Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

66756973 .. 66757878

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGTAAAAGAATTGAAGGTGGATGCGTTATACTCAGTTGGCACAATAAAGACAGAAAATTCTTTGCCTAGGGCAAACTGTATAATGAGTTGTGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCAAAGAATATCAAATTGAGGAAGCCAAAGAAGGAGATCACAACACAAATTATTGATGCTAACGGTTTGCCTGAAGAATACAAGAGAAAGATTGAAAATTTTGATAAGGCTAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATCTGTCACGTACCGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTTTTCTGGATGCAGAAGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCTAATTGAAGAAGAAGATTTGACCTTGAGGCAGTGGAACATGGAAAAGAAAACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACACGTTGGAATGAAGTTGCCGATAAAAACAATCTCAAGGAAAAAGACGTAGTACAAGTTTGGTCATTCCGGGATGTGGGAAACAACCTTCACTTTGCTATTGTTTTGGTTAAGAAGGGTGAGAGAAAGGGTGGTGAACATAGTAGTAGTCGAGGGTATAGCCAGCCGCCTTCGCTATCAACAACACCGCGTGATATTGTTGATGGTGAAAGAAGAAGTGGTAGTGGTCAAGGAACAGAATCAAAGGAAGAAGGGATGATAGGAGTTAATAGCAATGTTGAGAGTAATAGTGAGAGAAGTACTATGAGCAATGGCTCTAATGAAAAACATGAAAGTTTAAGCCAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

301

Amino Acids

33.75

Weight (kDa)

8.88

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	100 - 193	6.8e-16	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccII	CGCG	1 cut(s)	745
AciI	CCGC	3 cut(s)	357, 722, 743
AclWI	GGATC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	449
AcsI	RAATTY	3 cut(s)	31, 97, 289
AcuI	CTGAAG	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	4 cut(s)	10, 355, 609, 856
AfiI	CCNNNNNNNGG	2 cut(s)	363, 631
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	4 cut(s)	55, 287, 479, 553
AluBI	AGCT	2 cut(s)	537, 543
AluI	AGCT	2 cut(s)	537, 543
Alw21I	GWGCWC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	2 cut(s)	185, 449
ApoI	RAATTY	3 cut(s)	31, 97, 289
AspA2I	CCTAGG	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	5 cut(s)	170, 328, 686, 701, 773
AvrII	CCTAGG	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	539
BccI	CCATC	1 cut(s)	752
BcnI	CCSGG	1 cut(s)	626
BfaI	CTAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	722
BlnI	CCTAGG	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	723
BmcAI	AGTACT	1 cut(s)	856
Bme1390I	CCNGG	1 cut(s)	626
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	3 cut(s)	52, 238, 400
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	3 cut(s)	517, 523, 575
BpuMI	CCSGG	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	15, 107
BsaWI	WCCGGW	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 631
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	452, 452
Bse3DI	GCAATG	2 cut(s)	835, 871
BseDI	CCNNGG	2 cut(s)	15, 107
BseGI	GGATG	4 cut(s)	67, 415, 634, 816
BseLI	CCNNNNNNNGG	2 cut(s)	363, 631
BseMI	GCAATG	2 cut(s)	835, 871
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	452, 452
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	2 cut(s)	187, 451
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	3 cut(s)	364, 395, 625
BslI	CCNNNNNNNGG	2 cut(s)	363, 631
BsnI	GGCC	2 cut(s)	187, 451
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	228, 343, 466
BspACI	CCGC	3 cut(s)	357, 722, 743
BspANI	GGCC	2 cut(s)	187, 451
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	745
BspPI	GGATC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	835, 871
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	452, 452
BssAI	RCCGGY	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	15, 107
BssMI	GATC	3 cut(s)	228, 343, 466
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	119, 257
Bst6I	CTCTTC	2 cut(s)	140, 411
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	361, 719
BstDEI	CTNAG	2 cut(s)	73, 303
BstF5I	GGATG	4 cut(s)	67, 415, 634, 816
BstFNI	CGCG	1 cut(s)	745
BstKTI	GATC	3 cut(s)	231, 346, 469
BstMBI	GATC	3 cut(s)	228, 343, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	624
BstUI	CGCG	1 cut(s)	745
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	187, 451
BtsCI	GGATG	4 cut(s)	67, 415, 634, 816
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	2 cut(s)	361, 719
Cfr10I	RCCGGY	1 cut(s)	363
Csp6I	GTAC	4 cut(s)	9, 354, 608, 855
CviAII	CATG	2 cut(s)	511, 884
CviQI	GTAC	4 cut(s)	9, 354, 608, 855
DdeI	CTNAG	2 cut(s)	73, 303
DpnI	GATC	3 cut(s)	230, 345, 468
DpnII	GATC	3 cut(s)	228, 343, 466
DraIII	CACNNNGTG	1 cut(s)	746
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	2 cut(s)	140, 411
EarI	CTCTTC	2 cut(s)	140, 411
Ecl136II	GAGCTC	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	539
Eco53kI	GAGCTC	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	537
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	514, 887
FatI	CATG	2 cut(s)	510, 883
Fnu4HI	GCNGC	1 cut(s)	722
FokI	GGATG	4 cut(s)	74, 422, 641, 823
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	722
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	1 cut(s)	722
HaeIII	GGCC	2 cut(s)	187, 451
HapII	CCGG	3 cut(s)	364, 395, 625
Hin1II	CATG	2 cut(s)	514, 887
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	794
HpaII	CCGG	3 cut(s)	364, 395, 625
HphI	GGTGA	5 cut(s)	170, 328, 686, 701, 773
Hpy166II	GTNNAC	2 cut(s)	333, 692
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	407
Hpy8I	GTNNAC	2 cut(s)	333, 692
HpyAV	CCTTC	7 cut(s)	49, 217, 319, 653, 664, 735, 800
HpyCH4III	ACNGT	2 cut(s)	119, 257
HpyCH4IV	ACGT	3 cut(s)	352, 559, 603
HpyCH4V	TGCA	2 cut(s)	413, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	727
HpyF3I	CTNAG	2 cut(s)	73, 303
HpySE526I	ACGT	3 cut(s)	352, 559, 603
Hsp92II	CATG	2 cut(s)	514, 887
Kzo9I	GATC	3 cut(s)	228, 343, 466
LpnPI	CCDG	8 cut(s)	276, 377, 392, 408, 433, 465, 638, 731
LweI	GCATC	3 cut(s)	52, 238, 400
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	3 cut(s)	352, 559, 603
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	3 cut(s)	230, 345, 468
MboI	GATC	3 cut(s)	228, 343, 466
MboII	GAAGA	9 cut(s)	154, 157, 278, 428, 491, 494, 497, 780, 815
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	539
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	7 cut(s)	31, 50, 97, 206, 240, 289, 474
MluNI	TGGCCA	1 cut(s)	451
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	6 cut(s)	10, 22, 177, 204, 492, 701
Mox20I	TGGCCA	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	4 cut(s)	138, 666, 822, 893
Msp20I	TGGCCA	1 cut(s)	451
MspI	CCGG	3 cut(s)	364, 395, 625
MspR9I	CCNGG	1 cut(s)	626
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	1 cut(s)	727
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	3 cut(s)	228, 343, 466
NlaIII	CATG	2 cut(s)	514, 887
NmuCI	GTSAC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	794
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	1 cut(s)	723
Ppu21I	YACGTR	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	4 cut(s)	10, 355, 609, 856
RsaNI	GTAC	4 cut(s)	9, 354, 608, 855
SacI	GAGCTC	1 cut(s)	539
SaqAI	TTAA	4 cut(s)	138, 666, 822, 893
SatI	GCNGC	1 cut(s)	722
Sau3AI	GATC	3 cut(s)	228, 343, 466
ScaI	AGTACT	1 cut(s)	856
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	9 cut(s)	14, 60, 355, 497, 539, 545, 562, 606, 645
SfaNI	GCATC	3 cut(s)	52, 238, 400
SmlI	CTYRAG	3 cut(s)	496, 538, 590
SmoI	CTYRAG	3 cut(s)	496, 538, 590
Sse9I	AATT	7 cut(s)	31, 50, 97, 206, 240, 289, 474
SsiI	CCGC	3 cut(s)	357, 722, 743
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	539
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	119, 257
TaiI	ACGT	3 cut(s)	355, 562, 606
TaqI	TCGA	1 cut(s)	706
TasI	AATT	7 cut(s)	31, 50, 97, 206, 240, 289, 474
TatI	WGTACW	2 cut(s)	607, 854
TauI	GCSGC	1 cut(s)	724
TfiI	GAWTC	1 cut(s)	794
Tru1I	TTAA	4 cut(s)	138, 666, 822, 893
Tru9I	TTAA	4 cut(s)	138, 666, 822, 893
TscAI	CASTG	1 cut(s)	509
TseFI	GTSAC	1 cut(s)	348
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	4 cut(s)	395, 582, 891, 900
TspRI	CASTG	1 cut(s)	509
XapI	RAATTY	3 cut(s)	31, 97, 289
XmaJI	CCTAGG	1 cut(s)	107
XspI	CTAG	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.