Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Forward (+)

1892347 .. 1893582

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGGGAGGCTGCTGAGTATGAAAGATTTTGAGGGCAAAGCAATTCGACCTCGTTCGTCCTACCTTGATATTTTTCTTCAGGTTGCTAGTGTTCTTCAGAATAAGAAACTCAAGCAAAGTATGGAGAAAAGTACTCATTTGAAAACCAAGATGGCCGGTATAGGGTTTAAAGAACCCATTTTCATGGTAGGGAAAGAGACTTATGCAAAGGGACAAAAATTTATGAACTCTGTTTTTGAATCTGTGAGGAAGATTGGTGGGTCAAAAAGAAAGGGTTTTGACAATTCTGACGATCATGAAAGTTTTCAATTCAAGAAGCAGAAGATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCATATTCGTCAGTCGTAAAAGAATTGAAGGTGGATGCGTTATACTCAATTGGCACAATAAAGACAGAAAATTCTTTTCCTAGGGCAAACTGTATAATGAGTTGTGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCGAAGAATATCAAATTGAGGAAGCCAAAGAAGGAGATCACAACACAAATTATTGATGCTAACGGCTTGCCTGAAGAATACAAGAGAAAGATTGAAAATTTTGATAAGGCTAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACCGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTTTTCTGAATGCAGATGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCTACTTGAAGAAGAAGATCTAACCTTGAGGCAGTGGAACATGGAAAAGAAAACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACACGTTGGAATGAAGTTGCCGATAAAAACAATCTCAAGCAAAAAGATGTAGTCCAAGTTTGGTCATTCCGGGATGTGGGAAACAACCTTCACTTTGCTATTGTTTTGGTTAAGAAGGGTGAGAGAAAGGGTGGTGAACATAGTAGTAGTCGAGGGTATAGCCAGCAGCCTTCGCTATCAACACCACCGCGTGATATTGTTGATGGTGAAAGAAGAAGTGGTAGTAGTCAAGGAACAGAATCAAAGGAAGAAGGGATGATAGGAGTTAATAGCAATGTTGAGAGTAATAGTGAGAGAAGTAGTATGAGCAATGGCTCTAATGAAAACCATGAAAGTTTAAGCCAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

411

Amino Acids

46.47

Weight (kDa)

9.48

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	210 - 303	3e-16	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	676
AccII	CGCG	1 cut(s)	1075
AciI	CCGC	2 cut(s)	687, 1073
AclWI	GGATC	1 cut(s)	791
AcoI	YGGCCR	2 cut(s)	153, 779
AcsI	RAATTY	3 cut(s)	218, 427, 619
AcuI	CTGAAG	3 cut(s)	62, 80, 615
AdeI	CACNNNGTG	1 cut(s)	1076
AfaI	GTAC	3 cut(s)	133, 340, 685
AfiI	CCNNNNNNNGG	3 cut(s)	162, 693, 961
AflIII	ACRYGT	1 cut(s)	887
AgsI	TTSAA	8 cut(s)	142, 239, 308, 313, 385, 617, 809, 883
AluBI	AGCT	2 cut(s)	867, 873
AluI	AGCT	2 cut(s)	867, 873
Alw21I	GWGCWC	1 cut(s)	869
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	791
AoxI	GGCC	3 cut(s)	153, 515, 779
ApeKI	GCWGC	2 cut(s)	10, 1051
ApoI	RAATTY	3 cut(s)	218, 427, 619
Asp700I	GAANNNNTTC	1 cut(s)	303
AspA2I	CCTAGG	1 cut(s)	437
AsuC2I	CCSGG	1 cut(s)	956
AsuHPI	GGTGA	5 cut(s)	500, 658, 1016, 1031, 1103
AvrII	CCTAGG	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	781
BanII	GRGCYC	1 cut(s)	869
Bbv12I	GWGCWC	1 cut(s)	869
BbvI	GCAGC	1 cut(s)	1063
BccI	CCATC	3 cut(s)	145, 319, 1082
BceAI	ACGGC	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	956
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	87, 438
BglII	AGATCT	1 cut(s)	817
BisI	GCNGC	2 cut(s)	11, 1052
BlnI	CCTAGG	1 cut(s)	437
BlsI	GCNGC	2 cut(s)	12, 1053
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	956
BmrFI	CCNGG	1 cut(s)	956
BmsI	GCATC	2 cut(s)	382, 568
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	4 cut(s)	95, 847, 853, 905
BpuMI	CCSGG	1 cut(s)	956
BsaAI	YACGTR	1 cut(s)	683
BsaJI	CCNNGG	2 cut(s)	345, 437
BsaWI	WCCGGW	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 693, 961
Bse118I	RCCGGY	2 cut(s)	155, 693
Bse1I	ACTGG	2 cut(s)	782, 782
Bse3DI	GCAATG	2 cut(s)	1165, 1201
BseDI	CCNNGG	2 cut(s)	345, 437
BseGI	GGATG	3 cut(s)	397, 964, 1146
BseLI	CCNNNNNNNGG	3 cut(s)	162, 693, 961
BseMI	GCAATG	2 cut(s)	1165, 1201
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	782, 782
BseXI	GCAGC	1 cut(s)	1063
Bsh1236I	CGCG	1 cut(s)	1075
BshFI	GGCC	3 cut(s)	155, 517, 781
BsiHKAI	GWGCWC	1 cut(s)	869
BsiSI	CCGG	4 cut(s)	156, 694, 725, 955
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	162, 693, 961
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	3 cut(s)	155, 517, 781
Bsp1286I	GDGCHC	1 cut(s)	869
Bsp143I	GATC	4 cut(s)	292, 558, 796, 817
BspACI	CCGC	2 cut(s)	687, 1073
BspANI	GGCC	3 cut(s)	155, 517, 781
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	1075
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	1 cut(s)	791
BsrDI	GCAATG	2 cut(s)	1165, 1201
BsrFI	RCCGGY	2 cut(s)	155, 693
BsrI	ACTGG	2 cut(s)	782, 782
BssAI	RCCGGY	2 cut(s)	155, 693
BssECI	CCNNGG	2 cut(s)	345, 437
BssMI	GATC	4 cut(s)	292, 558, 796, 817
BssT1I	CCWWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	683
BstC8I	GCNNGC	3 cut(s)	590, 691, 1049
BstDEI	CTNAG	2 cut(s)	14, 633
BstF5I	GGATG	3 cut(s)	397, 964, 1146
BstFNI	CGCG	1 cut(s)	1075
BstKTI	GATC	4 cut(s)	295, 561, 799, 820
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	292, 558, 796, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	1057
BstSCI	CCNGG	1 cut(s)	954
BstUI	CGCG	1 cut(s)	1075
BstV1I	GCAGC	1 cut(s)	1063
BstX2I	RGATCY	2 cut(s)	796, 817
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	2 cut(s)	796, 817
BsuRI	GGCC	3 cut(s)	155, 517, 781
BtsCI	GGATG	3 cut(s)	397, 964, 1146
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	1 cut(s)	839
Cac8I	GCNNGC	3 cut(s)	590, 691, 1049
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	2 cut(s)	155, 693
Csp6I	GTAC	3 cut(s)	132, 339, 684
CviAII	CATG	4 cut(s)	184, 296, 841, 1214
CviQI	GTAC	3 cut(s)	132, 339, 684
DdeI	CTNAG	2 cut(s)	14, 633
DpnI	GATC	4 cut(s)	294, 560, 798, 819
DpnII	GATC	4 cut(s)	292, 558, 796, 817
DraI	TTTAAA	1 cut(s)	169
DraIII	CACNNNGTG	1 cut(s)	1076
DrdI	GACNNNNNNGTC	1 cut(s)	676
DseDI	GACNNNNNNGTC	1 cut(s)	676
EaeI	YGGCCR	2 cut(s)	153, 779
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Ecl136II	GAGCTC	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	869
Eco53kI	GAGCTC	1 cut(s)	867
Eco57I	CTGAAG	3 cut(s)	62, 80, 615
EcoICRI	GAGCTC	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	869
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	4 cut(s)	187, 299, 844, 1217
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	4 cut(s)	183, 295, 840, 1213
Fnu4HI	GCNGC	2 cut(s)	11, 1052
FokI	GGATG	3 cut(s)	404, 971, 1153
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	2 cut(s)	11, 1052
FspBI	CTAG	2 cut(s)	87, 438
GluI	GCNGC	2 cut(s)	11, 1052
HaeIII	GGCC	3 cut(s)	155, 517, 781
HapII	CCGG	4 cut(s)	156, 694, 725, 955
Hin1II	CATG	4 cut(s)	187, 299, 844, 1217
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	2 cut(s)	239, 1124
HpaII	CCGG	4 cut(s)	156, 694, 725, 955
HphI	GGTGA	5 cut(s)	500, 658, 1016, 1031, 1103
Hpy166II	GTNNAC	2 cut(s)	663, 1022
Hpy188I	TCNGA	4 cut(s)	99, 289, 346, 738
Hpy188III	TCNNGA	2 cut(s)	296, 313
Hpy8I	GTNNAC	2 cut(s)	663, 1022
HpyAV	CCTTC	7 cut(s)	379, 547, 649, 983, 994, 1065, 1130
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4IV	ACGT	2 cut(s)	682, 889
HpyCH4V	TGCA	3 cut(s)	206, 743, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1057
HpyF3I	CTNAG	2 cut(s)	14, 633
HpySE526I	ACGT	2 cut(s)	682, 889
Hsp92II	CATG	4 cut(s)	187, 299, 844, 1217
Kzo9I	GATC	4 cut(s)	292, 558, 796, 817
LpnPI	CCDG	9 cut(s)	65, 169, 606, 707, 738, 763, 795, 968, 1061
Lsp1109I	GCAGC	1 cut(s)	1063
LweI	GCATC	2 cut(s)	382, 568
MaeI	CTAG	2 cut(s)	87, 438
MaeII	ACGT	2 cut(s)	682, 889
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	4 cut(s)	294, 560, 798, 819
MboI	GATC	4 cut(s)	292, 558, 796, 817
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	796, 817
MhlI	GDGCHC	1 cut(s)	869
MlsI	TGGCCA	1 cut(s)	781
MluNI	TGGCCA	1 cut(s)	781
MmeI	TCCRAC	1 cut(s)	872
MnlI	CCTC	9 cut(s)	25, 60, 240, 340, 352, 507, 534, 822, 1031
Mox20I	TGGCCA	1 cut(s)	781
MroXI	GAANNNNTTC	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	781
MseI	TTAA	5 cut(s)	168, 468, 996, 1152, 1223
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	781
MspI	CCGG	4 cut(s)	156, 694, 725, 955
MspR9I	CCNGG	1 cut(s)	956
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	745
MvnI	CGCG	1 cut(s)	1075
MwoI	GCNNNNNNNGC	1 cut(s)	1057
NciI	CCSGG	1 cut(s)	956
NdeII	GATC	4 cut(s)	292, 558, 796, 817
NlaIII	CATG	4 cut(s)	187, 299, 844, 1217
NmuCI	GTSAC	1 cut(s)	678
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	860
PctI	GAATGC	1 cut(s)	745
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	239, 1124
PfoI	TCCNGGA	1 cut(s)	954
PkrI	GCNGC	2 cut(s)	12, 1053
Ppu21I	YACGTR	1 cut(s)	683
Psp124BI	GAGCTC	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	796, 817
RsaI	GTAC	3 cut(s)	133, 340, 685
RsaNI	GTAC	3 cut(s)	132, 339, 684
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	869
SaqAI	TTAA	5 cut(s)	168, 468, 996, 1152, 1223
SatI	GCNGC	2 cut(s)	11, 1052
Sau3AI	GATC	4 cut(s)	292, 558, 796, 817
ScaI	AGTACT	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	956
SduI	GDGCHC	1 cut(s)	869
SfaNI	GCATC	2 cut(s)	382, 568
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	4 cut(s)	110, 826, 868, 920
SmoI	CTYRAG	4 cut(s)	110, 826, 868, 920
SsiI	CCGC	2 cut(s)	687, 1073
SspMI	CTAG	2 cut(s)	87, 438
SstI	GAGCTC	1 cut(s)	869
StyD4I	CCNGG	1 cut(s)	954
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	449
TaiI	ACGT	2 cut(s)	685, 892
TaqI	TCGA	2 cut(s)	46, 1036
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	239, 1124
Tru1I	TTAA	5 cut(s)	168, 468, 996, 1152, 1223
Tru9I	TTAA	5 cut(s)	168, 468, 996, 1152, 1223
TscAI	CASTG	1 cut(s)	839
TseFI	GTSAC	1 cut(s)	678
TseI	GCWGC	2 cut(s)	10, 1051
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	8 cut(s)	35, 172, 239, 312, 725, 912, 1221, 1230
TspRI	CASTG	1 cut(s)	839
XapI	RAATTY	3 cut(s)	218, 427, 619
XmaJI	CCTAGG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	2 cut(s)	87, 438
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.