC	3 cut(s)	383, 396, 626
AcoI	YGGCCR	2 cut(s)	851, 1189
AcuI	CTGAAG	3 cut(s)	216, 669, 883
AfaI	GTAC	4 cut(s)	163, 337, 742, 1174
AfeI	AGCGCT	1 cut(s)	760
AfiI	CCNNNNNNNGG	1 cut(s)	1033
AflIII	ACRYGT	1 cut(s)	959
AgsI	TTSAA	9 cut(s)	31, 290, 295, 658, 689, 698, 842, 955, 1275
AhlI	ACTAGT	1 cut(s)	1175
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	194, 456, 890, 939, 1232
AluI	AGCT	5 cut(s)	194, 456, 890, 939, 1232
Alw21I	GWGCWC	3 cut(s)	458, 616, 1234
Alw26I	GTCTC	2 cut(s)	215, 995
AlwI	GGATC	3 cut(s)	383, 396, 626
Aor51HI	AGCGCT	1 cut(s)	760
AoxI	GGCC	3 cut(s)	593, 851, 1189
ApeKI	GCWGC	1 cut(s)	930
AseI	ATTAAT	2 cut(s)	507, 1239
AspA2I	CCTAGG	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	761
AsuHPI	GGTGA	3 cut(s)	730, 1115, 1178
AvrII	CCTAGG	1 cut(s)	434
BalI	TGGCCA	1 cut(s)	1191
BamHI	GGATCC	1 cut(s)	388
BanII	GRGCYC	2 cut(s)	458, 1234
BarI	GAAGNNNNNNTAC	2 cut(s)	1105, 1137
Bbv12I	GWGCWC	3 cut(s)	458, 616, 1234
BbvI	GCAGC	1 cut(s)	942
BccI	CCATC	3 cut(s)	1076, 1157, 1238
BceAI	ACGGC	1 cut(s)	943
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	215, 995
BcuI	ACTAGT	1 cut(s)	1175
BfaI	CTAG	4 cut(s)	435, 878, 1146, 1176
BfoI	RGCGCY	1 cut(s)	762
BisI	GCNGC	2 cut(s)	931, 1142
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	2 cut(s)	932, 1143
BmcAI	AGTACT	2 cut(s)	742, 1174
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	214, 390
BmrFI	CCNGG	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	925, 1075
BsaI	GGTCTC	1 cut(s)	995
BsaJI	CCNNGG	3 cut(s)	60, 434, 1192
BsaWI	WCCGGW	1 cut(s)	796
BsaXI	ACNNNNNCTCC	2 cut(s)	1240, 1270
Bsc4I	CCNNNNNNNGG	1 cut(s)	1033
Bse118I	RCCGGY	1 cut(s)	853
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	3 cut(s)	60, 434, 1192
BseGI	GGATG	2 cut(s)	56, 823
BseLI	CCNNNNNNNGG	1 cut(s)	1033
BseMII	CTCAG	4 cut(s)	5, 95, 414, 1247
BseXI	GCAGC	1 cut(s)	942
BshFI	GGCC	3 cut(s)	595, 853, 1191
BsiHKAI	GWGCWC	3 cut(s)	458, 616, 1234
BsiSI	CCGG	2 cut(s)	797, 854
BslFI	GGGAC	1 cut(s)	855
BslI	CCNNNNNNNGG	1 cut(s)	1033
BsmAI	GTCTC	2 cut(s)	215, 995
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	855
BsnI	GGCC	3 cut(s)	595, 853, 1191
Bso31I	GGTCTC	1 cut(s)	995
Bsp1286I	GDGCHC	3 cut(s)	458, 616, 1234
Bsp143I	GATC	5 cut(s)	271, 388, 631, 666, 1130
BspACI	CCGC	1 cut(s)	1142
BspANI	GGCC	3 cut(s)	595, 853, 1191
BspCNI	CTCAG	4 cut(s)	6, 96, 413, 1246
BspLI	GGNNCC	2 cut(s)	214, 390
BspPI	GGATC	3 cut(s)	383, 396, 626
BspTNI	GGTCTC	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	853
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	3 cut(s)	60, 434, 1192
BssMI	GATC	5 cut(s)	271, 388, 631, 666, 1130
BssT1I	CCWWGG	3 cut(s)	60, 434, 1192
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	3 cut(s)	367, 494, 645
BstDEI	CTNAG	4 cut(s)	14, 104, 400, 1233
BstF5I	GGATG	2 cut(s)	56, 823
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	5 cut(s)	274, 391, 634, 669, 1133
BstMAI	GTCTC	2 cut(s)	215, 995
BstMBI	GATC	5 cut(s)	271, 388, 631, 666, 1130
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 601, 758, 936
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	942
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	595, 853, 1191
BtsCI	GGATG	2 cut(s)	56, 823
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	1 cut(s)	911
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	1 cut(s)	853
CsiI	ACCWGGT	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	162, 336, 741, 1173
CviAII	CATG	3 cut(s)	275, 605, 913
CviQI	GTAC	4 cut(s)	162, 336, 741, 1173
DdeI	CTNAG	4 cut(s)	14, 104, 400, 1233
DpnI	GATC	5 cut(s)	273, 390, 633, 668, 1132
DpnII	GATC	5 cut(s)	271, 388, 631, 666, 1130
EaeI	YGGCCR	2 cut(s)	851, 1189
Eam1104I	CTCTTC	3 cut(s)	367, 494, 645
EarI	CTCTTC	3 cut(s)	367, 494, 645
Ecl136II	GAGCTC	2 cut(s)	456, 1232
Eco130I	CCWWGG	3 cut(s)	60, 434, 1192
Eco24I	GRGCYC	2 cut(s)	458, 1234
Eco31I	GGTCTC	1 cut(s)	995
Eco47III	AGCGCT	1 cut(s)	760
Eco53kI	GAGCTC	2 cut(s)	456, 1232
Eco57I	CTGAAG	3 cut(s)	216, 669, 883
EcoICRI	GAGCTC	2 cut(s)	456, 1232
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	3 cut(s)	60, 434, 1192
EcoT38I	GRGCYC	2 cut(s)	458, 1234
ErhI	CCWWGG	3 cut(s)	60, 434, 1192
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	3 cut(s)	278, 608, 916
FaqI	GGGAC	1 cut(s)	855
FatI	CATG	3 cut(s)	274, 604, 912
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	931, 1142
FokI	GGATG	2 cut(s)	43, 830
FriOI	GRGCYC	2 cut(s)	458, 1234
Fsp4HI	GCNGC	2 cut(s)	931, 1142
FspBI	CTAG	4 cut(s)	435, 878, 1146, 1176
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	2 cut(s)	931, 1142
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	3 cut(s)	595, 853, 1191
HapII	CCGG	2 cut(s)	797, 854
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	3 cut(s)	278, 608, 916
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HinfI	GANTC	2 cut(s)	250, 353
HpaII	CCGG	2 cut(s)	797, 854
HphI	GGTGA	3 cut(s)	730, 1115, 1178
Hpy188I	TCNGA	5 cut(s)	460, 611, 894, 1028, 1236
Hpy188III	TCNNGA	5 cut(s)	254, 473, 809, 842, 1128
HpyAV	CCTTC	9 cut(s)	112, 565, 592, 674, 907, 1055, 1094, 1131, 1220
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	224, 961
HpyCH4V	TGCA	3 cut(s)	92, 319, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 601, 758, 936
HpyF3I	CTNAG	4 cut(s)	14, 104, 400, 1233
HpySE526I	ACGT	2 cut(s)	224, 961
Hsp92II	CATG	3 cut(s)	278, 608, 916
HspAI	GCGC	1 cut(s)	759
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	271, 388, 631, 666, 1130
LmnI	GCTCC	5 cut(s)	218, 382, 601, 1229, 1248
Lsp1109I	GCAGC	1 cut(s)	942
MabI	ACCWGGT	1 cut(s)	49
MaeI	CTAG	4 cut(s)	435, 878, 1146, 1176
MaeII	ACGT	2 cut(s)	224, 961
MalI	GATC	5 cut(s)	273, 390, 633, 668, 1132
MboI	GATC	5 cut(s)	271, 388, 631, 666, 1130
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	3 cut(s)	458, 616, 1234
MlsI	TGGCCA	1 cut(s)	1191
MluCI	AATT	6 cut(s)	184, 290, 309, 327, 377, 837
MluNI	TGGCCA	1 cut(s)	1191
MlyI	GAGTC	1 cut(s)	259
MmeI	TCCRAC	1 cut(s)	944
MnlI	CCTC	8 cut(s)	18, 99, 108, 250, 349, 585, 789, 808
Mox20I	TGGCCA	1 cut(s)	1191
MscI	TGGCCA	1 cut(s)	1191
MseI	TTAA	5 cut(s)	132, 174, 507, 567, 1239
Msp20I	TGGCCA	1 cut(s)	1191
MspI	CCGG	2 cut(s)	797, 854
MspR9I	CCNGG	1 cut(s)	51
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	4 cut(s)	89, 601, 758, 936
NdeII	GATC	5 cut(s)	271, 388, 631, 666, 1130
NlaIII	CATG	3 cut(s)	278, 608, 916
NlaIV	GGNNCC	2 cut(s)	214, 390
NspI	RCATGY	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	932, 1143
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PshBI	ATTAAT	2 cut(s)	507, 1239
PsiI	TTATAA	1 cut(s)	866
Psp124BI	GAGCTC	2 cut(s)	458, 1234
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	214, 390
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	4 cut(s)	163, 337, 742, 1174
RsaNI	GTAC	4 cut(s)	162, 336, 741, 1173
SacI	GAGCTC	2 cut(s)	458, 1234
SaqAI	TTAA	5 cut(s)	132, 174, 507, 567, 1239
SatI	GCNGC	2 cut(s)	931, 1142
Sau3AI	GATC	5 cut(s)	271, 388, 631, 666, 1130
ScaI	AGTACT	2 cut(s)	742, 1174
SchI	GAGTC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	3 cut(s)	458, 616, 1234
SexAI	ACCWGGT	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	940, 1090
SmoI	CTYRAG	2 cut(s)	940, 1090
SpeI	ACTAGT	1 cut(s)	1175
Sse9I	AATT	6 cut(s)	184, 290, 309, 327, 377, 837
SsiI	CCGC	1 cut(s)	1142
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	4 cut(s)	435, 878, 1146, 1176
SstI	GAGCTC	2 cut(s)	458, 1234
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	3 cut(s)	60, 434, 1192
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	2 cut(s)	227, 964
TaqI	TCGA	3 cut(s)	46, 253, 669
TasI	AATT	6 cut(s)	184, 290, 309, 327, 377, 837
TatI	WGTACW	2 cut(s)	740, 1172
TauI	GCSGC	1 cut(s)	1144
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	5 cut(s)	132, 174, 507, 567, 1239
Tru9I	TTAA	5 cut(s)	132, 174, 507, 567, 1239
TscAI	CASTG	1 cut(s)	911
TseI	GCWGC	1 cut(s)	930
TspDTI	ATGAA	7 cut(s)	17, 45, 195, 251, 575, 900, 929
TspRI	CASTG	1 cut(s)	911
VspI	ATTAAT	2 cut(s)	507, 1239
XceI	RCATGY	1 cut(s)	608
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XmaJI	CCTAGG	1 cut(s)	434
XspI	CTAG	4 cut(s)	435, 878, 1146, 1176
ZrmI	AGTACT	2 cut(s)	742, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.