Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000766

Physical Location & Seq

Genomic Coordinates Reverse (-)

64687948 .. 64689154

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG435800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGGAGGCTGCTGAGTATGAAAGATTTTGAGGGCAAAGCAATTCGACCTCGTTCGTCCTACCTTGATATTTTTCTTCAGGTTGCTAGTGTTCTTCAGAATAAGAAACTCAAGCAAAGTATGGAGAAAAGTACTCATTTGAAAACCAAGATGGCCGGTATAGGGTTTAAAGAACCCATTTCCATGGTAGGGAAAGAGGCTTATGCAAAGGGACAAAAATTTATGAACTCTGTTTTTGAATCTGTGAGGAAGATTGGTGGGTCAAAAAGAAAGGGTTTTGACAATTTTGACGATCATGAAAGGGGTTTTCAATTCAAGAAGCAGAAGATGGATATGGGTAGTACCTCCGAGGCTAAAGAACCAAATTCGTCAGTCGTAAAAGAATTGAAGGTGGATGCGTTATACTCAGTTGGCACAATAAAGACAGAAAATTCTTTTCCTAGGGCAAACTGTATAATGAGTTGTGATATTAAGAAGAAGAGTGCTAATGGTGATGATGATAAACAATGGGGTTTGAGGCCGAAGCCGAAGAATATTAAATTGAGGAAGCCAAAGAGGAGATCACAACACAAGGCGACTTTGGTGATACAGAAGGAGTTGACCAAGACTGATTTGTCACGTACTGCTTGCCGGTTGTCAATGCCTATGAACCAAATCAAACCGGAGAGTAGTTTTCTGAGTGCAGATGAGATAAAGTTTCTTGCAAAACAAAATGACTGGCCAGTTTCGGTTATAGATCCCCAACTTGAAGAAGAAGATCTAACCTTGAGGCAGTGGAACATGGAAAAGAACACGGGTAAGACGAGCTCAAGCTATGTGTTGAAAACAAGTTGGAACGAAGTTCGCAGGAAAAATGGTCTCAAACGAAATGATGTAATCCAAGTTTGGTCATTCCGAGATGTGGGAAACAACCTTCATTTTGCTCTTGTTTTGGTAGAGAAGTCAAAAGATATGCTCCGGTCAGGTCCGCCAGTGTTTTGGAAATTGTATAGACGGTCTTGGAAGAGAAAACAATGTGCCACCCCAATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF313

Protein Analysis

344

Amino Acids

39.57

Weight (kDa)

10.0

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At2g31720-like	PF03754	188 - 281	4e-15	B3 domain-containing protein At2g31720-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05920 AT1G05930 AT1G32030 AT2G27410 AT2G31420 AT2G31460 AT2G32645 AT3G24850 AT3G49610 AT5G24050 AT5G38490 AT5G38500
fragaria_vesca	FvH4_6g01440 FvH4_7g12330 FvH4_7g31340 FvH4_7g31730
malus_domestica	MD01G1220100.v1.1 MD07G1290000.v1.1
prunus_persica	Prupe.2G159700_v2.0.a1 Prupe.2G278500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380921 RchiOBHm_Chr1g0380951
rosa_laevigata	RLG00000026257 RLG00000026259 RLG00000026262 RLG00000026304 RLG00000028431
rosa_multiflora	Rmu_co8079062.1_g000001 Rmu_sc0005371.1_g000007 Rmu_sc0013826.1_g000004 Rmu_sc0018708.1_g000005 Rmu_sc0041327.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278910 Rroxscaffold_4G00278920 Rroxscaffold_4G00278960 Rroxscaffold_4G00279400 Rroxscaffold_4G00304070
rosa_rugosa	Rorug01G0216400 Rorug01G0216500 Rorug01G0420900 Rorug01G0425600 Rorug01G0425700
rosa_samantha	Rh1AG230900 Rh1AG445200 Rh1AG449300 Rh1AG449600 Rh1AG449800 Rh1BG200700 Rh1BG400300 Rh1BG400400 Rh1BG405000 Rh1BG405100 Rh1BG405300 Rh1BG405500 Rh1CG214900 Rh1CG419000 Rh1CG419200 Rh1CG419500 Rh1DG228300 Rh1DG430300 Rh1DG430400 Rh1DG435400 Rh1DG435600 Rh1DG435800 Rh1DG436000
rosa_wichuraiana	Rw1G020070 Rw1G038740 Rw1G039160 Rw1G039180 Rw3G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	613
AciI	CCGC	1 cut(s)	968
AclWI	GGATC	1 cut(s)	731
AcoI	YGGCCR	2 cut(s)	153, 719
AcsI	RAATTY	3 cut(s)	218, 364, 430
AcuI	CTGAAG	2 cut(s)	62, 80
AfaI	GTAC	3 cut(s)	133, 343, 622
AfiI	CCNNNNNNNGG	3 cut(s)	162, 189, 901
AgsI	TTSAA	7 cut(s)	142, 239, 311, 316, 388, 749, 823
AluBI	AGCT	2 cut(s)	807, 813
AluI	AGCT	2 cut(s)	807, 813
Alw21I	GWGCWC	1 cut(s)	809
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	1 cut(s)	731
AoxI	GGCC	3 cut(s)	153, 518, 719
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	3 cut(s)	218, 364, 430
AspA2I	CCTAGG	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	965
AsuHPI	GGTGA	2 cut(s)	503, 595
AvaII	GGWCC	1 cut(s)	965
AvrII	CCTAGG	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	809
BccI	CCATC	2 cut(s)	145, 322
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	2 cut(s)	87, 441
BglII	AGATCT	1 cut(s)	757
BisI	GCNGC	1 cut(s)	11
BlnI	CCTAGG	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	12
BmcAI	AGTACT	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	965
BmgT120I	GGNCC	1 cut(s)	965
BmsI	GCATC	1 cut(s)	385
BpuEI	CTTGAG	3 cut(s)	95, 787, 793
BsaAI	YACGTR	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	183, 348, 440
BsaWI	WCCGGW	2 cut(s)	661, 957
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 189, 901
Bse118I	RCCGGY	2 cut(s)	155, 630
Bse1I	ACTGG	3 cut(s)	722, 722, 971
BseDI	CCNNGG	3 cut(s)	183, 348, 440
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	3 cut(s)	162, 189, 901
BseMII	CTCAG	3 cut(s)	5, 420, 668
BseNI	ACTGG	3 cut(s)	722, 722, 971
BseRI	GAGGAG	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	3 cut(s)	155, 520, 721
BsiHKAI	GWGCWC	1 cut(s)	809
BsiSI	CCGG	4 cut(s)	156, 631, 662, 958
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	162, 189, 901
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	3 cut(s)	155, 520, 721
Bso31I	GGTCTC	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp143I	GATC	4 cut(s)	292, 560, 736, 757
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	968
BspANI	GGCC	3 cut(s)	155, 520, 721
BspCNI	CTCAG	3 cut(s)	6, 419, 669
BspHI	TCATGA	1 cut(s)	295
BspPI	GGATC	1 cut(s)	731
BspTNI	GGTCTC	1 cut(s)	863
BsrFI	RCCGGY	2 cut(s)	155, 630
BsrI	ACTGG	3 cut(s)	722, 722, 971
BssAI	RCCGGY	2 cut(s)	155, 630
BssECI	CCNNGG	3 cut(s)	183, 348, 440
BssMI	GATC	4 cut(s)	292, 560, 736, 757
BssT1I	CCWWGG	2 cut(s)	183, 440
Bst4CI	ACNGT	2 cut(s)	452, 996
Bst6I	CTCTTC	2 cut(s)	473, 998
BstBAI	YACGTR	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	628
BstDEI	CTNAG	3 cut(s)	14, 406, 677
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	4 cut(s)	295, 563, 739, 760
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	4 cut(s)	292, 560, 736, 757
BstX2I	RGATCY	2 cut(s)	736, 757
BstXI	CCANNNNNNTGG	3 cut(s)	184, 978, 1027
BstYI	RGATCY	2 cut(s)	736, 757
BsuRI	GGCC	3 cut(s)	155, 520, 721
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	2 cut(s)	779, 978
Cac8I	GCNNGC	1 cut(s)	628
CciI	TCATGA	1 cut(s)	295
Cfr10I	RCCGGY	2 cut(s)	155, 630
Cfr13I	GGNCC	1 cut(s)	965
Csp6I	GTAC	3 cut(s)	132, 342, 621
CviAII	CATG	3 cut(s)	184, 296, 781
CviQI	GTAC	3 cut(s)	132, 342, 621
DdeI	CTNAG	3 cut(s)	14, 406, 677
DpnI	GATC	4 cut(s)	294, 562, 738, 759
DpnII	GATC	4 cut(s)	292, 560, 736, 757
DraI	TTTAAA	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	613
DseDI	GACNNNNNNGTC	1 cut(s)	613
EaeI	YGGCCR	2 cut(s)	153, 719
Eam1104I	CTCTTC	2 cut(s)	473, 998
EarI	CTCTTC	2 cut(s)	473, 998
EciI	GGCGGA	1 cut(s)	957
Ecl136II	GAGCTC	1 cut(s)	807
Eco130I	CCWWGG	2 cut(s)	183, 440
Eco24I	GRGCYC	1 cut(s)	809
Eco31I	GGTCTC	1 cut(s)	863
Eco47I	GGWCC	1 cut(s)	965
Eco53kI	GAGCTC	1 cut(s)	807
Eco57I	CTGAAG	2 cut(s)	62, 80
EcoICRI	GAGCTC	1 cut(s)	807
EcoT14I	CCWWGG	2 cut(s)	183, 440
EcoT38I	GRGCYC	1 cut(s)	809
ErhI	CCWWGG	2 cut(s)	183, 440
FaeI	CATG	3 cut(s)	187, 299, 784
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	3 cut(s)	183, 295, 780
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	407
FriOI	GRGCYC	1 cut(s)	809
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	2 cut(s)	87, 441
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	155, 520, 721
HapII	CCGG	4 cut(s)	156, 631, 662, 958
Hin1II	CATG	3 cut(s)	187, 299, 784
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	4 cut(s)	156, 631, 662, 958
HphI	GGTGA	2 cut(s)	503, 595
Hpy166II	GTNNAC	1 cut(s)	600
Hpy188I	TCNGA	4 cut(s)	99, 349, 678, 896
Hpy188III	TCNNGA	2 cut(s)	296, 316
Hpy8I	GTNNAC	1 cut(s)	600
HpyAV	CCTTC	3 cut(s)	382, 586, 923
HpyCH4III	ACNGT	2 cut(s)	452, 996
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	3 cut(s)	206, 683, 704
HpyF3I	CTNAG	3 cut(s)	14, 406, 677
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	187, 299, 784
Kzo9I	GATC	4 cut(s)	292, 560, 736, 757
LmnI	GCTCC	1 cut(s)	960
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	87, 441
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	1 cut(s)	615
MalI	GATC	4 cut(s)	294, 562, 738, 759
MboI	GATC	4 cut(s)	292, 560, 736, 757
MflI	RGATCY	2 cut(s)	736, 757
MhlI	GDGCHC	1 cut(s)	809
MlsI	TGGCCA	1 cut(s)	721
MluCI	AATT	9 cut(s)	42, 218, 283, 311, 364, 383, 430, 539, 983
MluNI	TGGCCA	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	812
Mox20I	TGGCCA	1 cut(s)	721
MscI	TGGCCA	1 cut(s)	721
MseI	TTAA	3 cut(s)	168, 471, 537
MslI	CAYNNNNRTG	2 cut(s)	182, 1025
Msp20I	TGGCCA	1 cut(s)	721
MspI	CCGG	4 cut(s)	156, 631, 662, 958
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	4 cut(s)	292, 560, 736, 757
NlaIII	CATG	3 cut(s)	187, 299, 784
NmuCI	GTSAC	1 cut(s)	615
PagI	TCATGA	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	800
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	809
PspPI	GGNCC	1 cut(s)	965
PsuI	RGATCY	2 cut(s)	736, 757
RsaI	GTAC	3 cut(s)	133, 343, 622
RsaNI	GTAC	3 cut(s)	132, 342, 621
RseI	CAYNNNNRTG	2 cut(s)	182, 1025
SacI	GAGCTC	1 cut(s)	809
SaqAI	TTAA	3 cut(s)	168, 471, 537
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	4 cut(s)	292, 560, 736, 757
Sau96I	GGNCC	1 cut(s)	965
ScaI	AGTACT	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	1 cut(s)	385
SinI	GGWCC	1 cut(s)	965
SmiMI	CAYNNNNRTG	2 cut(s)	182, 1025
SmlI	CTYRAG	3 cut(s)	110, 766, 808
SmoI	CTYRAG	3 cut(s)	110, 766, 808
Sse9I	AATT	9 cut(s)	42, 218, 283, 311, 364, 383, 430, 539, 983
SsiI	CCGC	1 cut(s)	968
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	87, 441
SstI	GAGCTC	1 cut(s)	809
StyI	CCWWGG	2 cut(s)	183, 440
TaaI	ACNGT	2 cut(s)	452, 996
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	1 cut(s)	46
TasI	AATT	9 cut(s)	42, 218, 283, 311, 364, 383, 430, 539, 983
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	168, 471, 537
Tru9I	TTAA	3 cut(s)	168, 471, 537
TscAI	CASTG	2 cut(s)	779, 978
TseFI	GTSAC	1 cut(s)	615
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	615
TspDTI	ATGAA	5 cut(s)	35, 239, 312, 662, 905
TspRI	CASTG	2 cut(s)	779, 978
VpaK11BI	GGWCC	1 cut(s)	965
XapI	RAATTY	3 cut(s)	218, 364, 430
XmaJI	CCTAGG	1 cut(s)	440
XspI	CTAG	2 cut(s)	87, 441
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.