Rorug01G0216500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000766
Physical Location & Seq
Reverse (-)
30927190 .. 30928476
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0216500.1

Sequence Viewer

Length: 813 bp
ATGGCTAAGAAAATCAACATAGAGAGTGATGCTCAAGCAAAGCTCCACACCTCCTCTTCTTCCTCCTCCTCCTCAACCTTGACAACCCATGATTCTTTGATCGATAAAAGCACAGAGAATGATCAGAATTCAGACAAGGTCTCAAGCTCAAAAGGGCAAGAGGTAAACAATGGGAATAATGAGCCTAACACCAAGAAGAGGCAGAGGAGCAGCAGCACTGATCATGGCGATGGAGGCAGGCACCCGACTTTTCGGGGAGTACGAATGCGCTCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGAGGAAGAAGTCAAGAATTTGGTTAGGGACATACCCAACAGCTGAAATGGCAGCCCGAGCGCACGATGTGGCCGCTCGGGCTATCAAAGGTGCTTCTGCTTATCTCAATTTCCCTGAATTGGCTCAAACGCTTCCACAACCGGCTTCTGCTTCTCCCAAGGACATTCAAGCTGCTGCCGCAAAAGCTGCTTCTGCTTTTGAGGAGGTGAAGAAATGTGAAGCTGAAATGGAAGAAGAAGAAGAAGAAGAGGAAGCAACACTGCCCAGCAAAGATGAACAGACAACTACTACTGCTAATACTAGTATTAGTACTAGTAATAGTACAGCTTGTTCTTCATCTTTCACTTCAAATGATTATGATGACAAATTGTTTGACCTTCCAGATCTTTTCATGGATGGCACAAATGGGAGTGATCAATTTTGCTTTTCTTCTTCATCATCATCATGGCATCTGTGTGCAGCAGATACTGGATTCAGACTAGAAGAGCCATTCTTGTGGGAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

29.57

Weight (kDa)

5.04

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 83 - 132 3.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 240
AccBSI CCGCTC 1 cut(s) 380
AccII CGCG 1 cut(s) 300
AciI CCGC 3 cut(s) 298, 378, 483
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 2 cut(s) 127, 321
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 3 cut(s) 261, 616, 628
AfiI CCNNNNNNNGG 2 cut(s) 198, 424
AgsI TTSAA 2 cut(s) 473, 654
AhlI ACTAGT 2 cut(s) 605, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 7 cut(s) 43, 147, 347, 476, 491, 527, 632
AluI AGCT 7 cut(s) 43, 147, 347, 476, 491, 527, 632
Alw26I GTCTC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 2 cut(s) 360, 381
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 7 cut(s) 210, 213, 356, 476, 479, 491, 764
ApoI RAATTY 2 cut(s) 127, 321
ArsI GACNNNNNNTTYG 2 cut(s) 659, 691
AspLEI GCGC 2 cut(s) 270, 367
AsuHPI GGTGA 1 cut(s) 523
AvaI CYCGRG 2 cut(s) 360, 381
BanI GGYRCC 1 cut(s) 240
BbvI GCAGC 7 cut(s) 222, 225, 368, 463, 466, 478, 776
BccI CCATC 2 cut(s) 224, 695
BclI TGATCA 3 cut(s) 121, 220, 718
BcoDI GTCTC 1 cut(s) 145
BcuI ACTAGT 2 cut(s) 605, 617
BfaI CTAG 3 cut(s) 606, 618, 785
BglI GCCNNNNNGGC 1 cut(s) 383
BglII AGATCT 1 cut(s) 688
BisI GCNGC 9 cut(s) 211, 214, 357, 378, 477, 480, 483, 492, 765
BlsI GCNGC 9 cut(s) 212, 215, 358, 379, 478, 481, 484, 493, 766
BmcAI AGTACT 1 cut(s) 616
BmeT110I CYCGRG 2 cut(s) 360, 381
BmiI GGNNCC 1 cut(s) 242
BmsI GCATC 2 cut(s) 19, 763
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpuEI CTTGAG 2 cut(s) 18, 127
Bsa29I ATCGAT 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 305, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 424
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 778
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 305, 462
BseGI GGATG 1 cut(s) 706
BseLI CCNNNNNNNGG 2 cut(s) 198, 424
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 6 cut(s) 43, 55, 58, 61, 220, 521
BseXI GCAGC 7 cut(s) 222, 225, 368, 463, 466, 478, 776
BseYI CCCAGC 1 cut(s) 569
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 240
BshVI ATCGAT 1 cut(s) 102
BsiHKCI CYCGRG 2 cut(s) 360, 381
BsiSI CCGG 1 cut(s) 446
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 2 cut(s) 198, 424
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 1 cut(s) 377
Bso31I GGTCTC 1 cut(s) 145
BsoBI CYCGRG 2 cut(s) 360, 381
Bsp143I GATC 5 cut(s) 99, 121, 220, 688, 718
BspACI CCGC 3 cut(s) 298, 378, 483
BspANI GGCC 1 cut(s) 377
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 242
BspQI GCTCTTC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 145
BsrBI CCGCTC 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 305, 462
BssMI GATC 5 cut(s) 99, 121, 220, 688, 718
BssT1I CCWWGG 1 cut(s) 462
Bst6I CTCTTC 4 cut(s) 61, 191, 546, 783
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 239, 302
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 2 cut(s) 270, 367
BstKTI GATC 5 cut(s) 102, 124, 223, 691, 721
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 5 cut(s) 99, 121, 220, 688, 718
BstMWI GCNNNNNNNGC 9 cut(s) 234, 276, 353, 362, 383, 482, 488, 491, 497
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 7 cut(s) 222, 225, 368, 463, 466, 478, 776
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 801
BstYI RGATCY 1 cut(s) 688
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 1 cut(s) 377
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 2 cut(s) 216, 563
Cac8I GCNNGC 2 cut(s) 239, 302
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 2 cut(s) 270, 367
Cfr10I RCCGGY 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 3 cut(s) 260, 615, 627
CviAII CATG 4 cut(s) 89, 224, 697, 750
CviQI GTAC 3 cut(s) 260, 615, 627
DdeI CTNAG 1 cut(s) 6
DpnI GATC 5 cut(s) 101, 123, 222, 690, 720
DpnII GATC 5 cut(s) 99, 121, 220, 688, 718
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 4 cut(s) 61, 191, 546, 783
EarI CTCTTC 4 cut(s) 61, 191, 546, 783
Eco130I CCWWGG 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 145
Eco88I CYCGRG 2 cut(s) 360, 381
EcoRI GAATTC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 4 cut(s) 92, 227, 700, 753
FaiI YATR 7 cut(s) 20, 90, 225, 337, 663, 698, 751
FaqI GGGAC 1 cut(s) 346
FatI CATG 4 cut(s) 88, 223, 696, 749
FbaI TGATCA 3 cut(s) 121, 220, 718
Fnu4HI GCNGC 9 cut(s) 211, 214, 357, 378, 477, 480, 483, 492, 765
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 9 cut(s) 211, 214, 357, 378, 477, 480, 483, 492, 765
FspBI CTAG 3 cut(s) 606, 618, 785
GlaI GCGC 2 cut(s) 269, 366
GluI GCNGC 9 cut(s) 211, 214, 357, 378, 477, 480, 483, 492, 765
GsaI CCCAGC 1 cut(s) 573
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 446
HhaI GCGC 2 cut(s) 270, 367
Hin1II CATG 4 cut(s) 92, 227, 700, 753
Hin6I GCGC 2 cut(s) 268, 365
HinP1I GCGC 2 cut(s) 268, 365
HinfI GANTC 2 cut(s) 92, 777
HpaII CCGG 1 cut(s) 446
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 4 cut(s) 126, 133, 292, 782
Hpy188III TCNNGA 2 cut(s) 318, 686
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 692
HpyCH4V TGCA 1 cut(s) 764
HpyF10VI GCNNNNNNNGC 9 cut(s) 234, 276, 353, 362, 383, 482, 488, 491, 497
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 4 cut(s) 92, 227, 700, 753
HspAI GCGC 2 cut(s) 268, 365
Ksp22I TGATCA 3 cut(s) 121, 220, 718
Kzo9I GATC 5 cut(s) 99, 121, 220, 688, 718
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 2 cut(s) 48, 207
LpnPI CCDG 6 cut(s) 223, 432, 459, 583, 699, 759
Lsp1109I GCAGC 7 cut(s) 222, 225, 368, 463, 466, 478, 776
LweI GCATC 2 cut(s) 19, 763
MaeI CTAG 3 cut(s) 606, 618, 785
MalI GATC 5 cut(s) 101, 123, 222, 690, 720
MbiI CCGCTC 1 cut(s) 380
MboI GATC 5 cut(s) 99, 121, 220, 688, 718
MflI RGATCY 1 cut(s) 688
MluCI AATT 6 cut(s) 127, 321, 412, 422, 671, 722
MseI TTAA 1 cut(s) 811
MslI CAYNNNNRTG 4 cut(s) 228, 748, 759, 799
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 270
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 9 cut(s) 234, 276, 353, 362, 383, 482, 488, 491, 497
NdeII GATC 5 cut(s) 99, 121, 220, 688, 718
NlaIII CATG 4 cut(s) 92, 227, 700, 753
NlaIV GGNNCC 1 cut(s) 242
NmeAIII GCCGAG 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 92, 777
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 9 cut(s) 212, 215, 358, 379, 478, 481, 484, 493, 766
PspFI CCCAGC 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 242
PsrI GAACNNNNNNTAC 2 cut(s) 619, 651
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 688
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 347
RsaI GTAC 3 cut(s) 261, 616, 628
RsaNI GTAC 3 cut(s) 260, 615, 627
RseI CAYNNNNRTG 4 cut(s) 228, 748, 759, 799
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 811
SatI GCNGC 9 cut(s) 211, 214, 357, 378, 477, 480, 483, 492, 765
Sau3AI GATC 5 cut(s) 99, 121, 220, 688, 718
ScaI AGTACT 1 cut(s) 616
SfaNI GCATC 2 cut(s) 19, 763
SmiMI CAYNNNNRTG 4 cut(s) 228, 748, 759, 799
SmlI CTYRAG 2 cut(s) 33, 142
SmoI CTYRAG 2 cut(s) 33, 142
SpeI ACTAGT 2 cut(s) 605, 617
Sse9I AATT 6 cut(s) 127, 321, 412, 422, 671, 722
SsiI CCGC 3 cut(s) 298, 378, 483
SspMI CTAG 3 cut(s) 606, 618, 785
StyI CCWWGG 1 cut(s) 462
TaqI TCGA 1 cut(s) 102
TasI AATT 6 cut(s) 127, 321, 412, 422, 671, 722
TatI WGTACW 2 cut(s) 614, 626
TauI GCSGC 2 cut(s) 380, 485
TfiI GAWTC 2 cut(s) 92, 777
Tru1I TTAA 1 cut(s) 811
Tru9I TTAA 1 cut(s) 811
TscAI CASTG 2 cut(s) 223, 570
TseI GCWGC 7 cut(s) 210, 213, 356, 476, 479, 491, 764
TspDTI ATGAA 4 cut(s) 594, 630, 685, 729
TspRI CASTG 2 cut(s) 223, 570
Tth111I GACNNNGTC 1 cut(s) 137
XapI RAATTY 2 cut(s) 127, 321
XspI CTAG 3 cut(s) 606, 618, 785
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.